Revision 5657
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<locationevent> |
| 8 | 8 |
<taxonoccurrence> |
| 9 | 9 |
<taxondetermination> |
| 10 |
<taxonlabel_id>
|
|
| 11 |
<taxonlabel>
|
|
| 12 |
<_taxonlabel_set_matched_label_id>
|
|
| 13 |
<matched_label_id>
|
|
| 14 |
<taxonlabel>
|
|
| 15 |
<parent_id>
|
|
| 10 |
<taxonverbatim_id>
|
|
| 11 |
<taxonverbatim>
|
|
| 12 |
<taxonlabel_id>
|
|
| 13 |
<taxonlabel>
|
|
| 14 |
<_taxonlabel_set_matched_label_id>
|
|
| 15 |
<matched_label_id>
|
|
| 16 | 16 |
<taxonlabel> |
| 17 | 17 |
<parent_id> |
| 18 | 18 |
<taxonlabel> |
| 19 |
<rank>cultivar</rank> |
|
| 20 | 19 |
<parent_id> |
| 21 | 20 |
<taxonlabel> |
| 22 |
<rank>forma</rank>
|
|
| 21 |
<rank>cultivar</rank>
|
|
| 23 | 22 |
<parent_id> |
| 24 | 23 |
<taxonlabel> |
| 25 |
<rank>variety</rank>
|
|
| 24 |
<rank>forma</rank>
|
|
| 26 | 25 |
<parent_id> |
| 27 | 26 |
<taxonlabel> |
| 28 |
<rank>subspecies</rank>
|
|
| 27 |
<rank>variety</rank>
|
|
| 29 | 28 |
<parent_id> |
| 30 | 29 |
<taxonlabel> |
| 31 |
<rank>species</rank> |
|
| 30 |
<rank>subspecies</rank>
|
|
| 32 | 31 |
<parent_id> |
| 33 | 32 |
<taxonlabel> |
| 34 |
<rank>genus</rank>
|
|
| 33 |
<rank>species</rank>
|
|
| 35 | 34 |
<parent_id> |
| 36 | 35 |
<taxonlabel> |
| 37 |
<rank>family</rank>
|
|
| 38 |
<matched_label_id>
|
|
| 36 |
<rank>genus</rank>
|
|
| 37 |
<parent_id>
|
|
| 39 | 38 |
<taxonlabel> |
| 40 |
<creator_id> |
|
| 41 |
<party> |
|
| 42 |
<creator_id>0</creator_id> |
|
| 43 |
<organizationname>NCBI</organizationname> |
|
| 44 |
</party> |
|
| 45 |
</creator_id> |
|
| 46 | 39 |
<rank>family</rank> |
| 40 |
<matched_label_id> |
|
| 41 |
<taxonlabel> |
|
| 42 |
<creator_id> |
|
| 43 |
<party> |
|
| 44 |
<creator_id>0</creator_id> |
|
| 45 |
<organizationname>NCBI</organizationname> |
|
| 46 |
</party> |
|
| 47 |
</creator_id> |
|
| 48 |
<rank>family</rank> |
|
| 49 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
|
| 50 |
</taxonlabel> |
|
| 51 |
</matched_label_id> |
|
| 47 | 52 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
| 48 | 53 |
</taxonlabel> |
| 49 |
</matched_label_id> |
|
| 50 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
|
| 54 |
</parent_id> |
|
| 51 | 55 |
</taxonlabel> |
| 52 | 56 |
</parent_id> |
| 53 | 57 |
</taxonlabel> |
| ... | ... | |
| 60 | 64 |
</parent_id> |
| 61 | 65 |
</taxonlabel> |
| 62 | 66 |
</parent_id> |
| 67 |
<rank>$Accepted_name_rank</rank> |
|
| 68 |
<taxonverbatim><verbatimrank>$Accepted_name_rank</verbatimrank></taxonverbatim> |
|
| 63 | 69 |
</taxonlabel> |
| 64 | 70 |
</parent_id> |
| 65 | 71 |
<rank>$Accepted_name_rank</rank> |
| 66 |
<taxonverbatim><verbatimrank>$Accepted_name_rank</verbatimrank></taxonverbatim> |
|
| 72 |
<taxonomicname> |
|
| 73 |
<_join_words> |
|
| 74 |
<1> |
|
| 75 |
<_alt> |
|
| 76 |
<1>$Accepted_name</1> |
|
| 77 |
<2>$Accepted_name_family</2> |
|
| 78 |
</_alt> |
|
| 79 |
</1> |
|
| 80 |
<2>$Accepted_name_author</2> |
|
| 81 |
</_join_words> |
|
| 82 |
</taxonomicname> |
|
| 83 |
<taxonverbatim> |
|
| 84 |
<author>$Accepted_name_author</author> |
|
| 85 |
<binomial>$Accepted_name</binomial> |
|
| 86 |
<family>$Accepted_name_family</family> |
|
| 87 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
|
| 88 |
</taxonverbatim> |
|
| 67 | 89 |
</taxonlabel> |
| 68 |
</parent_id> |
|
| 69 |
<rank>$Accepted_name_rank</rank> |
|
| 70 |
<taxonomicname> |
|
| 71 |
<_join_words> |
|
| 72 |
<1> |
|
| 73 |
<_alt> |
|
| 74 |
<1>$Accepted_name</1> |
|
| 75 |
<2>$Accepted_name_family</2> |
|
| 76 |
</_alt> |
|
| 77 |
</1> |
|
| 78 |
<2>$Accepted_name_author</2> |
|
| 79 |
</_join_words> |
|
| 80 |
</taxonomicname> |
|
| 81 |
<taxonverbatim> |
|
| 82 |
<author>$Accepted_name_author</author> |
|
| 83 |
<binomial>$Accepted_name</binomial> |
|
| 84 |
<family>$Accepted_name_family</family> |
|
| 85 |
<verbatimrank>$Accepted_name_rank</verbatimrank> |
|
| 86 |
</taxonverbatim> |
|
| 87 |
</taxonlabel> |
|
| 88 |
</matched_label_id> |
|
| 89 |
</_taxonlabel_set_matched_label_id> |
|
| 90 |
<parent_id> |
|
| 91 |
<taxonlabel> |
|
| 92 |
<rank>$Name_matched_rank</rank> |
|
| 93 |
<taxonverbatim><verbatimrank>$Name_matched_rank</verbatimrank></taxonverbatim> |
|
| 90 |
</matched_label_id> |
|
| 91 |
</_taxonlabel_set_matched_label_id> |
|
| 94 | 92 |
<parent_id> |
| 95 | 93 |
<taxonlabel> |
| 96 |
<rank>cultivar</rank> |
|
| 94 |
<rank>$Name_matched_rank</rank> |
|
| 95 |
<taxonverbatim><verbatimrank>$Name_matched_rank</verbatimrank></taxonverbatim> |
|
| 97 | 96 |
<parent_id> |
| 98 | 97 |
<taxonlabel> |
| 99 |
<rank>forma</rank>
|
|
| 98 |
<rank>cultivar</rank>
|
|
| 100 | 99 |
<parent_id> |
| 101 | 100 |
<taxonlabel> |
| 102 |
<rank>variety</rank>
|
|
| 101 |
<rank>forma</rank>
|
|
| 103 | 102 |
<parent_id> |
| 104 | 103 |
<taxonlabel> |
| 105 |
<rank>subspecies</rank>
|
|
| 104 |
<rank>variety</rank>
|
|
| 106 | 105 |
<parent_id> |
| 107 | 106 |
<taxonlabel> |
| 108 |
<rank>species</rank> |
|
| 109 |
<taxonepithet>$Specific_epithet_matched</taxonepithet> |
|
| 107 |
<rank>subspecies</rank> |
|
| 110 | 108 |
<parent_id> |
| 111 | 109 |
<taxonlabel> |
| 112 |
<rank>genus</rank>
|
|
| 113 |
<taxonepithet>$Genus_matched</taxonepithet>
|
|
| 110 |
<rank>species</rank>
|
|
| 111 |
<taxonepithet>$Specific_epithet_matched</taxonepithet>
|
|
| 114 | 112 |
<parent_id> |
| 115 | 113 |
<taxonlabel> |
| 116 |
<rank>family</rank> |
|
| 117 |
<taxonepithet>$Name_matched_accepted_family</taxonepithet> |
|
| 114 |
<rank>genus</rank> |
|
| 115 |
<taxonepithet>$Genus_matched</taxonepithet> |
|
| 116 |
<parent_id> |
|
| 117 |
<taxonlabel> |
|
| 118 |
<rank>family</rank> |
|
| 119 |
<taxonepithet>$Name_matched_accepted_family</taxonepithet> |
|
| 120 |
</taxonlabel> |
|
| 121 |
</parent_id> |
|
| 118 | 122 |
</taxonlabel> |
| 119 | 123 |
</parent_id> |
| 120 | 124 |
</taxonlabel> |
| ... | ... | |
| 127 | 131 |
</parent_id> |
| 128 | 132 |
</taxonlabel> |
| 129 | 133 |
</parent_id> |
| 134 |
<taxonepithet>$Infraspecific_epithet_matched</taxonepithet> |
|
| 130 | 135 |
</taxonlabel> |
| 131 | 136 |
</parent_id> |
| 132 |
<taxonepithet>$Infraspecific_epithet_matched</taxonepithet> |
|
| 133 |
</taxonlabel> |
|
| 134 |
</parent_id> |
|
| 135 |
<rank>$Name_matched_rank</rank> |
|
| 136 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
|
| 137 |
<taxonlabel fkey="matched_label_id"> |
|
| 138 |
<matched_label_fit_fraction> |
|
| 139 |
<_max> |
|
| 140 |
<1>$Family_score</1> |
|
| 141 |
<2>$Genus_score</2> |
|
| 142 |
<3>$Specific_epithet_score</3> |
|
| 143 |
<4>$Overall_score</4> |
|
| 144 |
</_max> |
|
| 145 |
</matched_label_fit_fraction> |
|
| 146 |
<taxonomicname>$Name_submitted</taxonomicname> |
|
| 147 |
<taxonverbatim> |
|
| 148 |
<author>$Author_matched</author> |
