Revision 5656
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 11 | 11 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
| 12 | 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 13 | 13 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 16 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 17 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 18 | 16 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 19 | 17 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 18 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 19 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 20 | 20 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 21 | 21 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| 22 | 22 |
locality,/location/locationnarrative/_merge/1, |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 50 | 50 |
<organizationname>TNRS</organizationname> |
| 51 | 51 |
</party> |
| 52 | 52 |
</creator_id> |
| 53 |
<identifyingtaxonomicname>
|
|
| 53 |
<taxonomicname> |
|
| 54 | 54 |
<_join_words> |
| 55 | 55 |
<1>$family</1> |
| 56 | 56 |
<2>$genus</2> |
| 57 | 57 |
</_join_words> |
| 58 |
</identifyingtaxonomicname>
|
|
| 58 |
</taxonomicname> |
|
| 59 | 59 |
</taxonlabel> |
| 60 | 60 |
</matched_label_id> |
| 61 |
<identifyingtaxonomicname> |
|
| 62 |
<_join_words> |
|
| 63 |
<1>$family</1> |
|
| 64 |
<2>$genus</2> |
|
| 65 |
</_join_words> |
|
| 66 |
</identifyingtaxonomicname> |
|
| 67 | 61 |
<parent_id> |
| 68 | 62 |
<taxonlabel> |
| 69 | 63 |
<parent_id> |
| ... | ... | |
| 105 | 99 |
</parent_id> |
| 106 | 100 |
</taxonlabel> |
| 107 | 101 |
</parent_id> |
| 102 |
<taxonomicname> |
|
| 103 |
<_join_words> |
|
| 104 |
<1>$family</1> |
|
| 105 |
<2>$genus</2> |
|
| 106 |
</_join_words> |
|
| 107 |
</taxonomicname> |
|
| 108 | 108 |
<taxonverbatim> |
| 109 | 109 |
<family>$family</family> |
| 110 | 110 |
<genus>$genus</genus> |
| inputs/test_taxonomic_names/Taxon/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
test_taxonomic_names,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 4 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 5 | 4 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode, |
| 5 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 6 | 6 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial, |
| inputs/test_taxonomic_names/Taxon/test.xml.ref | ||
|---|---|---|
| 17 | 17 |
<organizationname>TNRS</organizationname> |
| 18 | 18 |
</party> |
| 19 | 19 |
</creator_id> |
| 20 |
<identifyingtaxonomicname>$scientificName</identifyingtaxonomicname>
|
|
| 20 |
<taxonomicname>$scientificName</taxonomicname>
|
|
| 21 | 21 |
</taxonlabel> |
| 22 | 22 |
</matched_label_id> |
| 23 |
<identifyingtaxonomicname>$scientificName</identifyingtaxonomicname> |
|
| 24 | 23 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
| 24 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 25 | 25 |
<taxonverbatim><binomial>$scientificName</binomial></taxonverbatim> |
| 26 | 26 |
</taxonlabel> |
| 27 | 27 |
</taxonlabel_id> |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 21 | 21 |
darwin:CollectorNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1", |
| 22 | 22 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 23 | 23 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 24 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 25 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 26 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 27 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 28 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 29 |
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 24 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 25 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 26 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 27 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 28 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4", |
|
| 29 |
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 30 | 30 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 31 | 31 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 32 | 32 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| 33 | 33 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
| 34 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 35 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 36 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 37 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 38 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 39 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 40 | 34 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
| 41 | 35 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 42 | 36 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| ... | ... | |
| 45 | 39 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
| 46 | 40 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet", |
| 47 | 41 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 42 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 43 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 44 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 45 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 46 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 47 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 48 | 48 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author, |
| 49 | 49 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial, |
| 50 | 50 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 28 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 29 | 26 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 30 | 27 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 31 | 28 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 29 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 30 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 32 | 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 33 | 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| 34 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species, |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 52 | 52 |
<organizationname>TNRS</organizationname> |
| 53 | 53 |
</party> |
| 54 | 54 |
</creator_id> |
| 55 |
<identifyingtaxonomicname>
|
|
| 55 |
<taxonomicname> |
|
| 56 | 56 |
<_join_words> |
| 57 | 57 |
<1>$Family</1> |
| 58 | 58 |
<2>$Genus</2> |
| 59 | 59 |
<3>$Species</3> |
| 60 | 60 |
</_join_words> |
| 61 |
</identifyingtaxonomicname>
|
|
| 61 |
</taxonomicname> |
|
| 62 | 62 |
</taxonlabel> |
| 63 | 63 |
</matched_label_id> |
| 64 |
<identifyingtaxonomicname> |
|
| 65 |
<_join_words> |
|
| 66 |
<1>$Family</1> |
|
| 67 |
<2>$Genus</2> |
|
| 68 |
<3>$Species</3> |
|
| 69 |
</_join_words> |
|
| 70 |
</identifyingtaxonomicname> |
|
| 71 | 64 |
<parent_id> |
| 72 | 65 |
<taxonlabel> |
| 73 | 66 |
<parent_id> |
