Revision 569
Added by Aaron Marcuse-Kubitza about 13 years ago
test/accepted_output/SALVIAS_db.organisms.VegX.xml | ||
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101 | 101 |
<taxonConceptID>2</taxonConceptID> |
102 | 102 |
</assertion> |
103 | 103 |
</taxonRelationshipAssertion> |
104 |
<taxonRelationshipAssertion> |
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<assertion> |
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<taxonConceptID>3</taxonConceptID> |
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</assertion> |
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</taxonRelationshipAssertion> |
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104 | 109 |
</taxonRelationshipAssertions> |
105 | 110 |
</taxonDetermination> |
106 | 111 |
<taxonDetermination> |
... | ... | |
111 | 116 |
<taxonRelationshipAssertions> |
112 | 117 |
<taxonRelationshipAssertion> |
113 | 118 |
<assertion> |
114 |
<taxonConceptID>3</taxonConceptID>
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|
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<taxonConceptID>4</taxonConceptID>
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115 | 120 |
</assertion> |
116 | 121 |
</taxonRelationshipAssertion> |
117 | 122 |
<taxonRelationshipAssertion> |
118 | 123 |
<assertion> |
119 |
<taxonConceptID>4</taxonConceptID>
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<taxonConceptID>5</taxonConceptID>
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120 | 125 |
</assertion> |
121 | 126 |
</taxonRelationshipAssertion> |
122 | 127 |
</taxonRelationshipAssertions> |
... | ... | |
136 | 141 |
<taxonRelationshipAssertions> |
137 | 142 |
<taxonRelationshipAssertion> |
138 | 143 |
<assertion> |
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<taxonConceptID>5</taxonConceptID>
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<taxonConceptID>6</taxonConceptID>
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140 | 145 |
</assertion> |
141 | 146 |
</taxonRelationshipAssertion> |
142 | 147 |
<taxonRelationshipAssertion> |
143 | 148 |
<assertion> |
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<taxonConceptID>6</taxonConceptID>
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<taxonConceptID>7</taxonConceptID>
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145 | 150 |
</assertion> |
146 | 151 |
</taxonRelationshipAssertion> |
147 | 152 |
<taxonRelationshipAssertion> |
148 | 153 |
<assertion> |
149 |
<taxonConceptID>7</taxonConceptID>
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<taxonConceptID>8</taxonConceptID>
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150 | 155 |
</assertion> |
151 | 156 |
</taxonRelationshipAssertion> |
157 |
<taxonRelationshipAssertion> |
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<assertion> |
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<taxonConceptID>9</taxonConceptID> |
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</assertion> |
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</taxonRelationshipAssertion> |
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152 | 162 |
</taxonRelationshipAssertions> |
153 | 163 |
</taxonDetermination> |
154 | 164 |
<taxonDetermination> |
... | ... | |
159 | 169 |
<taxonRelationshipAssertions> |
160 | 170 |
<taxonRelationshipAssertion> |
161 | 171 |
<assertion> |
162 |
<taxonConceptID>8</taxonConceptID>
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<taxonConceptID>10</taxonConceptID>
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163 | 173 |
</assertion> |
164 | 174 |
</taxonRelationshipAssertion> |
165 | 175 |
<taxonRelationshipAssertion> |
166 | 176 |
<assertion> |
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<taxonConceptID>9</taxonConceptID>
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<taxonConceptID>11</taxonConceptID>
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168 | 178 |
</assertion> |
169 | 179 |
</taxonRelationshipAssertion> |
170 | 180 |
</taxonRelationshipAssertions> |
... | ... | |
182 | 192 |
<taxonConcept id="2"> |
183 | 193 |
<Rank code="sp"/> |
184 | 194 |
<Name>seleri</Name> |
185 |
<AccordingTo> |
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<Simple>Burret</Simple> |
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</AccordingTo> |
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188 | 195 |
</taxonConcept> |
189 | 196 |
<taxonConcept id="3"> |
197 |
<Rank code="auth"/> |
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<Name>Burret</Name> |
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</taxonConcept> |
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<taxonConcept id="4"> |
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190 | 201 |
<Rank code="fam"/> |
191 | 202 |
<Name>Arecaceae</Name> |
192 | 203 |
</taxonConcept> |
193 |
<taxonConcept id="4">
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<taxonConcept id="5">
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194 | 205 |
<Rank code="sp"/> |
195 | 206 |
<Name>seleri</Name> |
196 | 207 |
</taxonConcept> |
197 |
<taxonConcept id="5">
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208 |
<taxonConcept id="6">