|
| 149 |
<binomial>$Name_matched</binomial> |
|
| 150 |
<family>$Family_matched</family> |
|
| 151 |
<genus>$Genus_matched</genus> |
|
| 152 |
<morphospecies>$Unmatched_terms</morphospecies> |
|
| 153 |
<species>$Specific_epithet_matched</species> |
|
| 154 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
|
| 155 |
</taxonverbatim> |
|
| 156 |
</taxonlabel> |
|
| 157 |
<taxonomicname> |
|
| 158 |
<_join_words> |
|
| 159 |
<1> |
|
| 160 |
<_alt> |
|
| 161 |
<1>$Name_matched</1> |
|
| 162 |
<2> |
|
| 163 |
<_join_words> |
|
| 164 |
<1>$Name_matched_accepted_family</1> |
|
| 165 |
<2>$Genus_matched</2> |
|
| 166 |
<3>$Specific_epithet_matched</3> |
|
| 167 |
<5> |
|
| 137 |
<rank>$Name_matched_rank</rank> |
|
| 138 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
|
| 139 |
<taxonlabel fkey="matched_label_id"> |
|
| 140 |
<matched_label_fit_fraction> |
|
| 141 |
<_max> |
|
| 142 |
<1>$Family_score</1> |
|
| 143 |
<2>$Genus_score</2> |
|
| 144 |
<3>$Specific_epithet_score</3> |
|
| 145 |
<4>$Overall_score</4> |
|
| 146 |
</_max> |
|
| 147 |
</matched_label_fit_fraction> |
|
| 148 |
<taxonomicname>$Name_submitted</taxonomicname> |
|
| 149 |
<taxonverbatim> |
|
| 150 |
<author>$Author_matched</author> |
|
| 151 |
<binomial>$Name_matched</binomial> |
|
| 152 |
<family>$Family_matched</family> |
|
| 153 |
<genus>$Genus_matched</genus> |
|
| 154 |
<morphospecies>$Unmatched_terms</morphospecies> |
|
| 155 |
<species>$Specific_epithet_matched</species> |
|
| 156 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
|
| 157 |
</taxonverbatim> |
|
| 158 |
</taxonlabel> |
|
| 159 |
<taxonomicname> |
|
| 160 |
<_join_words> |
|
| 161 |
<1> |
|
| 162 |
<_alt> |
|
| 163 |
<1>$Name_matched</1> |
|
| 164 |
<2> |
|
| 168 | 165 |
<_join_words> |
| 169 |
<1> |
|
| 170 |
<_if name="if has infraspecificEpithet"> |
|
| 171 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 172 |
<then>$Name_matched_rank</then> |
|
| 173 |
</_if> |
|
| 174 |
</1> |
|
| 175 |
<2>$Infraspecific_epithet_matched</2> |
|
| 166 |
<1>$Name_matched_accepted_family</1> |
|
| 167 |
<2>$Genus_matched</2> |
|
| 168 |
<3>$Specific_epithet_matched</3> |
|
| 169 |
<5> |
|
| 170 |
<_join_words> |
|
| 171 |
<1> |
|
| 172 |
<_if name="if has infraspecificEpithet"> |
|
| 173 |
<cond>$Infraspecific_epithet_matched</cond> |
|
| 174 |
<then>$Name_matched_rank</then> |
|
| 175 |
</_if> |
|
| 176 |
</1> |
|
| 177 |
<2>$Infraspecific_epithet_matched</2> |
|
| 178 |
</_join_words> |
|
| 179 |
</5> |
|
| 176 | 180 |
</_join_words> |
| 177 |
</5> |
|
| 178 |
</_join_words> |
|
| 179 |
</2> |
|
| 180 |
</_alt> |
|
| 181 |
</1> |
|
| 182 |
<2>$Name_matched_author</2> |
|
| 183 |
</_join_words> |
|
| 184 |
</taxonomicname> |
|
| 185 |
<taxonstatus>$Taxonomic_status</taxonstatus> |
|
| 186 |
<taxonverbatim> |
|
| 187 |
<author>$Name_matched_author</author> |
|
| 188 |
<binomial>$Name_matched</binomial> |
|
| 189 |
<family>$Name_matched_accepted_family</family> |
|
| 190 |
<genus>$Genus_matched</genus> |
|
| 191 |
<species>$Specific_epithet_matched</species> |
|
| 192 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
|
| 193 |
</taxonverbatim> |
|
| 194 |
</taxonlabel> |
|
| 195 |
</taxonlabel_id> |
|
| 181 |
</2> |
|
| 182 |
</_alt> |
|
| 183 |
</1> |
|
| 184 |
<2>$Name_matched_author</2> |
|
| 185 |
</_join_words> |
|
| 186 |
</taxonomicname> |
|
| 187 |
<taxonstatus>$Taxonomic_status</taxonstatus> |
|
| 188 |
</taxonlabel> |
|
| 189 |
</taxonlabel_id> |
|
| 190 |
<author>$Name_matched_author</author> |
|
| 191 |
<binomial>$Name_matched</binomial> |
|
| 192 |
<family>$Name_matched_accepted_family</family> |
|
| 193 |
<genus>$Genus_matched</genus> |
|
| 194 |
<species>$Specific_epithet_matched</species> |
|
| 195 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
|
| 196 |
</taxonverbatim> |
|
| 197 |
</taxonverbatim_id> |
|
| 196 | 198 |
</taxondetermination> |
| 197 | 199 |
</taxonoccurrence> |
| 198 | 200 |
</locationevent> |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 30 | 30 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 31 | 31 |
GlobalUniqueIdentifier,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 32 | 32 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 33 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/1",Contains the binomial in addition to the authority |
|
| 34 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 36 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 37 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 38 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4", |
|
| 39 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 40 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 41 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 42 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
|
| 43 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
|
| 44 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 45 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 46 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 47 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet", |
|
| 48 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
|
| 49 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet", |
|
| 50 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
|
| 51 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/1,Contains the binomial in addition to the authority |
|
| 52 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 53 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 54 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 55 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 56 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 57 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial,
|
|
| 58 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family,
|
|
| 59 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus,
|
|
| 60 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species,
|
|
| 61 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/taxonomicname,Contains the binomial in addition to the authority
|
|
| 33 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/1",Contains the binomial in addition to the authority
|
|
| 34 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 35 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 36 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 37 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 38 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 39 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 40 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 41 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 42 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 43 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 44 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 45 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 46 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 47 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