| ... | ... | |
| 110 | 103 |
</parent_id> |
| 111 | 104 |
</taxonlabel> |
| 112 | 105 |
</parent_id> |
| 106 |
<taxonomicname> |
|
| 107 |
<_join_words> |
|
| 108 |
<1>$Family</1> |
|
| 109 |
<2>$Genus</2> |
|
| 110 |
<3>$Species</3> |
|
| 111 |
</_join_words> |
|
| 112 |
</taxonomicname> |
|
| 113 | 113 |
<taxonverbatim> |
| 114 | 114 |
<family>$Family</family> |
| 115 | 115 |
<genus>$Genus</genus> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 28 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 29 | 26 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 30 | 27 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 31 | 28 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 29 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 30 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 32 | 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 33 | 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| 34 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species, |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 52 | 52 |
<organizationname>TNRS</organizationname> |
| 53 | 53 |
</party> |
| 54 | 54 |
</creator_id> |
| 55 |
<identifyingtaxonomicname>
|
|
| 55 |
<taxonomicname> |
|
| 56 | 56 |
<_join_words> |
| 57 | 57 |
<1>$Family</1> |
| 58 | 58 |
<2>$Genus</2> |
| 59 | 59 |
<3>$Species</3> |
| 60 | 60 |
</_join_words> |
| 61 |
</identifyingtaxonomicname>
|
|
| 61 |
</taxonomicname> |
|
| 62 | 62 |
</taxonlabel> |
| 63 | 63 |
</matched_label_id> |
| 64 |
<identifyingtaxonomicname> |
|
| 65 |
<_join_words> |
|
| 66 |
<1>$Family</1> |
|
| 67 |
<2>$Genus</2> |
|
| 68 |
<3>$Species</3> |
|
| 69 |
</_join_words> |
|
| 70 |
</identifyingtaxonomicname> |
|
| 71 | 64 |
<parent_id> |
| 72 | 65 |
<taxonlabel> |
| 73 | 66 |
<parent_id> |
| ... | ... | |
| 110 | 103 |
</parent_id> |
| 111 | 104 |
</taxonlabel> |
| 112 | 105 |
</parent_id> |
| 106 |
<taxonomicname> |
|
| 107 |
<_join_words> |
|
| 108 |
<1>$Family</1> |
|
| 109 |
<2>$Genus</2> |
|
| 110 |
<3>$Species</3> |
|
| 111 |
</_join_words> |
|
| 112 |
</taxonomicname> |
|
| 113 | 113 |
<taxonverbatim> |
| 114 | 114 |
<family>$Family</family> |
| 115 | 115 |
<genus>$Genus</genus> |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 27 | 27 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 28 | 28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 29 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 32 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 33 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 29 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 32 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 33 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4", |
|
| 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 35 | 35 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 36 | 36 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 37 | 37 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| 38 | 38 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
| 39 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 40 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 41 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 42 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 43 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 44 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 45 | 39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
| 46 | 40 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 47 | 41 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| ... | ... | |
| 50 | 44 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
| 51 | 45 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet", |
| 52 | 46 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 47 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 48 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 49 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 50 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 51 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 52 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 53 | 53 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author, |
| 54 | 54 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial, |
| 55 | 55 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 117 | 117 |
<organizationname>TNRS</organizationname> |
| 118 | 118 |
</party> |
| 119 | 119 |
</creator_id> |
| 120 |
<identifyingtaxonomicname>
|
|
| 120 |
<taxonomicname> |
|
| 121 | 121 |
<_join_words> |
| 122 | 122 |
<1> |
| 123 | 123 |
<_alt> |
| ... | ... | |
| 134 | 134 |
</1> |
| 135 | 135 |
<2>$ScientificNameAuthor</2> |
| 136 | 136 |
</_join_words> |
| 137 |
</identifyingtaxonomicname>
|
|
| 137 |
</taxonomicname> |
|
| 138 | 138 |
</taxonlabel> |
| 139 | 139 |
</matched_label_id> |
| 140 | 140 |
<creationdate> |
| ... | ... | |
| 168 | 168 |
<path><party><fullname>$IdentifiedBy</fullname></party></path> |
| 169 | 169 |
</_simplifyPath> |
| 170 | 170 |
</creator_id> |
| 171 |
<identifyingtaxonomicname> |
|
| 172 |
<_join_words> |
|
| 173 |
<1> |
|
| 174 |
<_alt> |
|
| 175 |
<1>$ScientificName</1> |
|
| 176 |
<2> |
|
| 177 |
<_join_words> |
|
| 178 |
<1>$Family</1> |
|
| 179 |
<2>$Genus</2> |
|
| 180 |
<3>$Species</3> |
|
| 181 |
<4>$Subspecies</4> |
|
| 182 |
</_join_words> |
|
| 183 |
</2> |
|
| 184 |
</_alt> |
|
| 185 |
</1> |
|
| 186 |
<2>$ScientificNameAuthor</2> |
|
| 187 |
</_join_words> |
|
| 188 |
</identifyingtaxonomicname> |
|
| 189 | 171 |
<parent_id> |
| 190 | 172 |
<taxonlabel> |
| 191 | 173 |
<parent_id> |
| ... | ... | |
| 253 | 235 |
</parent_id> |
| 254 | 236 |
</taxonlabel> |
| 255 | 237 |
</parent_id> |
| 238 |
<taxonomicname> |
|
| 239 |
<_join_words> |
|
| 240 |
<1> |
|
| 241 |
<_alt> |
|
| 242 |
<1>$ScientificName</1> |
|
| 243 |
<2> |
|
| 244 |
<_join_words> |
|
| 245 |
<1>$Family</1> |
|
| 246 |
<2>$Genus</2> |
|
| 247 |
<3>$Species</3> |
|
| 248 |
<4>$Subspecies</4> |
|
| 249 |
</_join_words> |
|
| 250 |
</2> |
|
| 251 |
</_alt> |
|
| 252 |
</1> |
|
| 253 |
<2>$ScientificNameAuthor</2> |
|
| 254 |
</_join_words> |
|
| 255 |
</taxonomicname> |
|
| 256 | 256 |
<taxonverbatim> |
| 257 | 257 |
<author>$ScientificNameAuthor</author> |
| 258 | 258 |
<binomial>$ScientificName</binomial> |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 30 | 30 |
Species and morphotypes,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3","Contains less than ""Specie+autor""" |
| 31 | 31 |
Habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""HemiepÃfito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 32 | 32 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 33 |
Specie+autor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/1",
|
|
| 34 |
Species and morphotypes,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1","Contains less than ""Specie+autor"""
|
|