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198 | 209 |
<Rank code="fam"/> |
199 | 210 |
<Name>Clusiaceae</Name> |
200 | 211 |
</taxonConcept> |
201 |
<taxonConcept id="6">
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<taxonConcept id="7">
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202 | 213 |
<Rank code="gen"/> |
203 | 214 |
<Name>Tovomitopsis</Name> |
204 | 215 |
</taxonConcept> |
205 |
<taxonConcept id="7">
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216 |
<taxonConcept id="8">
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206 | 217 |
<Rank code="sp"/> |
207 | 218 |
<Name>allenii</Name> |
208 |
<AccordingTo> |
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<Simple>Maguire</Simple> |
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210 |
</AccordingTo> |
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211 | 219 |
</taxonConcept> |
212 |
<taxonConcept id="8"> |
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220 |
<taxonConcept id="9"> |
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<Rank code="auth"/> |
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<Name>Maguire</Name> |
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</taxonConcept> |
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224 |
<taxonConcept id="10"> |
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213 | 225 |
<Rank code="fam"/> |
214 | 226 |
<Name>Clusiaceae</Name> |
215 | 227 |
</taxonConcept> |
216 |
<taxonConcept id="9">
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<taxonConcept id="11">
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217 | 229 |
<Rank code="sp"/> |
218 | 230 |
<Name>allenii</Name> |
219 | 231 |
</taxonConcept> |
test/accepted_output/SALVIAS_db.organisms.VegBIEN.xml | ||
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94 | 94 |
<plantconcept_id> |
95 | 95 |
<plantconcept> |
96 | 96 |
<plantstatus> |
97 |
<plantlevel>Authority</plantlevel> |
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<plantconceptstatus>accepted</plantconceptstatus> |
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<startdate>epoch</startdate> |
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<party_id> |
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<party/> |
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</party_id> |
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</plantstatus> |
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<reference_id> |
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<reference/> |
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</reference_id> |
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<plantname_id> |
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<plantname> |
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<plantname>Burret</plantname> |
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</plantname> |
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</plantname_id> |
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</plantconcept> |
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113 |
</plantconcept_id> |
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<determinationtype>Computer (automated)</determinationtype> |
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<originaldetermination>false</originaldetermination> |
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<currentdetermination>true</currentdetermination> |
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117 |
<determinationdate>epoch</determinationdate> |
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118 |
<party_id> |
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119 |
<party/> |
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</party_id> |
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</taxondetermination> |
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122 |
<taxondetermination> |
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<role_id> |
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124 |
<aux_role> |
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<rolecode>computer</rolecode> |
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126 |
</aux_role> |
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127 |
</role_id> |
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128 |
<plantconcept_id> |
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129 |
<plantconcept> |
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<plantstatus> |
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97 | 131 |
<plantlevel>Family</plantlevel> |
98 | 132 |
<plantconceptstatus>accepted</plantconceptstatus> |
99 | 133 |
<startdate>epoch</startdate> |
... | ... | |
170 | 204 |
</party_id> |
171 | 205 |
</plantstatus> |
172 | 206 |
<reference_id> |
173 |
<reference> |
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<shortname>Burret</shortname> |
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</reference> |
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<reference/> |
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176 | 208 |
</reference_id> |
177 | 209 |
<plantname_id> |
178 | 210 |
<plantname> |
... | ... | |
358 | 390 |
<plantconcept_id> |