|
| 48 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
|
| 49 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
|
| 50 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
|
| 51 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/1,Contains the binomial in addition to the authority
|
|
| 52 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 53 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 54 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 55 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
| 56 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 57 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
|
| 58 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 59 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 60 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species, |
|
| 61 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,Contains the binomial in addition to the authority |
|
| 62 | 62 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 63 | 63 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 64 | 64 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 47 | 47 |
</aggregateoccurrence> |
| 48 | 48 |
<taxondetermination> |
| 49 | 49 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
| 50 |
<taxonlabel_id>
|
|
| 51 |
<taxonlabel>
|
|
| 52 |
<matched_label_id>
|
|
| 50 |
<taxonverbatim_id>
|
|
| 51 |
<taxonverbatim>
|
|
| 52 |
<taxonlabel_id>
|
|
| 53 | 53 |
<taxonlabel> |
| 54 |
<matched_label_id> |
|
| 55 |
<taxonlabel> |
|
| 56 |
<creator_id> |
|
| 57 |
<party> |
|
| 58 |
<creator_id>0</creator_id> |
|
| 59 |
<organizationname>TNRS</organizationname> |
|
| 60 |
</party> |
|
| 61 |
</creator_id> |
|
| 62 |
<taxonomicname> |
|
| 63 |
<_join_words> |
|
| 64 |
<1> |
|
| 65 |
<_alt> |
|
| 66 |
<1>$ScientificName</1> |
|
| 67 |
<2> |
|
| 68 |
<_join_words> |
|
| 69 |
<1>$Family</1> |
|
| 70 |
<2>$Genus</2> |
|
| 71 |
<3>$SpecificEpithet</3> |
|
| 72 |
<5>$InfraspecificEpithet</5> |
|
| 73 |
</_join_words> |
|
| 74 |
</2> |
|
| 75 |
</_alt> |
|
| 76 |
</1> |
|
| 77 |
<2>$AuthorOfScientificName</2> |
|
| 78 |
</_join_words> |
|
| 79 |
</taxonomicname> |
|
| 80 |
</taxonlabel> |
|
| 81 |
</matched_label_id> |
|
| 54 | 82 |
<creator_id> |
| 55 |
<party>
|
|
| 56 |
<creator_id>0</creator_id>
|
|
| 57 |
<organizationname>TNRS</organizationname>
|
|
| 58 |
</party>
|
|
| 83 |
<_simplifyPath>
|
|
| 84 |
<next>creator_id</next>
|
|
| 85 |
<path><party><fullname>$IdentifiedBy</fullname></party></path>
|
|
| 86 |
</_simplifyPath>
|
|
| 59 | 87 |
</creator_id> |
| 60 |
<taxonomicname> |
|
| 61 |
<_join_words> |
|
| 62 |
<1> |
|
| 63 |
<_alt> |
|
| 64 |
<1>$ScientificName</1> |
|
| 65 |
<2> |
|
| 66 |
<_join_words> |
|
| 67 |
<1>$Family</1> |
|
| 68 |
<2>$Genus</2> |
|
| 69 |
<3>$SpecificEpithet</3> |
|
| 70 |
<5>$InfraspecificEpithet</5> |
|
| 71 |
</_join_words> |
|
| 72 |
</2> |
|
| 73 |
</_alt> |
|
| 74 |
</1> |
|
| 75 |
<2>$AuthorOfScientificName</2> |
|
| 76 |
</_join_words> |
|
| 77 |
</taxonomicname> |
|
| 78 |
</taxonlabel> |
|
| 79 |
</matched_label_id> |
|
| 80 |
<creator_id> |
|
| 81 |
<_simplifyPath> |
|
| 82 |
<next>creator_id</next> |
|
| 83 |
<path><party><fullname>$IdentifiedBy</fullname></party></path> |
|
| 84 |
</_simplifyPath> |
|
| 85 |
</creator_id> |
|
| 86 |
<parent_id> |
|
| 87 |
<taxonlabel> |
|
| 88 | 88 |
<parent_id> |
| 89 | 89 |
<taxonlabel> |
| 90 |
<rank>cultivar</rank> |
|
| 91 | 90 |
<parent_id> |
| 92 | 91 |
<taxonlabel> |
| 93 |
<rank>forma</rank>
|
|
| 92 |
<rank>cultivar</rank>
|
|
| 94 | 93 |
<parent_id> |
| 95 | 94 |
<taxonlabel> |
| 96 |
<rank>variety</rank>
|
|
| 95 |
<rank>forma</rank>
|
|
| 97 | 96 |
<parent_id> |
| 98 | 97 |
<taxonlabel> |
| 99 |
<rank>subspecies</rank>
|
|
| 98 |
<rank>variety</rank>
|
|
| 100 | 99 |
<parent_id> |
| 101 | 100 |
<taxonlabel> |
| 102 |
<rank>species</rank> |
|
| 103 |
<taxonepithet>$SpecificEpithet</taxonepithet> |
|
| 101 |
<rank>subspecies</rank> |
|
| 104 | 102 |
<parent_id> |
| 105 | 103 |
<taxonlabel> |
| 106 |
<rank>genus</rank>
|
|
| 107 |
<taxonepithet>$Genus</taxonepithet>
|
|
| 104 |
<rank>species</rank>
|
|
| 105 |
<taxonepithet>$SpecificEpithet</taxonepithet>
|
|
| 108 | 106 |
<parent_id> |
| 109 | 107 |
<taxonlabel> |
| 110 |
<rank>family</rank> |
|
| 111 |
<taxonepithet>$Family</taxonepithet> |
|
| 108 |
<rank>genus</rank> |
|
| 109 |
<taxonepithet>$Genus</taxonepithet> |
|
| 110 |
<parent_id> |
|
| 111 |
<taxonlabel> |
|
| 112 |
<rank>family</rank> |
|
| 113 |
<taxonepithet>$Family</taxonepithet> |
|
| 114 |
</taxonlabel> |
|
| 115 |
</parent_id> |
|
| 112 | 116 |
</taxonlabel> |
| 113 | 117 |
</parent_id> |
| 114 | 118 |
</taxonlabel> |
| ... | ... | |
| 121 | 125 |
</parent_id> |
| 122 | 126 |
</taxonlabel> |
| 123 | 127 |
</parent_id> |
| 128 |
<taxonepithet>$InfraspecificEpithet</taxonepithet> |
|
| 124 | 129 |
</taxonlabel> |
| 125 | 130 |
</parent_id> |
| 126 |
<taxonepithet>$InfraspecificEpithet</taxonepithet> |
|
| 131 |
<taxonomicname> |
|
| 132 |
<_join_words> |
|
| 133 |
<1> |
|
| 134 |
<_alt> |
|
| 135 |
<1>$ScientificName</1> |
|
| 136 |
<2> |
|
| 137 |
<_join_words> |
|
| 138 |
<1>$Family</1> |
|
| 139 |
<2>$Genus</2> |
|
| 140 |
<3>$SpecificEpithet</3> |
|
| 141 |
<5>$InfraspecificEpithet</5> |
|
| 142 |
</_join_words> |
|
| 143 |
</2> |
|
| 144 |
</_alt> |
|
| 145 |
</1> |
|
| 146 |
<2>$AuthorOfScientificName</2> |
|
| 147 |
</_join_words> |
|
| 148 |
</taxonomicname> |
|
| 127 | 149 |
</taxonlabel> |
| 128 |
</parent_id> |
|
| 129 |
<taxonomicname> |
|
| 130 |
<_join_words> |
|
| 131 |
<1> |
|
| 132 |
<_alt> |
|
| 133 |
<1>$ScientificName</1> |
|
| 134 |
<2> |
|
| 135 |
<_join_words> |
|
| 136 |
<1>$Family</1> |
|
| 137 |
<2>$Genus</2> |
|
| 138 |
<3>$SpecificEpithet</3> |
|
| 139 |
<5>$InfraspecificEpithet</5> |
|
| 140 |
</_join_words> |
|
| 141 |
</2> |
|
| 142 |
</_alt> |
|
| 143 |
</1> |
|
| 144 |
<2>$AuthorOfScientificName</2> |
|
| 145 |
</_join_words> |
|
| 146 |
</taxonomicname> |
|
| 147 |
<taxonverbatim> |
|
| 148 |
<author>$AuthorOfScientificName</author> |
|
| 149 |
<binomial>$ScientificName</binomial> |
|
| 150 |
<family>$Family</family> |
|
| 151 |
<genus>$Genus</genus> |
|
| 152 |
<species>$SpecificEpithet</species> |
|
| 153 |
</taxonverbatim> |
|
| 154 |
</taxonlabel> |
|
| 155 |
</taxonlabel_id> |
|
| 150 |
</taxonlabel_id> |
|
| 151 |
<author>$AuthorOfScientificName</author> |
|
| 152 |
<binomial>$ScientificName</binomial> |