| 35 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 36 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 37 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 38 |
Autor (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 33 |
Specie+autor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/1", |
|
| 34 |
Species and morphotypes,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1","Contains less than ""Specie+autor""" |
|
| 35 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 36 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 37 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 38 |
Autor (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 39 | 39 |
Determined by,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
| 40 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/1, |
|
| 41 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,"Contains less than ""Specie+autor""" |
|
| 42 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 43 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 44 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 45 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 46 | 40 |
Specific epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 47 | 41 |
Genera,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 48 | 42 |
Family (revised),"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 43 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/1, |
|
| 44 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1,"Contains less than ""Specie+autor""" |
|
| 45 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 46 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 47 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 48 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 49 | 49 |
Autor (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author, |
| 50 | 50 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial,"Contains less than ""Specie+autor""" |
| 51 | 51 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| ... | ... | |
| 53 | 53 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species, |
| 54 | 54 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/taxonomicname, |
| 55 | 55 |
Qualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 56 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 57 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera |
|
| 58 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 59 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera |
|
| 56 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 57 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera |
|
| 60 | 58 |
Field name,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",Often = Genera |
| 61 | 59 |
Field family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 60 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 61 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,Often = Genera |
|
| 62 | 62 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonverbatim/family, |
| 63 | 63 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonverbatim/genus,Often = Genera |
| 64 | 64 |
Index collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| inputs/Madidi/Organism/test.xml.ref | ||
|---|---|---|
| 72 | 72 |
<organizationname>TNRS</organizationname> |
| 73 | 73 |
</party> |
| 74 | 74 |
</creator_id> |
| 75 |
<identifyingtaxonomicname>
|
|
| 75 |
<taxonomicname> |
|
| 76 | 76 |
<_alt> |
| 77 | 77 |
<1>$Specie+autor</1> |
| 78 | 78 |
<2> |
| ... | ... | |
| 93 | 93 |
</_join_words> |
| 94 | 94 |
</2> |
| 95 | 95 |
</_alt> |
| 96 |
</identifyingtaxonomicname>
|
|
| 96 |
</taxonomicname> |
|
| 97 | 97 |
</taxonlabel> |
| 98 | 98 |
</matched_label_id> |
| 99 | 99 |
<creator_id> |
| ... | ... | |
| 102 | 102 |
<path><party><fullname>$Determined by</fullname></party></path> |
| 103 | 103 |
</_simplifyPath> |
| 104 | 104 |
</creator_id> |
| 105 |
<identifyingtaxonomicname> |
|
| 106 |
<_alt> |
|
| 107 |
<1>$Specie+autor</1> |
|
| 108 |
<2> |
|
| 109 |
<_join_words> |
|
| 110 |
<1> |
|
| 111 |
<_alt> |
|
| 112 |
<1>$Species and morphotypes</1> |
|
| 113 |
<2> |
|
| 114 |
<_join_words> |
|
| 115 |
<1>$Family (revised)</1> |
|
| 116 |
<2>$Genera</2> |
|
| 117 |
<3>$Specific epithet</3> |
|
| 118 |
</_join_words> |
|
| 119 |
</2> |
|
| 120 |
</_alt> |
|
| 121 |
</1> |
|
| 122 |
<2>$Autor (revised)</2> |
|
| 123 |
</_join_words> |
|
| 124 |
</2> |
|
| 125 |
</_alt> |
|
| 126 |
</identifyingtaxonomicname> |
|
| 127 | 105 |
<parent_id> |
| 128 | 106 |
<taxonlabel> |
| 129 | 107 |
<parent_id> |
| ... | ... | |
| 166 | 144 |
</parent_id> |
| 167 | 145 |
</taxonlabel> |
| 168 | 146 |
</parent_id> |
| 147 |
<taxonomicname> |
|
| 148 |
<_alt> |
|
| 149 |
<1>$Specie+autor</1> |
|
| 150 |
<2> |
|
| 151 |
<_join_words> |
|
| 152 |
<1> |
|
| 153 |
<_alt> |
|
| 154 |
<1>$Species and morphotypes</1> |
|
| 155 |
<2> |
|
| 156 |
<_join_words> |
|
| 157 |
<1>$Family (revised)</1> |
|
| 158 |
<2>$Genera</2> |
|
| 159 |
<3>$Specific epithet</3> |
|
| 160 |
</_join_words> |
|
| 161 |
</2> |
|
| 162 |
</_alt> |
|
| 163 |
</1> |
|
| 164 |
<2>$Autor (revised)</2> |
|
| 165 |
</_join_words> |
|
| 166 |
</2> |
|
| 167 |
</_alt> |
|
| 168 |
</taxonomicname> |
|
| 169 | 169 |
<taxonverbatim> |
| 170 | 170 |
<author>$Autor (revised)</author> |
| 171 | 171 |
<binomial>$Species and morphotypes</binomial> |
| ... | ... | |
| 182 | 182 |
<isoriginal>true</isoriginal> |
| 183 | 183 |
<taxonlabel_id> |
| 184 | 184 |
<taxonlabel> |
| 185 |
<identifyingtaxonomicname> |
|
| 186 |
<_join_words> |
|
| 187 |
<1>$Field family</1> |
|
| 188 |
<2>$Field name</2> |
|
| 189 |
</_join_words> |
|
| 190 |
</identifyingtaxonomicname> |
|
| 191 | 185 |
<matched_label_id> |
| 192 | 186 |
<taxonlabel> |
| 193 | 187 |
<creator_id> |
| ... | ... | |
| 196 | 190 |
<organizationname>TNRS</organizationname> |
| 197 | 191 |
</party> |
| 198 | 192 |
</creator_id> |
| 199 |
<identifyingtaxonomicname>
|
|
| 193 |
<taxonomicname> |
|
| 200 | 194 |
<_join_words> |
| 201 | 195 |
<1>$Field family</1> |
| 202 | 196 |
<2>$Field name</2> |
| 203 | 197 |
</_join_words> |
| 204 |
</identifyingtaxonomicname>
|
|
| 198 |
</taxonomicname> |
|
| 205 | 199 |
</taxonlabel> |
| 206 | 200 |
</matched_label_id> |
| 207 | 201 |
<parent_id> |
| ... | ... | |
| 245 | 239 |
</parent_id> |
| 246 | 240 |
</taxonlabel> |
| 247 | 241 |
</parent_id> |
| 242 |
<taxonomicname> |
|
| 243 |
<_join_words> |
|
| 244 |
<1>$Field family</1> |
|
| 245 |
<2>$Field name</2> |
|
| 246 |
</_join_words> |
|
| 247 |
</taxonomicname> |
|
| 248 | 248 |
<taxonverbatim> |
| 249 | 249 |
<family>$Field family</family> |
| 250 | 250 |
<genus>$Field name</genus> |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 42 | 42 |
GROUP BY herbarium, accession |
| 43 | 43 |
HAVING count(*) > 1 |
| 44 | 44 |
-----" |