359 | 391 |
<plantconcept> |
360 | 392 |
<plantstatus> |
393 |
<plantlevel>Authority</plantlevel> |
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<plantconceptstatus>accepted</plantconceptstatus> |
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<startdate>epoch</startdate> |
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<party_id> |
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<party/> |
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</party_id> |
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</plantstatus> |
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<reference_id> |
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<reference/> |
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</reference_id> |
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<plantname_id> |
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<plantname> |
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<plantname>Maguire</plantname> |
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</plantname> |
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</plantname_id> |
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</plantconcept> |
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</plantconcept_id> |
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<determinationtype>Computer (automated)</determinationtype> |
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<originaldetermination>false</originaldetermination> |
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<currentdetermination>true</currentdetermination> |
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<determinationdate>epoch</determinationdate> |
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<party_id> |
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<party/> |
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</party_id> |
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</taxondetermination> |
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<taxondetermination> |
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<role_id> |
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<aux_role> |
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<rolecode>computer</rolecode> |
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</aux_role> |
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</role_id> |
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<plantconcept_id> |
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425 |
<plantconcept> |
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426 |
<plantstatus> |
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361 | 427 |
<plantlevel>Family</plantlevel> |
362 | 428 |
<plantconceptstatus>accepted</plantconceptstatus> |
363 | 429 |
<startdate>epoch</startdate> |
... | ... | |
434 | 500 |
</party_id> |
435 | 501 |
</plantstatus> |
436 | 502 |
<reference_id> |
437 |
<reference> |
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438 |
<shortname>Maguire</shortname> |
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</reference> |
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503 |
<reference/> |
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440 | 504 |
</reference_id> |
441 | 505 |
<plantname_id> |
442 | 506 |
<plantname> |
test/accepted_output/NYBG.organisms.VegX.xml | ||
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99 | 99 |
<taxonConceptID>4</taxonConceptID> |
100 | 100 |
</assertion> |
101 | 101 |
</taxonRelationshipAssertion> |
102 |
<taxonRelationshipAssertion> |
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103 |
<assertion> |
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104 |
<taxonConceptID>5</taxonConceptID> |
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105 |
</assertion> |
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106 |
</taxonRelationshipAssertion> |
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102 | 107 |
</taxonRelationshipAssertions> |
103 | 108 |
</taxonDetermination> |
104 | 109 |
<taxonDetermination> |
... | ... | |
121 | 126 |
</taxonRelationshipAssertion> |
122 | 127 |
<taxonRelationshipAssertion> |
123 | 128 |
<assertion> |
124 |
<taxonConceptID>5</taxonConceptID>
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129 |
<taxonConceptID>6</taxonConceptID>
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125 | 130 |
</assertion> |
126 | 131 |
</taxonRelationshipAssertion> |
127 | 132 |
<taxonRelationshipAssertion> |
128 | 133 |
<assertion> |
129 |
<taxonConceptID>6</taxonConceptID>
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134 |
<taxonConceptID>7</taxonConceptID>
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130 | 135 |
</assertion> |
131 | 136 |
</taxonRelationshipAssertion> |
132 | 137 |
<taxonRelationshipAssertion> |
133 | 138 |
<assertion> |
134 |
<taxonConceptID>7</taxonConceptID>
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139 |
<taxonConceptID>8</taxonConceptID>
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135 | 140 |
</assertion> |
136 | 141 |
</taxonRelationshipAssertion> |
137 | 142 |
</taxonRelationshipAssertions> |
... | ... | |
172 | 177 |
<taxonConcept id="4"> |
173 | 178 |