|
| 153 |
<family>$Family</family> |
|
| 154 |
<genus>$Genus</genus> |
|
| 155 |
<species>$SpecificEpithet</species> |
|
| 156 |
</taxonverbatim> |
|
| 157 |
</taxonverbatim_id> |
|
| 156 | 158 |
</taxondetermination> |
| 157 | 159 |
<taxondetermination> |
| 158 | 160 |
<isoriginal>true</isoriginal> |
| 159 |
<taxonlabel_id>
|
|
| 160 |
<taxonlabel>
|
|
| 161 |
<matched_label_id>
|
|
| 161 |
<taxonverbatim_id>
|
|
| 162 |
<taxonverbatim>
|
|
| 163 |
<taxonlabel_id>
|
|
| 162 | 164 |
<taxonlabel> |
| 163 |
<creator_id>
|
|
| 164 |
<party>
|
|
| 165 |
<creator_id>0</creator_id>
|
|
| 166 |
<organizationname>TNRS</organizationname>
|
|
| 167 |
</party>
|
|
| 168 |
</creator_id>
|
|
| 169 |
<taxonomicname>
|
|
| 170 |
<_alt>
|
|
| 171 |
<1>$ScientificNameOriginal</1>
|
|
| 172 |
<2>
|
|
| 173 |
<_join_words>
|
|
| 174 |
<1>$GBIFFamilyOriginal</1>
|
|
| 175 |
<2>$GBIFGenusOriginal</2>
|
|
| 176 |
</_join_words>
|
|
| 177 |
</2> |
|
| 178 |
</_alt>
|
|
| 179 |
</taxonomicname>
|
|
| 180 |
</taxonlabel>
|
|
| 181 |
</matched_label_id>
|
|
| 182 |
<parent_id>
|
|
| 183 |
<taxonlabel>
|
|
| 165 |
<matched_label_id>
|
|
| 166 |
<taxonlabel>
|
|
| 167 |
<creator_id> |
|
| 168 |
<party>
|
|
| 169 |
<creator_id>0</creator_id>
|
|
| 170 |
<organizationname>TNRS</organizationname>
|
|
| 171 |
</party>
|
|
| 172 |
</creator_id>
|
|
| 173 |
<taxonomicname>
|
|
| 174 |
<_alt>
|
|
| 175 |
<1>$ScientificNameOriginal</1>
|
|
| 176 |
<2>
|
|
| 177 |
<_join_words>
|
|
| 178 |
<1>$GBIFFamilyOriginal</1>
|
|
| 179 |
<2>$GBIFGenusOriginal</2>
|
|
| 180 |
</_join_words>
|
|
| 181 |
</2>
|
|
| 182 |
</_alt>
|
|
| 183 |
</taxonomicname>
|
|
| 184 |
</taxonlabel>
|
|
| 185 |
</matched_label_id>
|
|
| 184 | 186 |
<parent_id> |
| 185 | 187 |
<taxonlabel> |
| 186 |
<rank>cultivar</rank> |
|
| 187 | 188 |
<parent_id> |
| 188 | 189 |
<taxonlabel> |
| 189 |
<rank>forma</rank>
|
|
| 190 |
<rank>cultivar</rank>
|
|
| 190 | 191 |
<parent_id> |
| 191 | 192 |
<taxonlabel> |
| 192 |
<rank>variety</rank>
|
|
| 193 |
<rank>forma</rank>
|
|
| 193 | 194 |
<parent_id> |
| 194 | 195 |
<taxonlabel> |
| 195 |
<rank>subspecies</rank>
|
|
| 196 |
<rank>variety</rank>
|
|
| 196 | 197 |
<parent_id> |
| 197 | 198 |
<taxonlabel> |
| 198 |
<rank>species</rank> |
|
| 199 |
<rank>subspecies</rank>
|
|
| 199 | 200 |
<parent_id> |
| 200 | 201 |
<taxonlabel> |
| 201 |
<rank>genus</rank> |
|
| 202 |
<taxonepithet>$GBIFGenusOriginal</taxonepithet> |
|
| 202 |
<rank>species</rank> |
|
| 203 | 203 |
<parent_id> |
| 204 | 204 |
<taxonlabel> |
| 205 |
<rank>family</rank> |
|
| 206 |
<taxonepithet>$GBIFFamilyOriginal</taxonepithet> |
|
| 205 |
<rank>genus</rank> |
|
| 206 |
<taxonepithet>$GBIFGenusOriginal</taxonepithet> |
|
| 207 |
<parent_id> |
|
| 208 |
<taxonlabel> |
|
| 209 |
<rank>family</rank> |
|
| 210 |
<taxonepithet>$GBIFFamilyOriginal</taxonepithet> |
|
| 211 |
</taxonlabel> |
|
| 212 |
</parent_id> |
|
| 207 | 213 |
</taxonlabel> |
| 208 | 214 |
</parent_id> |
| 209 | 215 |
</taxonlabel> |
| ... | ... | |
| 218 | 224 |
</parent_id> |
| 219 | 225 |
</taxonlabel> |
| 220 | 226 |
</parent_id> |
| 227 |
<taxonomicname> |
|
| 228 |
<_alt> |
|
| 229 |
<1>$ScientificNameOriginal</1> |
|
| 230 |
<2> |
|
| 231 |
<_join_words> |
|
| 232 |
<1>$GBIFFamilyOriginal</1> |
|
| 233 |
<2>$GBIFGenusOriginal</2> |
|
| 234 |
</_join_words> |
|
| 235 |
</2> |
|
| 236 |
</_alt> |
|
| 237 |
</taxonomicname> |
|
| 221 | 238 |
</taxonlabel> |
| 222 |
</parent_id> |
|
| 223 |
<taxonomicname> |
|
| 224 |
<_alt> |
|
| 225 |
<1>$ScientificNameOriginal</1> |
|
| 226 |
<2> |
|
| 227 |
<_join_words> |
|
| 228 |
<1>$GBIFFamilyOriginal</1> |
|
| 229 |
<2>$GBIFGenusOriginal</2> |
|
| 230 |
</_join_words> |
|
| 231 |
</2> |
|
| 232 |
</_alt> |
|
| 233 |
</taxonomicname> |
|
| 234 |
<taxonverbatim> |
|
| 235 |
<binomial>$ScientificNameOriginal</binomial> |
|
| 236 |
<family>$GBIFFamilyOriginal</family> |
|
| 237 |
<genus>$GBIFGenusOriginal</genus> |
|
| 238 |
</taxonverbatim> |
|
| 239 |
</taxonlabel> |
|
| 240 |
</taxonlabel_id> |
|
| 239 |
</taxonlabel_id> |
|
| 240 |
<binomial>$ScientificNameOriginal</binomial> |
|
| 241 |
<family>$GBIFFamilyOriginal</family> |
|
| 242 |
<genus>$GBIFGenusOriginal</genus> |
|
| 243 |
</taxonverbatim> |
|
| 244 |
</taxonverbatim_id> |
|
| 241 | 245 |
</taxondetermination> |
| 242 | 246 |
<verbatimcollectorname>$Collector</verbatimcollectorname> |
| 243 | 247 |
</taxonoccurrence> |
| inputs/MT/Specimen/VegBIEN.csv | ||
|---|---|---|
| 11 | 11 |
establishmentMeans,"/location/locationevent/taxonoccurrence/iscultivated/_alt/2/_map:[cultivated=t,wild=f,*=]/value", |
| 12 | 12 |
establishmentMeans,"/location/locationevent/taxonoccurrence/isnative/_map:[native=t,exotic=f,*=]/value", |
| 13 | 13 |
id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 16 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 17 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 18 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 19 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 20 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family,
|
|
| 21 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus,
|
|
| 14 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 15 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 16 |
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 17 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 18 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 19 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 20 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 21 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 22 | 22 |
locality,/location/locationnarrative/_merge/1, |
| 23 | 23 |
continent,/location/locationplace/*_id/placepath/continent, |
| 24 | 24 |
basisOfRecord,,** No join mapping for basisOfRecord ** |
| inputs/MT/Specimen/test.xml.ref | ||
|---|---|---|
| 40 | 40 |
</isnative> |
| 41 | 41 |
<sourceaccessioncode>$id</sourceaccessioncode> |
| 42 | 42 |
<taxondetermination> |
| 43 |
<taxonlabel_id>
|
|
| 44 |
<taxonlabel>
|
|
| 45 |
<matched_label_id>
|
|
| 43 |
<taxonverbatim_id>
|
|
| 44 |
<taxonverbatim>
|
|
| 45 |
<taxonlabel_id>
|
|
| 46 | 46 |
<taxonlabel> |
| 47 |
<creator_id>
|
|
| 48 |
<party>
|
|
| 49 |
<creator_id>0</creator_id>
|
|
| 50 |
<organizationname>TNRS</organizationname>
|
|
| 51 |
</party>
|
|
| 52 |
</creator_id>
|
|
| 53 |
<taxonomicname>
|
|
| 54 |
<_join_words>
|
|
| 55 |
<1>$family</1>
|
|
| 56 |
<2>$genus</2>
|
|
| 57 |
</_join_words>
|
|
| 58 |
</taxonomicname>
|
|
| 59 |
</taxonlabel>
|
|
| 60 |
</matched_label_id>
|
|
| 61 |
<parent_id>
|
|
| 62 |
<taxonlabel>
|
|
| 47 |
<matched_label_id>
|
|
| 48 |
<taxonlabel>
|
|
| 49 |
<creator_id> |
|
| 50 |
<party>
|
|
| 51 |
