Revision 5656
Added by Aaron Marcuse-Kubitza over 12 years ago
| test.xml.ref | ||
|---|---|---|
| 12 | 12 |
<_taxonlabel_set_matched_label_id> |
| 13 | 13 |
<matched_label_id> |
| 14 | 14 |
<taxonlabel> |
| 15 |
<identifyingtaxonomicname> |
|
| 16 |
<_join_words> |
|
| 17 |
<1> |
|
| 18 |
<_alt> |
|
| 19 |
<1>$Accepted_name</1> |
|
| 20 |
<2>$Accepted_name_family</2> |
|
| 21 |
</_alt> |
|
| 22 |
</1> |
|
| 23 |
<2>$Accepted_name_author</2> |
|
| 24 |
</_join_words> |
|
| 25 |
</identifyingtaxonomicname> |
|
| 26 | 15 |
<parent_id> |
| 27 | 16 |
<taxonlabel> |
| 28 | 17 |
<parent_id> |
| ... | ... | |
| 78 | 67 |
</taxonlabel> |
| 79 | 68 |
</parent_id> |
| 80 | 69 |
<rank>$Accepted_name_rank</rank> |
| 70 |
<taxonomicname> |
|
| 71 |
<_join_words> |
|
| 72 |
<1> |
|
| 73 |
<_alt> |
|
| 74 |
<1>$Accepted_name</1> |
|
| 75 |
<2>$Accepted_name_family</2> |
|
| 76 |
</_alt> |
|
| 77 |
</1> |
|
| 78 |
<2>$Accepted_name_author</2> |
|
| 79 |
</_join_words> |
|
| 80 |
</taxonomicname> |
|
| 81 | 81 |
<taxonverbatim> |
| 82 | 82 |
<author>$Accepted_name_author</author> |
| 83 | 83 |
<binomial>$Accepted_name</binomial> |
| ... | ... | |
| 87 | 87 |
</taxonlabel> |
| 88 | 88 |
</matched_label_id> |
| 89 | 89 |
</_taxonlabel_set_matched_label_id> |
| 90 |
<identifyingtaxonomicname> |
|
| 91 |
<_join_words> |
|
| 92 |
<1> |
|
| 93 |
<_alt> |
|
| 94 |
<1>$Name_matched</1> |
|
| 95 |
<2> |
|
| 96 |
<_join_words> |
|
| 97 |
<1>$Name_matched_accepted_family</1> |
|
| 98 |
<2>$Genus_matched</2> |
|
| 99 |
<3>$Specific_epithet_matched</3> |
|
| 100 |
<5> |
|
| 101 |
<_join_words> |
|
| 102 |
<1> |
|
| 103 |
<_if name="if has infraspecificEpithet"> |
|
| 104 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 105 |
<then>$Name_matched_rank</then> |
|
| 106 |
</_if> |
|
| 107 |
</1> |
|
| 108 |
<2>$Infraspecific_epithet_matched</2> |
|
| 109 |
</_join_words> |
|
| 110 |
</5> |
|
| 111 |
</_join_words> |
|
| 112 |
</2> |
|
| 113 |
</_alt> |
|
| 114 |
</1> |
|
| 115 |
<2>$Name_matched_author</2> |
|
| 116 |
</_join_words> |
|
| 117 |
</identifyingtaxonomicname> |
|
| 118 | 90 |
<parent_id> |
| 119 | 91 |
<taxonlabel> |
| 120 | 92 |
<rank>$Name_matched_rank</rank> |
| ... | ... | |
| 163 | 135 |
<rank>$Name_matched_rank</rank> |
| 164 | 136 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
| 165 | 137 |
<taxonlabel fkey="matched_label_id"> |
| 166 |
<identifyingtaxonomicname>$Name_submitted</identifyingtaxonomicname> |
|
| 167 | 138 |
<matched_label_fit_fraction> |
| 168 | 139 |
<_max> |
| 169 | 140 |
<1>$Family_score</1> |
| ... | ... | |
| 172 | 143 |
<4>$Overall_score</4> |
| 173 | 144 |
</_max> |
| 174 | 145 |
</matched_label_fit_fraction> |
| 146 |
<taxonomicname>$Name_submitted</taxonomicname> |
|
| 175 | 147 |
<taxonverbatim> |
| 176 | 148 |
<author>$Author_matched</author> |
| 177 | 149 |
<binomial>$Name_matched</binomial> |
| ... | ... | |
| 182 | 154 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
| 183 | 155 |
</taxonverbatim> |
| 184 | 156 |
</taxonlabel> |
| 157 |
<taxonomicname> |
|
| 158 |
<_join_words> |
|
| 159 |
<1> |
|
| 160 |
<_alt> |
|
| 161 |
<1>$Name_matched</1> |
|
| 162 |
<2> |
|
| 163 |
<_join_words> |
|
| 164 |
<1>$Name_matched_accepted_family</1> |
|
| 165 |
<2>$Genus_matched</2> |
|
| 166 |
<3>$Specific_epithet_matched</3> |
|
| 167 |
<5> |
|
| 168 |
<_join_words> |
|
| 169 |
<1> |
|
| 170 |
<_if name="if has infraspecificEpithet"> |
|
| 171 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 172 |
<then>$Name_matched_rank</then> |
|
| 173 |
</_if> |
|
| 174 |
</1> |
|
| 175 |
<2>$Infraspecific_epithet_matched</2> |
|
| 176 |
</_join_words> |
|
| 177 |
</5> |
|
| 178 |
</_join_words> |
|
| 179 |
</2> |
|
| 180 |
</_alt> |
|
| 181 |
</1> |
|
| 182 |
<2>$Name_matched_author</2> |
|
| 183 |
</_join_words> |
|
| 184 |
</taxonomicname> |
|
| 185 | 185 |
<taxonstatus>$Taxonomic_status</taxonstatus> |
| 186 | 186 |
<taxonverbatim> |
| 187 | 187 |
<author>$Name_matched_author</author> |
Also available in: Unified diff
schemas/vegbien.sql: taxonlabel: Renamed identifyingtaxonomicname to taxonomicname because the taxonomicname provided by the datasource is now in taxonverbatim, so there is no name collision. Note that both of these fields store the same type of information, but taxonlabel's is autogenerated while taxonverbatim's is verbatim (and is only set if provided by the datasource).