| 45 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 46 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 47 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 48 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 49 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 50 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1", |
|
| 51 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2", |
|
| 52 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
|
| 53 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2", |
|
| 54 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 55 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 57 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 58 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 59 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1", |
|
| 60 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2", |
|
| 61 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 62 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 45 |
SciName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 46 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 47 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 48 |
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 49 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 50 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1", |
|
| 51 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2", |
|
| 52 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
|
| 53 |
authors,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 63 | 54 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/1", |
| 64 | 55 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank/_alt/2", |
| 65 | 56 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank/_alt/1", |
| ... | ... | |
| 70 | 61 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
| 71 | 62 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank/_alt/1, |
| 72 | 63 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank/_alt/2, |
| 64 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 65 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 66 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 67 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 68 |
infraname,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 69 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/1", |
|
| 70 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2", |
|
| 71 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 72 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 73 | 73 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author, |
| 74 | 74 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial, |
| 75 | 75 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 80 | 80 |
<organizationname>TNRS</organizationname> |
| 81 | 81 |
</party> |
| 82 | 82 |
</creator_id> |
| 83 |
<identifyingtaxonomicname>
|
|
| 83 |
<taxonomicname> |
|
| 84 | 84 |
<_join_words> |
| 85 | 85 |
<1> |
| 86 | 86 |
<_alt> |
| ... | ... | |
| 112 | 112 |
</1> |
| 113 | 113 |
<2>$authors</2> |
| 114 | 114 |
</_join_words> |
| 115 |
</identifyingtaxonomicname>
|
|
| 115 |
</taxonomicname> |
|
| 116 | 116 |
</taxonlabel> |
| 117 | 117 |
</matched_label_id> |
| 118 |
<identifyingtaxonomicname> |
|
| 119 |
<_join_words> |
|
| 120 |
<1> |
|
| 121 |
<_alt> |
|
| 122 |
<1>$SciName</1> |
|
| 123 |
<2> |
|
| 124 |
<_join_words> |
|
| 125 |
<1>$family</1> |
|
| 126 |
<2>$genus</2> |
|
| 127 |
<3>$species</3> |
|
| 128 |
<5> |
|
| 129 |
<_join_words> |
|
| 130 |
<1> |
|
| 131 |
<_if name="if has infraspecificEpithet"> |
|
| 132 |
<cond>$infraname</cond> |
|
| 133 |
<then> |
|
| 134 |
<_alt> |
|
| 135 |
<1>$usdaRank</1> |
|
| 136 |
<2>$infrarank</2> |
|
| 137 |
</_alt> |
|
| 138 |
</then> |
|
| 139 |
</_if> |
|
| 140 |
</1> |
|
| 141 |
<2>$infraname</2> |
|
| 142 |
</_join_words> |
|
| 143 |
</5> |
|
| 144 |
</_join_words> |
|
| 145 |
</2> |
|
| 146 |
</_alt> |
|
| 147 |
</1> |
|
| 148 |
<2>$authors</2> |
|
| 149 |
</_join_words> |
|
| 150 |
</identifyingtaxonomicname> |
|
| 151 | 118 |
<parent_id> |
| 152 | 119 |
<taxonlabel> |
| 153 | 120 |
<rank> |
| ... | ... | |
| 211 | 178 |
<2>$infrarank</2> |
| 212 | 179 |
</_alt> |
| 213 | 180 |
</rank> |
| 181 |
<taxonomicname> |
|
| 182 |
<_join_words> |
|
| 183 |
<1> |
|
| 184 |
<_alt> |
|
| 185 |
<1>$SciName</1> |
|
| 186 |
<2> |
|
| 187 |
<_join_words> |
|
| 188 |
<1>$family</1> |
|
| 189 |
<2>$genus</2> |
|
| 190 |
<3>$species</3> |
|
| 191 |
<5> |
|
| 192 |
<_join_words> |
|
| 193 |
<1> |
|
| 194 |
<_if name="if has infraspecificEpithet"> |
|
| 195 |
<cond>$infraname</cond> |
|
| 196 |
<then> |
|
| 197 |
<_alt> |
|
| 198 |
<1>$usdaRank</1> |
|
| 199 |
<2>$infrarank</2> |
|
| 200 |
</_alt> |
|
| 201 |
</then> |
|
| 202 |
</_if> |
|
| 203 |
</1> |
|
| 204 |
<2>$infraname</2> |
|
| 205 |
</_join_words> |
|
| 206 |
</5> |
|
| 207 |
</_join_words> |
|
| 208 |
</2> |
|
| 209 |
</_alt> |
|
| 210 |
</1> |
|
| 211 |
<2>$authors</2> |
|
| 212 |
</_join_words> |
|
| 213 |
</taxonomicname> |
|
| 214 | 214 |
<taxonverbatim> |
| 215 | 215 |
<author>$authors</author> |
| 216 | 216 |
<binomial>$SciName</binomial> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2", |
| 21 | 21 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 22 | 22 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 23 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/1",
|
|
| 24 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 25 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 26 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 27 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
|
|
| 28 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 29 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
|
|
| 30 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",
|
|
| 23 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/1", |
|
| 24 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 25 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 26 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 27 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 28 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 29 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
|
| 30 |
scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 31 | 31 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 32 | 32 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
| 33 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/1, |
|
| 34 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 35 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 36 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 37 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 38 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 39 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 40 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2, |