<creator_id>0</creator_id>
|
|
| 52 |
<organizationname>TNRS</organizationname>
|
|
| 53 |
</party>
|
|
| 54 |
</creator_id>
|
|
| 55 |
<taxonomicname>
|
|
| 56 |
<_join_words>
|
|
| 57 |
<1>$family</1>
|
|
| 58 |
<2>$genus</2>
|
|
| 59 |
</_join_words>
|
|
| 60 |
</taxonomicname>
|
|
| 61 |
</taxonlabel>
|
|
| 62 |
</matched_label_id>
|
|
| 63 | 63 |
<parent_id> |
| 64 | 64 |
<taxonlabel> |
| 65 |
<rank>cultivar</rank> |
|
| 66 | 65 |
<parent_id> |
| 67 | 66 |
<taxonlabel> |
| 68 |
<rank>forma</rank>
|
|
| 67 |
<rank>cultivar</rank>
|
|
| 69 | 68 |
<parent_id> |
| 70 | 69 |
<taxonlabel> |
| 71 |
<rank>variety</rank>
|
|
| 70 |
<rank>forma</rank>
|
|
| 72 | 71 |
<parent_id> |
| 73 | 72 |
<taxonlabel> |
| 74 |
<rank>subspecies</rank>
|
|
| 73 |
<rank>variety</rank>
|
|
| 75 | 74 |
<parent_id> |
| 76 | 75 |
<taxonlabel> |
| 77 |
<rank>species</rank> |
|
| 76 |
<rank>subspecies</rank>
|
|
| 78 | 77 |
<parent_id> |
| 79 | 78 |
<taxonlabel> |
| 80 |
<rank>genus</rank> |
|
| 81 |
<taxonepithet>$genus</taxonepithet> |
|
| 79 |
<rank>species</rank> |
|
| 82 | 80 |
<parent_id> |
| 83 | 81 |
<taxonlabel> |
| 84 |
<rank>family</rank> |
|
| 85 |
<taxonepithet>$family</taxonepithet> |
|
| 82 |
<rank>genus</rank> |
|
| 83 |
<taxonepithet>$genus</taxonepithet> |
|
| 84 |
<parent_id> |
|
| 85 |
<taxonlabel> |
|
| 86 |
<rank>family</rank> |
|
| 87 |
<taxonepithet>$family</taxonepithet> |
|
| 88 |
</taxonlabel> |
|
| 89 |
</parent_id> |
|
| 86 | 90 |
</taxonlabel> |
| 87 | 91 |
</parent_id> |
| 88 | 92 |
</taxonlabel> |
| ... | ... | |
| 97 | 101 |
</parent_id> |
| 98 | 102 |
</taxonlabel> |
| 99 | 103 |
</parent_id> |
| 104 |
<taxonomicname> |
|
| 105 |
<_join_words> |
|
| 106 |
<1>$family</1> |
|
| 107 |
<2>$genus</2> |
|
| 108 |
</_join_words> |
|
| 109 |
</taxonomicname> |
|
| 100 | 110 |
</taxonlabel> |
| 101 |
</parent_id> |
|
| 102 |
<taxonomicname> |
|
| 103 |
<_join_words> |
|
| 104 |
<1>$family</1> |
|
| 105 |
<2>$genus</2> |
|
| 106 |
</_join_words> |
|
| 107 |
</taxonomicname> |
|
| 108 |
<taxonverbatim> |
|
| 109 |
<family>$family</family> |
|
| 110 |
<genus>$genus</genus> |
|
| 111 |
</taxonverbatim> |
|
| 112 |
</taxonlabel> |
|
| 113 |
</taxonlabel_id> |
|
| 111 |
</taxonlabel_id> |
|
| 112 |
<family>$family</family> |
|
| 113 |
<genus>$genus</genus> |
|
| 114 |
</taxonverbatim> |
|
| 115 |
</taxonverbatim_id> |
|
| 114 | 116 |
</taxondetermination> |
| 115 | 117 |
</taxonoccurrence> |
| 116 | 118 |
</locationevent> |
| inputs/test_taxonomic_names/Taxon/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
test_taxonomic_names,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 4 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/sourceaccessioncode, |
|
| 5 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 6 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial, |
|
| 3 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 4 |
scientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
|
| 5 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 6 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
|
| inputs/test_taxonomic_names/Taxon/test.xml.ref | ||
|---|---|---|
| 7 | 7 |
<locationevent> |
| 8 | 8 |
<taxonoccurrence> |
| 9 | 9 |
<taxondetermination> |
| 10 |
<taxonlabel_id>
|
|
| 11 |
<taxonlabel>
|
|
| 12 |
<matched_label_id>
|
|
| 10 |
<taxonverbatim_id>
|
|
| 11 |
<taxonverbatim>
|
|
| 12 |
<taxonlabel_id>
|
|
| 13 | 13 |
<taxonlabel> |
| 14 |
<creator_id> |
|
| 15 |
<party> |
|
| 16 |
<creator_id>0</creator_id> |
|
| 17 |
<organizationname>TNRS</organizationname> |
|
| 18 |
</party> |
|
| 19 |
</creator_id> |
|
| 14 |
<matched_label_id> |
|
| 15 |
<taxonlabel> |
|
| 16 |
<creator_id> |
|
| 17 |
<party> |
|
| 18 |
<creator_id>0</creator_id> |
|
| 19 |
<organizationname>TNRS</organizationname> |
|
| 20 |
</party> |
|
| 21 |
</creator_id> |
|
| 22 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 23 |
</taxonlabel> |
|
| 24 |
</matched_label_id> |
|
| 25 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
|
| 20 | 26 |
<taxonomicname>$scientificName</taxonomicname> |
| 21 | 27 |
</taxonlabel> |
| 22 |
</matched_label_id> |
|
| 23 |
<sourceaccessioncode>$scientificNameID</sourceaccessioncode> |
|
| 24 |
<taxonomicname>$scientificName</taxonomicname> |
|
| 25 |
<taxonverbatim><binomial>$scientificName</binomial></taxonverbatim> |
|
| 26 |
</taxonlabel> |
|
| 27 |
</taxonlabel_id> |
|
| 28 |
</taxonlabel_id> |
|
| 29 |
<binomial>$scientificName</binomial> |
|
| 30 |
</taxonverbatim> |
|
| 31 |
</taxonverbatim_id> |
|
| 28 | 32 |
</taxondetermination> |
| 29 | 33 |
</taxonoccurrence> |
| 30 | 34 |
</locationevent> |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 21 | 21 |
darwin:CollectorNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1", |
| 22 | 22 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 23 | 23 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 24 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 25 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 26 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 27 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 28 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4", |
|
| 29 |
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 30 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 31 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 32 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 33 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
|
| 34 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
|
| 35 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 36 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 37 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 38 |
darwin:Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet", |
|
| 39 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
|
| 40 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet", |
|
| 41 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
|
| 42 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 43 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 44 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 45 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 46 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 47 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 48 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author,
|
|
| 49 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial,
|
|
| 50 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family,
|
|
| 51 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus,
|
|
| 52 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species,
|
|
| 24 |