<Rank code="sp"/> |
174 | 179 |
<Name>estrellensis</Name> |
175 |
<AccordingTo> |
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176 |
<Simple>(Raddi) Kuntze</Simple> |
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177 |
</AccordingTo> |
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178 | 180 |
</taxonConcept> |
179 | 181 |
<taxonConcept id="5"> |
182 |
<Rank code="auth"/> |
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183 |
<Name>(Raddi) Kuntze</Name> |
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184 |
</taxonConcept> |
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185 |
<taxonConcept id="6"> |
|
180 | 186 |
<Rank code="reg"/> |
181 | 187 |
<Name>Plantae</Name> |
182 | 188 |
</taxonConcept> |
183 |
<taxonConcept id="6">
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189 |
<taxonConcept id="7">
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184 | 190 |
<Rank code="phyl_div"/> |
185 | 191 |
<Name>Magnoliophyta (flowering plants)</Name> |
186 | 192 |
</taxonConcept> |
187 |
<taxonConcept id="7">
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193 |
<taxonConcept id="8">
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188 | 194 |
<Rank code="fam"/> |
189 | 195 |
<Name>Scrophulariaceae</Name> |
190 | 196 |
</taxonConcept> |
test/accepted_output/NYBG.organisms.VegBIEN.xml | ||
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125 | 125 |
<plantconcept_id> |
126 | 126 |
<plantconcept> |
127 | 127 |
<plantstatus> |
128 |
<plantlevel>Authority</plantlevel> |
|
129 |
<plantconceptstatus>accepted</plantconceptstatus> |
|
130 |
<startdate>epoch</startdate> |
|
131 |
<party_id> |
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132 |
<party/> |
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133 |
</party_id> |
|
134 |
</plantstatus> |
|
135 |
<reference_id> |
|
136 |
<reference/> |
|
137 |
</reference_id> |
|
138 |
<plantname_id> |
|
139 |
<plantname> |
|
140 |
<plantname>(Raddi) Kuntze</plantname> |
|
141 |
</plantname> |
|
142 |
</plantname_id> |
|
143 |
</plantconcept> |
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144 |
</plantconcept_id> |
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145 |
<determinationtype>Author</determinationtype> |
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146 |
<originaldetermination>true</originaldetermination> |
|
147 |
<currentdetermination>true</currentdetermination> |
|
148 |
<determinationdate>epoch</determinationdate> |
|
149 |
<party_id> |
|
150 |
<party/> |
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151 |
</party_id> |
|
152 |
</taxondetermination> |
|
153 |
<taxondetermination> |
|
154 |
<role_id> |
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155 |
<aux_role> |
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156 |
<rolecode>identifier</rolecode> |
|
157 |
</aux_role> |
|
158 |
</role_id> |
|
159 |
<plantconcept_id> |
|
160 |
<plantconcept> |
|
161 |
<plantstatus> |
|
128 | 162 |
<plantlevel>Family</plantlevel> |
129 | 163 |
<plantconceptstatus>accepted</plantconceptstatus> |
130 | 164 |
<startdate>epoch</startdate> |
... | ... | |
227 | 261 |
<plantconcept_id> |
228 | 262 |
<plantconcept> |
229 | 263 |
<plantstatus> |
230 |
<plantlevel>Species</plantlevel>
|
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264 |
<plantlevel>Subkingdom</plantlevel>
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231 | 265 |
<plantconceptstatus>accepted</plantconceptstatus> |
232 | 266 |
<startdate>epoch</startdate> |
233 | 267 |
<party_id> |
... | ... | |
235 | 269 |
</party_id> |
236 | 270 |
</plantstatus> |
237 | 271 |
<reference_id> |
238 |
<reference> |
|
239 |
<referencecontributor> |
|
240 |
<referenceparty_id> |
|
241 |
<referenceparty> |
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242 |
<givenname>(Raddi) Kuntze</givenname> |
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243 |
<surname>(Raddi) Kuntze</surname> |
|
244 |
</referenceparty> |
|
245 |
</referenceparty_id> |
|
246 |
</referencecontributor> |
|
247 |
</reference> |
|
272 |
<reference/> |
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248 | 273 |
</reference_id> |
249 | 274 |
<plantname_id> |
250 | 275 |
<plantname> |
251 |
<plantname>estrellensis</plantname>
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276 |
<plantname>Magnoliophyta (flowering plants)</plantname>
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252 | 277 |
</plantname> |
253 | 278 |
</plantname_id> |
254 | 279 |
</plantconcept> |
... | ... | |
270 | 295 |
<plantconcept_id> |
271 | 296 |
<plantconcept> |
272 | 297 |
<plantstatus> |
273 |
<plantlevel>Subkingdom</plantlevel>
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298 |
<plantlevel>Species</plantlevel>
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|
274 | 299 |
<plantconceptstatus>accepted</plantconceptstatus> |
275 | 300 |
<startdate>epoch</startdate> |
276 | 301 |
<party_id> |
... | ... | |
282 | 307 |
</reference_id> |
283 | 308 |
<plantname_id> |
284 | 309 |
<plantname> |
285 |
<plantname>Magnoliophyta (flowering plants)</plantname>
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|
310 |
<plantname>estrellensis</plantname>