|
| 41 | 33 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 42 | 34 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank", |
| 43 | 35 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| ... | ... | |
| 49 | 41 |
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
| 50 | 42 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
| 51 | 43 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank, |
| 44 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/1, |
|
| 45 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 46 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 47 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 48 |
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 49 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 50 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 51 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 52 | 52 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author, |
| 53 | 53 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 54 | 54 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 77 | 77 |
<organizationname>TNRS</organizationname> |
| 78 | 78 |
</party> |
| 79 | 79 |
</creator_id> |
| 80 |
<identifyingtaxonomicname>
|
|
| 80 |
<taxonomicname> |
|
| 81 | 81 |
<_alt> |
| 82 | 82 |
<1>$scientificName</1> |
| 83 | 83 |
<2> |
| ... | ... | |
| 104 | 104 |
</_join_words> |
| 105 | 105 |
</2> |
| 106 | 106 |
</_alt> |
| 107 |
</identifyingtaxonomicname>
|
|
| 107 |
</taxonomicname> |
|
| 108 | 108 |
</taxonlabel> |
| 109 | 109 |
</matched_label_id> |
| 110 | 110 |
<creationdate><_date><date><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></date></_date></creationdate> |
| ... | ... | |
| 114 | 114 |
<path><party><fullname>$identifiedBy</fullname></party></path> |
| 115 | 115 |
</_simplifyPath> |
| 116 | 116 |
</creator_id> |
| 117 |
<identifyingtaxonomicname> |
|
| 118 |
<_alt> |
|
| 119 |
<1>$scientificName</1> |
|
| 120 |
<2> |
|
| 121 |
<_join_words> |
|
| 122 |
<1> |
|
| 123 |
<_join_words> |
|
| 124 |
<1>$family</1> |
|
| 125 |
<2>$genus</2> |
|
| 126 |
<3>$specificEpithet</3> |
|
| 127 |
<5> |
|
| 128 |
<_join_words> |
|
| 129 |
<1> |
|
| 130 |
<_if name="if has infraspecificEpithet"> |
|
| 131 |
<cond>$infraspecificEpithet</cond> |
|
| 132 |
<then>$taxonRank</then> |
|
| 133 |
</_if> |
|
| 134 |
</1> |
|
| 135 |
<2>$infraspecificEpithet</2> |
|
| 136 |
</_join_words> |
|
| 137 |
</5> |
|
| 138 |
</_join_words> |
|
| 139 |
</1> |
|
| 140 |
<2>$scientificNameAuthorship</2> |
|
| 141 |
</_join_words> |
|
| 142 |
</2> |
|
| 143 |
</_alt> |
|
| 144 |
</identifyingtaxonomicname> |
|
| 145 | 117 |
<parent_id> |
| 146 | 118 |
<taxonlabel> |
| 147 | 119 |
<rank>$taxonRank</rank> |
| ... | ... | |
| 212 | 184 |
</taxonlabel> |
| 213 | 185 |
</parent_id> |
| 214 | 186 |
<rank>$taxonRank</rank> |
| 187 |
<taxonomicname> |
|
| 188 |
<_alt> |
|
| 189 |
<1>$scientificName</1> |
|
| 190 |
<2> |
|
| 191 |
<_join_words> |
|
| 192 |
<1> |
|
| 193 |
<_join_words> |
|
| 194 |
<1>$family</1> |
|
| 195 |
<2>$genus</2> |
|
| 196 |
<3>$specificEpithet</3> |
|
| 197 |
<5> |
|
| 198 |
<_join_words> |
|
| 199 |
<1> |
|
| 200 |
<_if name="if has infraspecificEpithet"> |
|
| 201 |
<cond>$infraspecificEpithet</cond> |
|
| 202 |
<then>$taxonRank</then> |
|
| 203 |
</_if> |
|
| 204 |
</1> |
|
| 205 |
<2>$infraspecificEpithet</2> |
|
| 206 |
</_join_words> |
|
| 207 |
</5> |
|
| 208 |
</_join_words> |
|
| 209 |
</1> |
|
| 210 |
<2>$scientificNameAuthorship</2> |
|
| 211 |
</_join_words> |
|
| 212 |
</2> |
|
| 213 |
</_alt> |
|
| 214 |
</taxonomicname> |
|
| 215 | 215 |
<taxonverbatim> |
| 216 | 216 |
<author>$scientificNameAuthorship</author> |
| 217 | 217 |
<family>$family</family> |
| inputs/.NCBI/higher_taxa/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
NCBI,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
|
|
| 3 |
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6",
|
|
| 2 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 3 |
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6", |
|
| 4 | 4 |
parent tax_id,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| 5 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 6 |
name_txt,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6, |
|
| 7 | 5 |
parent tax_id,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/cond/_exists", |
| 8 | 6 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 9 | 7 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank", |
| 10 | 8 |
rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank, |
| 11 | 9 |
tax_id,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode, |
| 12 | 10 |
name_txt,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonepithet, |
| 11 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 12 |
name_txt,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/6, |
|
| 13 | 13 |
rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/verbatimrank, |
| 14 | 14 |
4,,** No join mapping for *4 ** |
| 15 | 15 |
5,,** No join mapping for *5 ** |
| inputs/.NCBI/higher_taxa/test.xml.ref | ||
|---|---|---|
| 17 | 17 |
<organizationname>TNRS</organizationname> |
| 18 | 18 |
</party> |
| 19 | 19 |
</creator_id> |
| 20 |
<identifyingtaxonomicname>$name_txt</identifyingtaxonomicname>
|
|
| 20 |
<taxonomicname>$name_txt</taxonomicname>
|
|
| 21 | 21 |
</taxonlabel> |
| 22 | 22 |
</matched_label_id> |
| 23 | 23 |
<_taxonlabel_set_parent_id><parent_id><taxonlabel><sourceaccessioncode>$parent tax_id</sourceaccessioncode></taxonlabel></parent_id></_taxonlabel_set_parent_id> |
| 24 |
<identifyingtaxonomicname>$name_txt</identifyingtaxonomicname> |
|
| 25 | 24 |
<rank>$rank</rank> |
| 26 | 25 |
<sourceaccessioncode>$tax_id</sourceaccessioncode> |
| 27 | 26 |
<taxonepithet>$name_txt</taxonepithet> |
| 27 |
<taxonomicname>$name_txt</taxonomicname> |
|
| 28 | 28 |
<taxonverbatim><verbatimrank>$rank</verbatimrank></taxonverbatim> |
| 29 | 29 |
</taxonlabel> |
| 30 | 30 |
</taxonlabel_id> |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 64 | 64 |
tag1,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2/_alt/2/_alt/2","The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once." |
| 65 | 65 |
habit,"/location/locationevent/taxonoccurrence/growthform/_map:[./{T,Arbol,palm}=tree,./{H,""HemiepÃfito""}=hemiepiphyte,./{L,l,""L?"",Liana}=liana,E=epiphyte,S=shrub,Hb=herb,""vine-herbaceous""=vine,graminoid=grass,rosette=forb,*=*]/value","Brad: This is growth form (tree, shrub, herb, etc.). It is an observation of a trait.; According to <http://salvias.net/Documents/salvias_data_dictionary.html#Plot+data.habit>, <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/SALVIAS#Habit>"
|
| 66 | 66 |
OBSERVATION_ID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later." |