darwin:ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 25 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 26 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 27 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 28 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 29 |
darwin:ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2",
|
|
| 30 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 31 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 32 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 33 |
darwin:IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 34 |
darwin:Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 35 |
darwin:Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 36 |
darwin:Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 37 |
darwin:Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 38 |
darwin:Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
|
| 39 |
darwin:Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
|
| 40 |
darwin:Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
|
| 41 |
darwin:Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
|
| 42 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 43 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 44 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 45 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
| 46 |
darwin:Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 47 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2,
|
|
| 48 |
darwin:ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
| 49 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
|
| 50 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 51 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 52 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species, |
|
| 53 | 53 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 54 | 54 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 55 | 55 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 26 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 27 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 28 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 29 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 30 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family,
|
|
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus,
|
|
| 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species,
|
|
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 26 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 27 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 28 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 29 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 30 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
| 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species, |
|
| 35 | 35 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 36 | 36 |
Comments,,** No join mapping for *Comments ** |
| 37 | 37 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 42 | 42 |
<authortaxoncode>$Tree Number</authortaxoncode> |
| 43 | 43 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
| 44 | 44 |
<taxondetermination> |
| 45 |
<taxonlabel_id>
|
|
| 46 |
<taxonlabel>
|
|
| 47 |
<matched_label_id>
|
|
| 45 |
<taxonverbatim_id>
|
|
| 46 |
<taxonverbatim>
|
|
| 47 |
<taxonlabel_id>
|
|
| 48 | 48 |
<taxonlabel> |
| 49 |
<creator_id>
|
|
| 50 |
<party>
|
|
| 51 |
<creator_id>0</creator_id>
|
|
| 52 |
<organizationname>TNRS</organizationname>
|
|
| 53 |
</party>
|
|
| 54 |
</creator_id>
|
|
| 55 |
<taxonomicname>
|
|
| 56 |
<_join_words>
|
|
| 57 |
<1>$Family</1>
|
|
| 58 |
<2>$Genus</2>
|
|
| 59 |
<3>$Species</3>
|
|
| 60 |
</_join_words>
|
|
| 61 |
</taxonomicname>
|
|
| 62 |
</taxonlabel>
|
|
| 63 |
</matched_label_id>
|
|
| 64 |
<parent_id>
|
|
| 65 |
<taxonlabel>
|
|
| 49 |
<matched_label_id>
|
|
| 50 |
<taxonlabel>
|
|
| 51 |
<creator_id> |
|
| 52 |
<party>
|
|
| 53 |
<creator_id>0</creator_id>
|
|
| 54 |
<organizationname>TNRS</organizationname>
|
|
| 55 |
</party>
|
|
| 56 |
</creator_id>
|
|
| 57 |
<taxonomicname>
|
|
| 58 |
<_join_words>
|
|
| 59 |
<1>$Family</1>
|
|
| 60 |
<2>$Genus</2>
|
|
| 61 |
<3>$Species</3>
|
|
| 62 |
</_join_words>
|
|
| 63 |
</taxonomicname>
|
|
| 64 |
</taxonlabel>
|
|
| 65 |
</matched_label_id>
|
|
| 66 | 66 |
<parent_id> |
| 67 | 67 |
<taxonlabel> |
| 68 |
<rank>cultivar</rank> |
|
| 69 | 68 |
<parent_id> |
| 70 | 69 |
<taxonlabel> |
| 71 |
<rank>forma</rank>
|
|
| 70 |
<rank>cultivar</rank>
|
|
| 72 | 71 |
<parent_id> |
| 73 | 72 |
<taxonlabel> |
| 74 |
<rank>variety</rank>
|
|
| 73 |
<rank>forma</rank>
|
|
| 75 | 74 |
<parent_id> |
| 76 | 75 |
<taxonlabel> |
| 77 |
<rank>subspecies</rank>
|
|
| 76 |
<rank>variety</rank>
|
|
| 78 | 77 |
<parent_id> |
| 79 | 78 |
<taxonlabel> |
| 80 |
<rank>species</rank> |
|
| 81 |
<taxonepithet>$Species</taxonepithet> |
|
| 79 |
<rank>subspecies</rank> |
|
| 82 | 80 |
<parent_id> |
| 83 | 81 |
<taxonlabel> |
| 84 |
<rank>genus</rank>
|
|
| 85 |
<taxonepithet>$Genus</taxonepithet>
|
|
| 82 |
<rank>species</rank>
|
|
| 83 |
<taxonepithet>$Species</taxonepithet>
|
|
| 86 | 84 |
<parent_id> |
| 87 | 85 |
<taxonlabel> |
| 88 |
<rank>family</rank> |
|
| 89 |
<taxonepithet>$Family</taxonepithet> |
|
| 86 |
<rank>genus</rank> |
|
| 87 |
<taxonepithet>$Genus</taxonepithet> |
|
| 88 |
<parent_id> |
|
| 89 |
<taxonlabel> |
|
| 90 |
<rank>family</rank> |
|
| 91 |
<taxonepithet>$Family</taxonepithet> |
|
| 92 |
</taxonlabel> |
|
| 93 |
</parent_id> |
|
| 90 | 94 |
</taxonlabel> |
| 91 | 95 |
</parent_id> |
| 92 | 96 |
</taxonlabel> |
| ... | ... | |
| 101 | 105 |
</parent_id> |
| 102 | 106 |
</taxonlabel> |
| 103 | 107 |
</parent_id> |
| 108 |
<taxonomicname> |
|
| 109 |
<_join_words> |
|
| 110 |
<1>$Family</1> |
|
| 111 |
<2>$Genus</2> |
|
| 112 |
<3>$Species</3> |
|
| 113 |
</_join_words> |
|
| 114 |
</taxonomicname> |
|
| 104 | 115 |
</taxonlabel> |
| 105 |
</parent_id> |
|
| 106 |
<taxonomicname> |
|
| 107 |
<_join_words> |
|
| 108 |
<1>$Family</1> |
|
| 109 |
<2>$Genus</2> |
|
| 110 |
<3>$Species</3> |
|
| 111 |
</_join_words> |
|
| 112 |
</taxonomicname> |
|
| 113 |
<taxonverbatim> |
|
| 114 |
<family>$Family</family> |
|
| 115 |
<genus>$Genus</genus> |
|
| 116 |
<species>$Species</species> |
|
| 117 |
</taxonverbatim> |
|
| 118 |
</taxonlabel> |
|
| 119 |
</taxonlabel_id> |
|
| 116 |
</taxonlabel_id> |
|
| 117 |
<family>$Family</family> |
|
| 118 |
<genus>$Genus</genus> |
|
| 119 |
<species>$Species</species> |
|
| 120 |
</taxonverbatim> |
|
| 121 |
</taxonverbatim_id> |
|
| 120 | 122 |
</taxondetermination> |
| 121 | 123 |
<verbatimcollectorname>$Names of Collectors</verbatimcollectorname> |
| 122 | 124 |
</taxonoccurrence> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 20 | 20 |