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286 | 311 |
</plantname> |
287 | 312 |
</plantname_id> |
288 | 313 |
</plantconcept> |
inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
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20 | 20 |
Habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
21 | 21 |
Ind,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
22 | 22 |
Notes,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes", |
23 |
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
23 | 24 |
Family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
24 | 25 |
Genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
25 |
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
26 | 26 |
Species,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
27 | 27 |
infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}", |
28 | 28 |
infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last", |
mappings/SALVIAS_db-VegBIEN.organisms.csv | ||
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20 | 20 |
Habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
21 | 21 |
Ind,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
22 | 22 |
Notes,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes", |
23 |
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
23 | 24 |
Family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
24 | 25 |
Genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
25 |
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
26 | 26 |
Species,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
27 | 27 |
infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}", |
28 | 28 |
infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last", |
mappings/VegX-VegBIEN.organisms.csv | ||
---|---|---|
102 | 102 |
/simpleUserdefined[name=individualCode]/value,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue" |
103 | 103 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes" |
104 | 104 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[*_id/reference]/*_id/*/plantname/_alt/1" |
105 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
|
105 | 106 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
106 | 107 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
107 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname" |
|
108 | 108 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
109 | 109 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}" |
110 | 110 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last" |
... | ... | |
112 | 112 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month","/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month" |
113 | 113 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year","/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year" |
114 | 114 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=false,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}" |
115 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
|
115 | 116 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
116 | 117 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
117 | 118 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
118 | 119 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
119 | 120 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
120 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}" |
|
121 | 121 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
122 | 122 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname" |
123 | 123 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/{taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[*_id/reference]/*_id/*/plantname/_alt/2,taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}" |
mappings/NYBG-VegX.organisms.csv | ||
---|---|---|
14 | 14 |
"Genus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name", |
15 | 15 |
"Species","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name", |
16 | 16 |
"Subspecies","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name", |
17 |
"ScientificNameAuthor","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
|
|
17 |
"ScientificNameAuthor","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
|
|
18 | 18 |
"IdentifiedBy","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","Brad: Bob: does this look correct for VegBank?" |
19 | 19 |
"YearIdentified","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year", |
20 | 20 |
"MonthIdentified","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month", |
mappings/SALVIAS-VegX.organisms.csv | ||
---|---|---|
23 | 23 |
"family","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name", |
24 | 24 |
"genus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name", |
25 | 25 |
"specific_epithet","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name", |
26 |
"specific_authority","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
|
|
26 |
"specific_authority","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
|
|
27 | 27 |
"infra_rank_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank", |
28 | 28 |
"infra_ep_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name", |
29 | 29 |
"cf_aff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
mappings/NYBG-VegBIEN.organisms.csv | ||