| 67 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 68 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 69 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 70 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 71 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 72 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
|
| 73 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName. |
|
| 74 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 75 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 76 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 77 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 78 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 79 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 80 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/2,Brad: This is the author of the scientificName. |
|
| 67 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 68 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 69 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 70 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 71 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 72 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
|
| 73 |
specific_authority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2",Brad: This is the author of the scientificName. |
|
| 81 | 74 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank", |
| 82 | 75 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank", |
| 83 | 76 |
specific_epithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| ... | ... | |
| 85 | 78 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 86 | 79 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet, |
| 87 | 80 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/rank, |
| 81 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 82 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 83 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 84 |
infra_ep_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond", |
|
| 85 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
|
| 86 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
|
| 87 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2,Brad: This is the author of the scientificName. |
|
| 88 | 88 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author,Brad: This is the author of the scientificName. |
| 89 | 89 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 90 | 90 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| 91 | 91 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species, |
| 92 | 92 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/verbatimrank, |
| 93 | 93 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 94 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
|
| 95 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
|
| 96 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
|
| 97 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
|
| 94 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
|
| 95 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
|
| 98 | 96 |
orig_species,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",Brad: OMIT |
| 99 | 97 |
orig_family,"/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",Brad: OMIT |
| 98 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
|
| 99 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
|
| 100 | 100 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonverbatim/family,Brad: OMIT |
| 101 | 101 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonlabel/taxonverbatim/species,Brad: OMIT |
| 102 | 102 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
|---|---|---|
| 155 | 155 |
<organizationname>TNRS</organizationname> |
| 156 | 156 |
</party> |
| 157 | 157 |
</creator_id> |
| 158 |
<identifyingtaxonomicname>
|
|
| 158 |
<taxonomicname> |
|
| 159 | 159 |
<_join_words> |
| 160 | 160 |
<1> |
| 161 | 161 |
<_join_words> |
| ... | ... | |
| 177 | 177 |
</1> |
| 178 | 178 |
<2>$specific_authority</2> |
| 179 | 179 |
</_join_words> |
| 180 |
</identifyingtaxonomicname>
|
|
| 180 |
</taxonomicname> |
|
| 181 | 181 |
</taxonlabel> |
| 182 | 182 |
</matched_label_id> |
| 183 |
<identifyingtaxonomicname> |
|
| 184 |
<_join_words> |
|
| 185 |
<1> |
|
| 186 |
<_join_words> |
|
| 187 |
<1>$family</1> |
|
| 188 |
<2>$genus</2> |
|
| 189 |
<3>$specific_epithet</3> |
|
| 190 |
<5> |
|
| 191 |
<_join_words> |
|
| 192 |
<1> |
|
| 193 |
<_if name="if has infraspecificEpithet"> |
|
| 194 |
<cond>$infra_ep_1</cond> |
|
| 195 |
<then>$infra_rank_1</then> |
|
| 196 |
</_if> |
|
| 197 |
</1> |
|
| 198 |
<2>$infra_ep_1</2> |
|
| 199 |
</_join_words> |
|
| 200 |
</5> |
|
| 201 |
</_join_words> |
|
| 202 |
</1> |
|
| 203 |
<2>$specific_authority</2> |
|
| 204 |
</_join_words> |
|
| 205 |
</identifyingtaxonomicname> |
|
| 206 | 183 |
<parent_id> |
| 207 | 184 |
<taxonlabel> |
| 208 | 185 |
<rank>$infra_rank_1</rank> |
| ... | ... | |
| 249 | 226 |
</taxonlabel> |
| 250 | 227 |
</parent_id> |
| 251 | 228 |
<rank>$infra_rank_1</rank> |
| 229 |
<taxonomicname> |
|
| 230 |
<_join_words> |
|
| 231 |
<1> |
|
| 232 |
<_join_words> |
|
| 233 |
<1>$family</1> |
|
| 234 |
<2>$genus</2> |
|
| 235 |
<3>$specific_epithet</3> |
|
| 236 |
<5> |
|
| 237 |
<_join_words> |
|
| 238 |
<1> |
|
| 239 |
<_if name="if has infraspecificEpithet"> |
|
| 240 |
<cond>$infra_ep_1</cond> |
|
| 241 |
<then>$infra_rank_1</then> |
|
| 242 |
</_if> |
|
| 243 |
</1> |
|
| 244 |
<2>$infra_ep_1</2> |
|
| 245 |
</_join_words> |
|
| 246 |
</5> |
|
| 247 |
</_join_words> |
|
| 248 |
</1> |
|
| 249 |
<2>$specific_authority</2> |
|
| 250 |
</_join_words> |
|
| 251 |
</taxonomicname> |
|
| 252 | 252 |
<taxonverbatim> |
| 253 | 253 |
<author>$specific_authority</author> |
| 254 | 254 |
<family>$family</family> |
| ... | ... | |
| 264 | 264 |
<isoriginal>true</isoriginal> |
| 265 | 265 |
<taxonlabel_id> |
| 266 | 266 |
<taxonlabel> |
| 267 |
<identifyingtaxonomicname> |
|
| 268 |
<_join_words> |
|
| 269 |
<1>$orig_family</1> |
|
| 270 |
<3>$orig_species</3> |
|
| 271 |
</_join_words> |
|
| 272 |
</identifyingtaxonomicname> |
|
| 273 | 267 |
<matched_label_id> |
| 274 | 268 |
<taxonlabel> |
| 275 | 269 |
<creator_id> |
| ... | ... | |
| 278 | 272 |
<organizationname>TNRS</organizationname> |
| 279 | 273 |
</party> |
| 280 | 274 |
</creator_id> |
| 281 |
<identifyingtaxonomicname>
|
|
| 275 |
<taxonomicname> |
|
| 282 | 276 |
<_join_words> |
| 283 | 277 |
<1>$orig_family</1> |
| 284 | 278 |
<3>$orig_species</3> |
| 285 | 279 |
</_join_words> |
| 286 |
</identifyingtaxonomicname>
|
|
| 280 |
</taxonomicname> |
|
| 287 | 281 |
</taxonlabel> |
| 288 | 282 |
</matched_label_id> |
| 289 | 283 |
<parent_id> |
| ... | ... | |
| 327 | 321 |
</parent_id> |
| 328 | 322 |
</taxonlabel> |
| 329 | 323 |
</parent_id> |
| 324 |
<taxonomicname> |
|
| 325 |
<_join_words> |
|
| 326 |
<1>$orig_family</1> |