1ha Plot Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
Tree Number,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
| 22 | 22 |
Id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 26 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 27 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 28 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 29 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 30 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family,
|
|
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus,
|
|
| 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species,
|
|
| 23 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 24 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 25 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 26 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 27 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 28 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 29 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 30 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 31 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
| 32 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species, |
|
| 35 | 35 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 36 | 36 |
Comments,,** No join mapping for *Comments ** |
| 37 | 37 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 42 | 42 |
<authortaxoncode>$Tree Number</authortaxoncode> |
| 43 | 43 |
<sourceaccessioncode>$Id</sourceaccessioncode> |
| 44 | 44 |
<taxondetermination> |
| 45 |
<taxonlabel_id>
|
|
| 46 |
<taxonlabel>
|
|
| 47 |
<matched_label_id>
|
|
| 45 |
<taxonverbatim_id>
|
|
| 46 |
<taxonverbatim>
|
|
| 47 |
<taxonlabel_id>
|
|
| 48 | 48 |
<taxonlabel> |
| 49 |
<creator_id>
|
|
| 50 |
<party>
|
|
| 51 |
<creator_id>0</creator_id>
|
|
| 52 |
<organizationname>TNRS</organizationname>
|
|
| 53 |
</party>
|
|
| 54 |
</creator_id>
|
|
| 55 |
<taxonomicname>
|
|
| 56 |
<_join_words>
|
|
| 57 |
<1>$Family</1>
|
|
| 58 |
<2>$Genus</2>
|
|
| 59 |
<3>$Species</3>
|
|
| 60 |
</_join_words>
|
|
| 61 |
</taxonomicname>
|
|
| 62 |
</taxonlabel>
|
|
| 63 |
</matched_label_id>
|
|
| 64 |
<parent_id>
|
|
| 65 |
<taxonlabel>
|
|
| 49 |
<matched_label_id>
|
|
| 50 |
<taxonlabel>
|
|
| 51 |
<creator_id> |
|
| 52 |
<party>
|
|
| 53 |
<creator_id>0</creator_id>
|
|
| 54 |
<organizationname>TNRS</organizationname>
|
|
| 55 |
</party>
|
|
| 56 |
</creator_id>
|
|
| 57 |
<taxonomicname>
|
|
| 58 |
<_join_words>
|
|
| 59 |
<1>$Family</1>
|
|
| 60 |
<2>$Genus</2>
|
|
| 61 |
<3>$Species</3>
|
|
| 62 |
</_join_words>
|
|
| 63 |
</taxonomicname>
|
|
| 64 |
</taxonlabel>
|
|
| 65 |
</matched_label_id>
|
|
| 66 | 66 |
<parent_id> |
| 67 | 67 |
<taxonlabel> |
| 68 |
<rank>cultivar</rank> |
|
| 69 | 68 |
<parent_id> |
| 70 | 69 |
<taxonlabel> |
| 71 |
<rank>forma</rank>
|
|
| 70 |
<rank>cultivar</rank>
|
|
| 72 | 71 |
<parent_id> |
| 73 | 72 |
<taxonlabel> |
| 74 |
<rank>variety</rank>
|
|
| 73 |
<rank>forma</rank>
|
|
| 75 | 74 |
<parent_id> |
| 76 | 75 |
<taxonlabel> |
| 77 |
<rank>subspecies</rank>
|
|
| 76 |
<rank>variety</rank>
|
|
| 78 | 77 |
<parent_id> |
| 79 | 78 |
<taxonlabel> |
| 80 |
<rank>species</rank> |
|
| 81 |
<taxonepithet>$Species</taxonepithet> |
|
| 79 |
<rank>subspecies</rank> |
|
| 82 | 80 |
<parent_id> |
| 83 | 81 |
<taxonlabel> |
| 84 |
<rank>genus</rank>
|
|
| 85 |
<taxonepithet>$Genus</taxonepithet>
|
|
| 82 |
<rank>species</rank>
|
|
| 83 |
<taxonepithet>$Species</taxonepithet>
|
|
| 86 | 84 |
<parent_id> |
| 87 | 85 |
<taxonlabel> |
| 88 |
<rank>family</rank> |
|
| 89 |
<taxonepithet>$Family</taxonepithet> |
|
| 86 |
<rank>genus</rank> |
|
| 87 |
<taxonepithet>$Genus</taxonepithet> |
|
| 88 |
<parent_id> |
|
| 89 |
<taxonlabel> |
|
| 90 |
<rank>family</rank> |
|
| 91 |
<taxonepithet>$Family</taxonepithet> |
|
| 92 |
</taxonlabel> |
|
| 93 |
</parent_id> |
|
| 90 | 94 |
</taxonlabel> |
| 91 | 95 |
</parent_id> |
| 92 | 96 |
</taxonlabel> |
| ... | ... | |
| 101 | 105 |
</parent_id> |
| 102 | 106 |
</taxonlabel> |
| 103 | 107 |
</parent_id> |
| 108 |
<taxonomicname> |
|
| 109 |
<_join_words> |
|
| 110 |
<1>$Family</1> |
|
| 111 |
<2>$Genus</2> |
|
| 112 |
<3>$Species</3> |
|
| 113 |
</_join_words> |
|
| 114 |
</taxonomicname> |
|
| 104 | 115 |
</taxonlabel> |
| 105 |
</parent_id> |
|
| 106 |
<taxonomicname> |
|
| 107 |
<_join_words> |
|
| 108 |
<1>$Family</1> |
|
| 109 |
<2>$Genus</2> |
|
| 110 |
<3>$Species</3> |
|
| 111 |
</_join_words> |
|
| 112 |
</taxonomicname> |
|
| 113 |
<taxonverbatim> |
|
| 114 |
<family>$Family</family> |
|
| 115 |
<genus>$Genus</genus> |
|
| 116 |
<species>$Species</species> |
|
| 117 |
</taxonverbatim> |
|
| 118 |
</taxonlabel> |
|
| 119 |
</taxonlabel_id> |
|
| 116 |
</taxonlabel_id> |
|
| 117 |
<family>$Family</family> |
|
| 118 |
<genus>$Genus</genus> |
|
| 119 |
<species>$Species</species> |
|
| 120 |
</taxonverbatim> |
|
| 121 |
</taxonverbatim_id> |
|
| 120 | 122 |
</taxondetermination> |
| 121 | 123 |
<verbatimcollectorname>$Names of Collectors</verbatimcollectorname> |
| 122 | 124 |
</taxonoccurrence> |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 26 | 26 |
ScientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/3", |
| 27 | 27 |
UniqueNYInternalRecordNumber,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 28 | 28 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 29 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1", |
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1", |
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2", |
|
| 32 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
|
| 33 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4", |
|
| 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2", |
|
| 35 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
|
| 36 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
|
| 37 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
|
| 38 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2, |
|
| 39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
|
| 40 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
|
| 41 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
|
| 42 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
|
| 43 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet", |
|
| 44 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
|
| 45 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet", |
|
| 46 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet", |
|
| 47 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
|
| 48 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
|
| 49 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
|