---|---|---|
29 | 29 |
MonthIdentified,"/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month", |
30 | 30 |
YearIdentified,"/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year", |
31 | 31 |
IdentifiedBy,"/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=false,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank? |
32 |
ScientificNameAuthor,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author" |
|
32 | 33 |
Class,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
33 | 34 |
Family,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
34 | 35 |
Genus,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
35 | 36 |
Kingdom,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
36 | 37 |
Order,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
37 |
ScientificNameAuthor,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author" |
|
38 | 38 |
Phylum,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
39 | 39 |
Subspecies,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
40 | 40 |
Species,"/{taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[*_id/reference]/*_id/*/plantname/_alt/2,taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}", |
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv | ||
---|---|---|
20 | 20 |
Habit,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
21 | 21 |
Ind,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
22 | 22 |
Notes,/taxondetermination[rolecode=collector]/notes, |
23 |
auth,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
23 | 24 |
Family,"/taxondetermination[rolecode=computer,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname", |
24 | 25 |
Genus,"/taxondetermination[rolecode=computer,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname", |
25 |
auth,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
26 | 26 |
Species,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname", |
27 | 27 |
infra_rank_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept/_name/first}", |
28 | 28 |
infra_ep_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/_name/last", |
mappings/for_review/NYBG-VegX.organisms.csv | ||
---|---|---|
14 | 14 |
Genus,//*s/taxonConcept[@code=gen]/Name, |
15 | 15 |
Species,//*s/taxonConcept[@code=sp]/Name, |
16 | 16 |
Subspecies,//*s/taxonConcept[@code=ssp]/Name, |
17 |
ScientificNameAuthor,//*s/taxonConcept[@code=sp]/AccordingTo/Simple,"Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
|
|
17 |
ScientificNameAuthor,//*s/taxonConcept[@code=auth]/Name,"Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
|
|
18 | 18 |
IdentifiedBy,"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}",Brad: Bob: does this look correct for VegBank? |
19 | 19 |
YearIdentified,//*s/taxonDetermination[role=identifier]/date/_date/year, |
20 | 20 |
MonthIdentified,//*s/taxonDetermination[role=identifier]/date/_date/month, |
mappings/for_review/VegX-VegBIEN.organisms.csv | ||
---|---|---|
102 | 102 |
/simpleUserdefined[name=individualCode]/value,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]/definedvalue" |
103 | 103 |
//note/text,/taxondetermination[rolecode=collector]/notes |
104 | 104 |
//taxonName/Simple,/taxondetermination[rolecode=collector]/*_id/plantconcept/*_id/*/plantname/_alt/1 |
105 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname" |
|
105 | 106 |
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=computer,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname" |
106 | 107 |
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=computer,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname" |
107 |
//*s/taxonConcept[@code=sp]/AccordingTo/Simple,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname" |
|
108 | 108 |
//*s/taxonConcept[@code=sp]/Name,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname" |
109 | 109 |
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept/_name/first}" |
110 | 110 |
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/_name/last" |
... | ... | |
112 | 112 |
//*s/taxonDetermination[role=identifier]/date/_date/month,/taxondetermination[rolecode=identifier]/determinationdate/_date/month |
113 | 113 |
//*s/taxonDetermination[role=identifier]/date/_date/year,/taxondetermination[rolecode=identifier]/determinationdate/_date/year |
114 | 114 |
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}" |
115 |
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname" |
|
115 | 116 |
//*s/taxonConcept[@code=cl]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname" |
116 | 117 |
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname" |
117 | 118 |
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname" |
118 | 119 |
//*s/taxonConcept[@code=reg]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname" |
119 | 120 |
//*s/taxonConcept[@code=ord]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname" |
120 |
//*s/taxonConcept[@code=sp]/AccordingTo/Simple,"/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}" |
|
121 | 121 |
//*s/taxonConcept[@code=phyl_div]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname" |
122 | 122 |
//*s/taxonConcept[@code=ssp]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname" |
123 | 123 |