|
| 327 |
<3>$orig_species</3> |
|
| 328 |
</_join_words> |
|
| 329 |
</taxonomicname> |
|
| 330 | 330 |
<taxonverbatim> |
| 331 | 331 |
<family>$orig_family</family> |
| 332 | 332 |
<species>$orig_species</species> |
| inputs/CVS/Organism/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
%cover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value, |
| 11 | 11 |
authorObsCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 12 | 12 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 13 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 14 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 13 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 14 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 15 | 15 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial, |
| 16 | 16 |
county,/location/locationplace/*_id/placepath/county, |
| 17 | 17 |
state,/location/locationplace/*_id/placepath/stateprovince, |
| inputs/CVS/Organism/test.xml.ref | ||
|---|---|---|
| 39 | 39 |
<organizationname>TNRS</organizationname> |
| 40 | 40 |
</party> |
| 41 | 41 |
</creator_id> |
| 42 |
<identifyingtaxonomicname>$currentTaxonName sec Weakley 2006</identifyingtaxonomicname>
|
|
| 42 |
<taxonomicname>$currentTaxonName sec Weakley 2006</taxonomicname>
|
|
| 43 | 43 |
</taxonlabel> |
| 44 | 44 |
</matched_label_id> |
| 45 |
<identifyingtaxonomicname>$currentTaxonName sec Weakley 2006</identifyingtaxonomicname>
|
|
| 45 |
<taxonomicname>$currentTaxonName sec Weakley 2006</taxonomicname>
|
|
| 46 | 46 |
<taxonverbatim><binomial>$currentTaxonName sec Weakley 2006</binomial></taxonverbatim> |
| 47 | 47 |
</taxonlabel> |
| 48 | 48 |
</taxonlabel_id> |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 33 | 33 |
HAVING count(*) > 1 |
| 34 | 34 |
-----" |
| 35 | 35 |
acronym,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/party/organizationname, |
| 36 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 37 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 38 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 39 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 40 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 41 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 36 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 37 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 38 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 42 | 39 |
specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 43 | 40 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 44 | 41 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 42 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 43 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 44 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 45 | 45 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 46 | 46 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| 47 | 47 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species, |
| inputs/REMIB/Specimen/test.xml.ref | ||
|---|---|---|
| 72 | 72 |
<organizationname>TNRS</organizationname> |
| 73 | 73 |
</party> |
| 74 | 74 |
</creator_id> |
| 75 |
<identifyingtaxonomicname>
|
|
| 75 |
<taxonomicname> |
|
| 76 | 76 |
<_join_words> |
| 77 | 77 |
<1>$family</1> |
| 78 | 78 |
<2>$genus</2> |
| 79 | 79 |
<3>$specificEpithet</3> |
| 80 | 80 |
</_join_words> |
| 81 |
</identifyingtaxonomicname>
|
|
| 81 |
</taxonomicname> |
|
| 82 | 82 |
</taxonlabel> |
| 83 | 83 |
</matched_label_id> |
| 84 |
<identifyingtaxonomicname> |
|
| 85 |
<_join_words> |
|
| 86 |
<1>$family</1> |
|
| 87 |
<2>$genus</2> |
|
| 88 |
<3>$specificEpithet</3> |
|
| 89 |
</_join_words> |
|
| 90 |
</identifyingtaxonomicname> |
|
| 91 | 84 |
<parent_id> |
| 92 | 85 |
<taxonlabel> |
| 93 | 86 |
<parent_id> |
| ... | ... | |
| 130 | 123 |
</parent_id> |
| 131 | 124 |
</taxonlabel> |
| 132 | 125 |
</parent_id> |
| 126 |
<taxonomicname> |
|
| 127 |
<_join_words> |
|
| 128 |
<1>$family</1> |
|
| 129 |
<2>$genus</2> |
|
| 130 |
<3>$specificEpithet</3> |
|
| 131 |
</_join_words> |
|
| 132 |
</taxonomicname> |
|
| 133 | 133 |
<taxonverbatim> |
| 134 | 134 |
<family>$family</family> |
| 135 | 135 |
<genus>$genus</genus> |
| inputs/CTFS/StemObservation/test.xml.ref | ||
|---|---|---|
| 49 | 49 |
<organizationname>TNRS</organizationname> |
| 50 | 50 |
</party> |
| 51 | 51 |
</creator_id> |
| 52 |
<identifyingtaxonomicname>
|
|
| 52 |
<taxonomicname> |
|
| 53 | 53 |
<_join_words> |
| 54 | 54 |
<1> |
| 55 | 55 |
<_join_words> |
| ... | ... | |
| 61 | 61 |
</1> |
| 62 | 62 |
<2>$SpeciesAuthority</2> |
| 63 | 63 |
</_join_words> |
| 64 |
</identifyingtaxonomicname>
|
|
| 64 |
</taxonomicname> |
|
| 65 | 65 |
</taxonlabel> |
| 66 | 66 |
</matched_label_id> |
| 67 |
<identifyingtaxonomicname> |
|
| 68 |
<_join_words> |
|
| 69 |
<1> |
|
| 70 |
<_join_words> |
|
| 71 |
<1>$Family</1> |
|
| 72 |
<2>$Genus</2> |
|
| 73 |
<3>$SpeciesName</3> |
|
| 74 |
<4>$SubSpeciesName</4> |
|
| 75 |
</_join_words> |
|
| 76 |
</1> |
|
| 77 |
<2>$SpeciesAuthority</2> |
|
| 78 |
</_join_words> |
|
| 79 |
</identifyingtaxonomicname> |
|
| 80 | 67 |
<parent_id> |
| 81 | 68 |
<taxonlabel> |
| 82 | 69 |
<parent_id> |
| ... | ... | |
| 120 | 107 |
</parent_id> |
| 121 | 108 |
</taxonlabel> |
| 122 | 109 |
</parent_id> |
| 110 |
<taxonomicname> |
|
| 111 |
<_join_words> |
|
| 112 |
<1> |
|
| 113 |
<_join_words> |
|
| 114 |
<1>$Family</1> |
|
| 115 |
<2>$Genus</2> |
|
| 116 |
<3>$SpeciesName</3> |
|
| 117 |
<4>$SubSpeciesName</4> |
|
| 118 |
</_join_words> |
|
| 119 |
</1> |
|
| 120 |
<2>$SpeciesAuthority</2> |
|
| 121 |
</_join_words> |
|
| 122 |
</taxonomicname> |
|
| 123 | 123 |
<taxonverbatim> |
| 124 | 124 |
<author>$SpeciesAuthority</author> |
| 125 | 125 |
<family>$Family</family> |
| inputs/CTFS/TaxonOccurrence/test.xml.ref | ||
|---|---|---|
| 20 | 20 |
<organizationname>TNRS</organizationname> |
| 21 | 21 |
</party> |
| 22 | 22 |
</creator_id> |
| 23 |
<identifyingtaxonomicname>
|
|
| 23 |
<taxonomicname> |
|
| 24 | 24 |
<_join_words> |
| 25 | 25 |
<1>$Family</1> |
| 26 | 26 |
<2>$Genus</2> |
| 27 | 27 |
<3>$SpeciesName</3> |
| 28 | 28 |
<4>$SubSpeciesName</4> |
| 29 | 29 |
</_join_words> |
| 30 |
</identifyingtaxonomicname>
|
|
| 30 |
</taxonomicname> |
|
| 31 | 31 |
</taxonlabel> |
| 32 | 32 |
</matched_label_id> |
| 33 |
<identifyingtaxonomicname> |
|
| 34 |
<_join_words> |
|
| 35 |
<1>$Family</1> |
|
| 36 |
<2>$Genus</2> |
|
| 37 |
<3>$SpeciesName</3> |
|
| 38 |
<4>$SubSpeciesName</4> |
|
| 39 |
</_join_words> |
|
| 40 |
</identifyingtaxonomicname> |
|
| 41 | 33 |
<parent_id> |
| 42 | 34 |
<taxonlabel> |
| 43 | 35 |
<parent_id> |
| ... | ... | |
| 81 | 73 |
</parent_id> |
| 82 | 74 |
</taxonlabel> |
| 83 | 75 |
</parent_id> |
| 76 |
<taxonomicname> |
|
| 77 |
<_join_words> |
|
| 78 |
<1>$Family</1> |
|
| 79 |
<2>$Genus</2> |
|
| 80 |
<3>$SpeciesName</3> |
|
| 81 |