| 50 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
|
| 51 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
|
| 52 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
|
| 53 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/author,
|
|
| 54 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/binomial,
|
|
| 55 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/family,
|
|
| 56 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/genus,
|
|
| 57 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonlabel/taxonverbatim/species,
|
|
| 29 |
ScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1",
|
|
| 30 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1",
|
|
| 31 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2",
|
|
| 32 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
|
|
| 33 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4",
|
|
| 34 |
ScientificNameAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2",
|
|
| 35 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value",
|
|
| 36 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value",
|
|
| 37 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value",
|
|
| 38 |
IdentifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creator_id/_simplifyPath:[next=creator_id]/path/party/fullname/_alt/2,
|
|
| 39 |
Subspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
|
|
| 40 |
Species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
|
| 41 |
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
|
| 42 |
Family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
|
| 43 |
Order,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet",
|
|
| 44 |
Class,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet",
|
|
| 45 |
Phylum,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=phylum]/taxonepithet",
|
|
| 46 |
Kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
|
|
| 47 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1,
|
|
| 48 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,
|
|
| 49 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
|
| 50 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
|
| 51 |
Subspecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4,
|
|
| 52 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2,
|
|
| 53 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
|
| 54 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
|
| 55 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
|
| 56 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
|
| 57 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species, |
|
| 58 | 58 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 59 | 59 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 60 | 60 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 107 | 107 |
<sourceaccessioncode>$UniqueNYInternalRecordNumber</sourceaccessioncode> |
| 108 | 108 |
<taxondetermination> |
| 109 | 109 |
<party_id><party><fullname>$IdentifiedBy</fullname></party></party_id> |
| 110 |
<taxonlabel_id>
|
|
| 111 |
<taxonlabel>
|
|
| 112 |
<matched_label_id>
|
|
| 110 |
<taxonverbatim_id>
|
|
| 111 |
<taxonverbatim>
|
|
| 112 |
<taxonlabel_id>
|
|
| 113 | 113 |
<taxonlabel> |
| 114 |
<matched_label_id> |
|
| 115 |
<taxonlabel> |
|
| 116 |
<creator_id> |
|
| 117 |
<party> |
|
| 118 |
<creator_id>0</creator_id> |
|
| 119 |
<organizationname>TNRS</organizationname> |
|
| 120 |
</party> |
|
| 121 |
</creator_id> |
|
| 122 |
<taxonomicname> |
|
| 123 |
<_join_words> |
|
| 124 |
<1> |
|
| 125 |
<_alt> |
|
| 126 |
<1>$ScientificName</1> |
|
| 127 |
<2> |
|
| 128 |
<_join_words> |
|
| 129 |
<1>$Family</1> |
|
| 130 |
<2>$Genus</2> |
|
| 131 |
<3>$Species</3> |
|
| 132 |
<4>$Subspecies</4> |
|
| 133 |
</_join_words> |
|
| 134 |
</2> |
|
| 135 |
</_alt> |
|
| 136 |
</1> |
|
| 137 |
<2>$ScientificNameAuthor</2> |
|
| 138 |
</_join_words> |
|
| 139 |
</taxonomicname> |
|
| 140 |
</taxonlabel> |
|
| 141 |
</matched_label_id> |
|
| 142 |
<creationdate> |
|
| 143 |
<_date> |
|
| 144 |
<day> |
|
| 145 |
<_nullIf> |
|
| 146 |
<null>0</null> |
|
| 147 |
<type>float</type> |
|
| 148 |
<value>$DayIdentified</value> |
|
| 149 |
</_nullIf> |
|
| 150 |
</day> |
|
| 151 |
<month> |
|
| 152 |
<_nullIf> |
|
| 153 |
<null>0</null> |
|
| 154 |
<type>float</type> |
|
| 155 |
<value>$MonthIdentified</value> |
|
| 156 |
</_nullIf> |
|
| 157 |
</month> |
|
| 158 |
<year> |
|
| 159 |
<_nullIf> |
|
| 160 |
<null>0</null> |
|
| 161 |
<type>float</type> |
|
| 162 |
<value>$YearIdentified</value> |
|
| 163 |
</_nullIf> |
|
| 164 |
</year> |
|
| 165 |
</_date> |
|
| 166 |
</creationdate> |
|
| 114 | 167 |
<creator_id> |
| 115 |
<party>
|
|
| 116 |
<creator_id>0</creator_id>
|
|
| 117 |
<organizationname>TNRS</organizationname>
|
|
| 118 |
</party>
|
|
| 168 |
<_simplifyPath>
|
|
| 169 |
<next>creator_id</next>
|
|
| 170 |
<path><party><fullname>$IdentifiedBy</fullname></party></path>
|
|
| 171 |
</_simplifyPath>
|
|
| 119 | 172 |
</creator_id> |
| 120 |
<taxonomicname> |
|
| 121 |
<_join_words> |
|
| 122 |
<1> |
|
| 123 |
<_alt> |
|
| 124 |
<1>$ScientificName</1> |
|
| 125 |
<2> |
|
| 126 |
<_join_words> |
|
| 127 |
<1>$Family</1> |
|
| 128 |
<2>$Genus</2> |
|
| 129 |
<3>$Species</3> |
|
| 130 |
<4>$Subspecies</4> |
|
| 131 |
</_join_words> |
|
| 132 |
</2> |
|
| 133 |
</_alt> |
|
| 134 |
</1> |
|
| 135 |
<2>$ScientificNameAuthor</2> |
|
| 136 |
</_join_words> |
|
| 137 |
</taxonomicname> |
|
| 138 |
</taxonlabel> |
|
| 139 |
</matched_label_id> |
|
| 140 |
<creationdate> |
|
| 141 |
<_date> |
|
| 142 |
<day> |
|
| 143 |
<_nullIf> |
|
| 144 |
<null>0</null> |
|
| 145 |
<type>float</type> |
|
| 146 |
<value>$DayIdentified</value> |
|
| 147 |
</_nullIf> |
|
| 148 |
</day> |
|
| 149 |
<month> |
|
| 150 |
<_nullIf> |
|
| 151 |
<null>0</null> |
|
| 152 |
<type>float</type> |
|
| 153 |
<value>$MonthIdentified</value> |
|
| 154 |
</_nullIf> |
|
| 155 |
</month> |
|
| 156 |
<year> |
|
| 157 |
<_nullIf> |
|
| 158 |
<null>0</null> |
|
| 159 |
<type>float</type> |
|
| 160 |
<value>$YearIdentified</value> |
|
| 161 |
</_nullIf> |
|
| 162 |
</year> |
|
| 163 |
</_date> |
|
| 164 |
</creationdate> |
|
| 165 |
<creator_id> |
|
| 166 |
<_simplifyPath> |
|
| 167 |
<next>creator_id</next> |
|
| 168 |
<path><party><fullname>$IdentifiedBy</fullname></party></path> |
|
| 169 |
</_simplifyPath> |
|
| 170 |
</creator_id> |
|
| 171 |
<parent_id> |
|
| 172 |
<taxonlabel> |
|
| 173 | 173 |
<parent_id> |
| 174 | 174 |
<taxonlabel> |
| 175 |
<rank>cultivar</rank> |
|
Also available in: Unified diff
schemas/vegbien.sql: Link taxondetermination to taxonverbatim (which is a subclass of taxonlabel) instead of directly to taxonlabel. This will enable later having multiple taxonverbatims for one taxonlabel.