//*s/taxonConcept[@code=sp]/Name,"/{taxondetermination[rolecode=collector]/*_id/plantconcept/*_id/*/plantname/_alt/2,taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname}" |
mappings/for_review/SALVIAS-VegX.organisms.csv | ||
---|---|---|
23 | 23 |
family,//*s/taxonConcept[@code=fam]/Name, |
24 | 24 |
genus,//*s/taxonConcept[@code=gen]/Name, |
25 | 25 |
specific_epithet,//*s/taxonConcept[@code=sp]/Name, |
26 |
specific_authority,//*s/taxonConcept[@code=sp]/AccordingTo/Simple,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
26 |
specific_authority,//*s/taxonConcept[@code=auth]/Name,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
27 | 27 |
infra_rank_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank, |
28 | 28 |
infra_ep_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name, |
29 | 29 |
cf_aff,//*s/taxonDetermination[role=computer]/note,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
mappings/for_review/NYBG-VegBIEN.organisms.csv | ||
---|---|---|
29 | 29 |
MonthIdentified,/taxondetermination[rolecode=identifier]/determinationdate/_date/month, |
30 | 30 |
YearIdentified,/taxondetermination[rolecode=identifier]/determinationdate/_date/year, |
31 | 31 |
IdentifiedBy,"/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank? |
32 |
ScientificNameAuthor,"/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author" |
|
32 | 33 |
Class,"/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname", |
33 | 34 |
Family,"/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname", |
34 | 35 |
Genus,"/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname", |
35 | 36 |
Kingdom,"/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname", |
36 | 37 |
Order,"/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname", |
37 |
ScientificNameAuthor,"/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author" |
|
38 | 38 |
Phylum,"/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname", |
39 | 39 |
Subspecies,"/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname", |
40 | 40 |
Species,"/{taxondetermination[rolecode=collector]/*_id/plantconcept/*_id/*/plantname/_alt/2,taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname}", |
mappings/for_review/SALVIAS_db-VegX.organisms.csv | ||
---|---|---|
30 | 30 |
Genus,//*s/taxonConcept[@code=gen]/Name, |
31 | 31 |
GenAuth,, |
32 | 32 |
Species,//*s/taxonConcept[@code=sp]/Name, |
33 |
auth,//*s/taxonConcept[@code=sp]/AccordingTo/Simple,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
33 |
auth,//*s/taxonConcept[@code=auth]/Name,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
34 | 34 |
infra_rank_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank, |
35 | 35 |
infra_ep_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name, |
36 | 36 |
infra_auth_1,, |
mappings/for_review/SALVIAS-VegBIEN.organisms.csv | ||
---|---|---|
29 | 29 |
habit,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
30 | 30 |
individual_code,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
31 | 31 |
notes,/taxondetermination[rolecode=collector]/notes, |
32 |
specific_authority,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
32 | 33 |
family,"/taxondetermination[rolecode=computer,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname", |
33 | 34 |
genus,"/taxondetermination[rolecode=computer,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname", |
34 |
specific_authority,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
35 | 35 |
specific_epithet,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname", |
36 | 36 |
infra_rank_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept/_name/first}", |
37 | 37 |
infra_ep_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/_name/last", |
mappings/SALVIAS_db-VegX.organisms.csv | ||
---|---|---|
30 | 30 |
"Genus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name", |
31 | 31 |
"GenAuth",, |
32 | 32 |
"Species","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name", |
33 |
"auth","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
|
|
33 |
"auth","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
|
|
34 | 34 |
"infra_rank_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank", |
35 | 35 |
"infra_ep_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name", |
36 | 36 |
"infra_auth_1",, |
mappings/SALVIAS-VegBIEN.organisms.csv | ||
---|---|---|
29 | 29 |
habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait." |
30 | 30 |
individual_code,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot." |
31 | 31 |
notes,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes", |
32 |
specific_authority,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
32 | 33 |
family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
33 | 34 |
genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
34 |
specific_authority,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss. |
|
35 | 35 |
specific_epithet,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname", |
36 | 36 |
infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}", |
37 | 37 |
infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last", |
Also available in: Unified diff
mappings: Map ScientificNameAuthor to plantconcept with rank author