<4>$SubSpeciesName</4> |
|
| 82 |
</_join_words> |
|
| 83 |
</taxonomicname> |
|
| 84 | 84 |
<taxonverbatim> |
| 85 | 85 |
<family>$Family</family> |
| 86 | 86 |
<genus>$Genus</genus> |
| inputs/FIA/Organism/test.xml.ref | ||
|---|---|---|
| 70 | 70 |
<organizationname>TNRS</organizationname> |
| 71 | 71 |
</party> |
| 72 | 72 |
</creator_id> |
| 73 |
<identifyingtaxonomicname>
|
|
| 73 |
<taxonomicname> |
|
| 74 | 74 |
<_join_words> |
| 75 | 75 |
<2>$Genus</2> |
| 76 | 76 |
<3>$SpecificEpithet</3> |
| 77 | 77 |
</_join_words> |
| 78 |
</identifyingtaxonomicname>
|
|
| 78 |
</taxonomicname> |
|
| 79 | 79 |
</taxonlabel> |
| 80 | 80 |
</matched_label_id> |
| 81 |
<identifyingtaxonomicname> |
|
| 82 |
<_join_words> |
|
| 83 |
<2>$Genus</2> |
|
| 84 |
<3>$SpecificEpithet</3> |
|
| 85 |
</_join_words> |
|
| 86 |
</identifyingtaxonomicname> |
|
| 87 | 81 |
<parent_id> |
| 88 | 82 |
<taxonlabel> |
| 89 | 83 |
<parent_id> |
| ... | ... | |
| 120 | 114 |
</parent_id> |
| 121 | 115 |
</taxonlabel> |
| 122 | 116 |
</parent_id> |
| 117 |
<taxonomicname> |
|
| 118 |
<_join_words> |
|
| 119 |
<2>$Genus</2> |
|
| 120 |
<3>$SpecificEpithet</3> |
|
| 121 |
</_join_words> |
|
| 122 |
</taxonomicname> |
|
| 123 | 123 |
<taxonverbatim> |
| 124 | 124 |
<genus>$Genus</genus> |
| 125 | 125 |
<species>$SpecificEpithet</species> |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 126 | 126 |
<organizationname>TNRS</organizationname> |
| 127 | 127 |
</party> |
| 128 | 128 |
</creator_id> |
| 129 |
<identifyingtaxonomicname>
|
|
| 129 |
<taxonomicname> |
|
| 130 | 130 |
<_join_words> |
| 131 | 131 |
<1> |
| 132 | 132 |
<_join_words> |
| ... | ... | |
| 148 | 148 |
</1> |
| 149 | 149 |
<2>$auth</2> |
| 150 | 150 |
</_join_words> |
| 151 |
</identifyingtaxonomicname>
|
|
| 151 |
</taxonomicname> |
|
| 152 | 152 |
</taxonlabel> |
| 153 | 153 |
</matched_label_id> |
| 154 |
<identifyingtaxonomicname> |
|
| 155 |
<_join_words> |
|
| 156 |
<1> |
|
| 157 |
<_join_words> |
|
| 158 |
<1>$Family</1> |
|
| 159 |
<2>$Genus</2> |
|
| 160 |
<3>$Species</3> |
|
| 161 |
<5> |
|
| 162 |
<_join_words> |
|
| 163 |
<1> |
|
| 164 |
<_if name="if has infraspecificEpithet"> |
|
| 165 |
<cond>$infra_ep_1</cond> |
|
| 166 |
<then>$infra_rank_1</then> |
|
| 167 |
</_if> |
|
| 168 |
</1> |
|
| 169 |
<2>$infra_ep_1</2> |
|
| 170 |
</_join_words> |
|
| 171 |
</5> |
|
| 172 |
</_join_words> |
|
| 173 |
</1> |
|
| 174 |
<2>$auth</2> |
|
| 175 |
</_join_words> |
|
| 176 |
</identifyingtaxonomicname> |
|
| 177 | 154 |
<parent_id> |
| 178 | 155 |
<taxonlabel> |
| 179 | 156 |
<rank>$infra_rank_1</rank> |
| ... | ... | |
| 220 | 197 |
</taxonlabel> |
| 221 | 198 |
</parent_id> |
| 222 | 199 |
<rank>$infra_rank_1</rank> |
| 200 |
<taxonomicname> |
|
| 201 |
<_join_words> |
|
| 202 |
<1> |
|
| 203 |
<_join_words> |
|
| 204 |
<1>$Family</1> |
|
| 205 |
<2>$Genus</2> |
|
| 206 |
<3>$Species</3> |
|
| 207 |
<5> |
|
| 208 |
<_join_words> |
|
| 209 |
<1> |
|
| 210 |
<_if name="if has infraspecificEpithet"> |
|
| 211 |
<cond>$infra_ep_1</cond> |
|
| 212 |
<then>$infra_rank_1</then> |
|
| 213 |
</_if> |
|
| 214 |
</1> |
|
| 215 |
<2>$infra_ep_1</2> |
|
| 216 |
</_join_words> |
|
| 217 |
</5> |
|
| 218 |
</_join_words> |
|
| 219 |
</1> |
|
| 220 |
<2>$auth</2> |
|
| 221 |
</_join_words> |
|
| 222 |
</taxonomicname> |
|
| 223 | 223 |
<taxonverbatim> |
| 224 | 224 |
<author>$auth</author> |
| 225 | 225 |
<family>$Family</family> |
| ... | ... | |
| 235 | 235 |
<isoriginal>true</isoriginal> |
| 236 | 236 |
<taxonlabel_id> |
| 237 | 237 |
<taxonlabel> |
| 238 |
<identifyingtaxonomicname> |
|
| 239 |
<_join_words> |
|
| 240 |
<1>$OrigFamily</1> |
|
| 241 |
<2>$OrigGenus</2> |
|
| 242 |
<3>$OrigSpecies</3> |
|
| 243 |
</_join_words> |
|
| 244 |
</identifyingtaxonomicname> |
|
| 245 | 238 |
<matched_label_id> |
| 246 | 239 |
<taxonlabel> |
| 247 | 240 |
<creator_id> |
| ... | ... | |
| 250 | 243 |
<organizationname>TNRS</organizationname> |
| 251 | 244 |
</party> |
| 252 | 245 |
</creator_id> |
| 253 |
<identifyingtaxonomicname>
|
|
| 246 |
<taxonomicname> |
|
| 254 | 247 |
<_join_words> |
| 255 | 248 |
<1>$OrigFamily</1> |
| 256 | 249 |
<2>$OrigGenus</2> |
| 257 | 250 |
<3>$OrigSpecies</3> |
| 258 | 251 |
</_join_words> |
| 259 |
</identifyingtaxonomicname>
|
|
| 252 |
</taxonomicname> |
|
| 260 | 253 |
</taxonlabel> |
| 261 | 254 |
</matched_label_id> |
| 262 | 255 |
<parent_id> |
| ... | ... | |
| 301 | 294 |
</parent_id> |
| 302 | 295 |
</taxonlabel> |
| 303 | 296 |
</parent_id> |
| 297 |
<taxonomicname> |
|
| 298 |
<_join_words> |
|
| 299 |
<1>$OrigFamily</1> |
|
| 300 |
<2>$OrigGenus</2> |
|
| 301 |
<3>$OrigSpecies</3> |
|
| 302 |
</_join_words> |
|
| 303 |
</taxonomicname> |
|
| 304 | 304 |
<taxonverbatim> |
| 305 | 305 |
<family>$OrigFamily</family> |
| 306 | 306 |
<genus>$OrigGenus</genus> |
| inputs/U/Specimen/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1", |
| 15 | 15 |
ID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 16 | 16 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 17 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 18 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 17 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 18 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 19 | 19 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| 20 | 20 |
Detby,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
| 21 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 22 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/identifyingtaxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 23 | 21 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 24 | 22 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 23 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 24 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 25 | 25 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family, |
| 26 | 26 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus, |
| 27 | 27 |
Detyy,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 117 | 117 |
<organizationname>TNRS</organizationname> |
| 118 | 118 |
</party> |
| 119 | 119 |
</creator_id> |
| 120 |
<identifyingtaxonomicname>
|
|
| 120 |
<taxonomicname> |
|
| 121 | 121 |
<_alt> |
| 122 | 122 |
<1>$ScientificNameAuthor</1> |
| 123 | 123 |
<2> |
| ... | ... | |
| 134 | 134 |
</_alt> |
| 135 | 135 |
</2> |
| 136 | 136 |
</_alt> |
| 137 |
</identifyingtaxonomicname> |
|
| 137 |
</taxonomicname> |
|
Also available in: Unified diff
schemas/vegbien.sql: taxonlabel: Renamed identifyingtaxonomicname to taxonomicname because the taxonomicname provided by the datasource is now in taxonverbatim, so there is no name collision. Note that both of these fields store the same type of information, but taxonlabel's is autogenerated while taxonverbatim's is verbatim (and is only set if provided by the datasource).