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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5672 over 12 years Aaron Marcuse-Kubitza pg_dump_vegbien: Added opts env var to allow sp...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5681 over 12 years Aaron Marcuse-Kubitza inputs/test_taxonomic_names/test_scrub: Remove ...
  lib 5683 over 12 years Aaron Marcuse-Kubitza sql.py: parse_exception(): DoesNotExistExceptio...
  mappings 5677 over 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: Removed filter pr...
  schemas 5685 over 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Added _is_higher_taxon()
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.87 KB 5679 over 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: Schemas: schemas/rot...
README.TXT 13 KB 5684 over 12 years Aaron Marcuse-Kubitza README.TXT: Documentation: To import and scrub ...
map 989 Bytes 5158 over 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5685 10/19/2012 05:57 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Added _is_higher_taxon()

5684 10/19/2012 05:52 PM Aaron Marcuse-Kubitza

README.TXT: Documentation: To import and scrub just the test taxonomic names: Added `make inputs/.TNRS/cleanup` after `make backups/TNRS.backup/restore` because the PostgreSQL collation may differ between vegbiendev's and the user's DB

5683 10/19/2012 05:50 PM Aaron Marcuse-Kubitza

sql.py: parse_exception(): DoesNotExistException: If item not found was a function and not found only because of a missing cast, raise MissingCastException instead. This should allow automatic casts to be added on function parameters as well as table columns.

5682 10/19/2012 05:28 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_db_view: Fixed bug where needed to join to taxonverbatim on taxonverbatim_id (the pkey) instead of taxonlabel_id, which used to be the pkey but is now an fkey

5681 10/19/2012 05:22 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/test_scrub: Remove any previous version of public.test_taxonomic_names before renaming public to it

5680 10/19/2012 05:19 PM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/test_scrub: Fixed bug where public.sql export did not include the "CREATE SCHEMA public" statement, because pg_dump doesn't add it to backups, by using new schemas/rename/% make target to first rename the public schema and then exporting it

5679 10/19/2012 05:12 PM Aaron Marcuse-Kubitza

root Makefile: VegBIEN DB: Schemas: schemas/rotate: Use new schemas/rename/%

5678 10/19/2012 05:12 PM Aaron Marcuse-Kubitza

root Makefile: VegBIEN DB: Schemas: Added schemas/rename/% to rename the public schema

5677 10/19/2012 04:54 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Removed filter preventing taxonomicStatus from being placed in taxonlabel if a morphospecies was provided, because the morphospecies actually never goes in the matched taxonlabel, only the verbatim taxonlabel

5676 10/19/2012 04:50 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: morphospecies: Also place it in the verbatim (input name's) taxonlabel. Note that it does not go in the matched name's taxonlabel, because that contains only fields from the matched name. The verbatim taxonlabel is thus a synonym of the matched taxonlabel where there is no morphospecies, or a child of it if there is a morphospecies.

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