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Revision 569

mappings: Map ScientificNameAuthor to plantconcept with rank author

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test/accepted_output/SALVIAS_db.organisms.VegX.xml
101 101
                        <taxonConceptID>2</taxonConceptID>
102 102
                    </assertion>
103 103
                </taxonRelationshipAssertion>
104
                <taxonRelationshipAssertion>
105
                    <assertion>
106
                        <taxonConceptID>3</taxonConceptID>
107
                    </assertion>
108
                </taxonRelationshipAssertion>
104 109
            </taxonRelationshipAssertions>
105 110
        </taxonDetermination>
106 111
        <taxonDetermination>
......
111 116
            <taxonRelationshipAssertions>
112 117
                <taxonRelationshipAssertion>
113 118
                    <assertion>
114
                        <taxonConceptID>3</taxonConceptID>
119
                        <taxonConceptID>4</taxonConceptID>
115 120
                    </assertion>
116 121
                </taxonRelationshipAssertion>
117 122
                <taxonRelationshipAssertion>
118 123
                    <assertion>
119
                        <taxonConceptID>4</taxonConceptID>
124
                        <taxonConceptID>5</taxonConceptID>
120 125
                    </assertion>
121 126
                </taxonRelationshipAssertion>
122 127
            </taxonRelationshipAssertions>
......
136 141
            <taxonRelationshipAssertions>
137 142
                <taxonRelationshipAssertion>
138 143
                    <assertion>
139
                        <taxonConceptID>5</taxonConceptID>
144
                        <taxonConceptID>6</taxonConceptID>
140 145
                    </assertion>
141 146
                </taxonRelationshipAssertion>
142 147
                <taxonRelationshipAssertion>
143 148
                    <assertion>
144
                        <taxonConceptID>6</taxonConceptID>
149
                        <taxonConceptID>7</taxonConceptID>
145 150
                    </assertion>
146 151
                </taxonRelationshipAssertion>
147 152
                <taxonRelationshipAssertion>
148 153
                    <assertion>
149
                        <taxonConceptID>7</taxonConceptID>
154
                        <taxonConceptID>8</taxonConceptID>
150 155
                    </assertion>
151 156
                </taxonRelationshipAssertion>
157
                <taxonRelationshipAssertion>
158
                    <assertion>
159
                        <taxonConceptID>9</taxonConceptID>
160
                    </assertion>
161
                </taxonRelationshipAssertion>
152 162
            </taxonRelationshipAssertions>
153 163
        </taxonDetermination>
154 164
        <taxonDetermination>
......
159 169
            <taxonRelationshipAssertions>
160 170
                <taxonRelationshipAssertion>
161 171
                    <assertion>
162
                        <taxonConceptID>8</taxonConceptID>
172
                        <taxonConceptID>10</taxonConceptID>
163 173
                    </assertion>
164 174
                </taxonRelationshipAssertion>
165 175
                <taxonRelationshipAssertion>
166 176
                    <assertion>
167
                        <taxonConceptID>9</taxonConceptID>
177
                        <taxonConceptID>11</taxonConceptID>
168 178
                    </assertion>
169 179
                </taxonRelationshipAssertion>
170 180
            </taxonRelationshipAssertions>
......
182 192
        <taxonConcept id="2">
183 193
            <Rank code="sp"/>
184 194
            <Name>seleri</Name>
185
            <AccordingTo>
186
                <Simple>Burret</Simple>
187
            </AccordingTo>
188 195
        </taxonConcept>
189 196
        <taxonConcept id="3">
197
            <Rank code="auth"/>
198
            <Name>Burret</Name>
199
        </taxonConcept>
200
        <taxonConcept id="4">
190 201
            <Rank code="fam"/>
191 202
            <Name>Arecaceae</Name>
192 203
        </taxonConcept>
193
        <taxonConcept id="4">
204
        <taxonConcept id="5">
194 205
            <Rank code="sp"/>
195 206
            <Name>seleri</Name>
196 207
        </taxonConcept>
197
        <taxonConcept id="5">
208
        <taxonConcept id="6">
198 209
            <Rank code="fam"/>
199 210
            <Name>Clusiaceae</Name>
200 211
        </taxonConcept>
201
        <taxonConcept id="6">
212
        <taxonConcept id="7">
202 213
            <Rank code="gen"/>
203 214
            <Name>Tovomitopsis</Name>
204 215
        </taxonConcept>
205
        <taxonConcept id="7">
216
        <taxonConcept id="8">
206 217
            <Rank code="sp"/>
207 218
            <Name>allenii</Name>
208
            <AccordingTo>
209
                <Simple>Maguire</Simple>
210
            </AccordingTo>
211 219
        </taxonConcept>
212
        <taxonConcept id="8">
220
        <taxonConcept id="9">
221
            <Rank code="auth"/>
222
            <Name>Maguire</Name>
223
        </taxonConcept>
224
        <taxonConcept id="10">
213 225
            <Rank code="fam"/>
214 226
            <Name>Clusiaceae</Name>
215 227
        </taxonConcept>
216
        <taxonConcept id="9">
228
        <taxonConcept id="11">
217 229
            <Rank code="sp"/>
218 230
            <Name>allenii</Name>
219 231
        </taxonConcept>
test/accepted_output/SALVIAS_db.organisms.VegBIEN.xml
94 94
            <plantconcept_id>
95 95
                <plantconcept>
96 96
                    <plantstatus>
97
                        <plantlevel>Authority</plantlevel>
98
                        <plantconceptstatus>accepted</plantconceptstatus>
99
                        <startdate>epoch</startdate>
100
                        <party_id>
101
                            <party/>
102
                        </party_id>
103
                    </plantstatus>
104
                    <reference_id>
105
                        <reference/>
106
                    </reference_id>
107
                    <plantname_id>
108
                        <plantname>
109
                            <plantname>Burret</plantname>
110
                        </plantname>
111
                    </plantname_id>
112
                </plantconcept>
113
            </plantconcept_id>
114
            <determinationtype>Computer (automated)</determinationtype>
115
            <originaldetermination>false</originaldetermination>
116
            <currentdetermination>true</currentdetermination>
117
            <determinationdate>epoch</determinationdate>
118
            <party_id>
119
                <party/>
120
            </party_id>
121
        </taxondetermination>
122
        <taxondetermination>
123
            <role_id>
124
                <aux_role>
125
                    <rolecode>computer</rolecode>
126
                </aux_role>
127
            </role_id>
128
            <plantconcept_id>
129
                <plantconcept>
130
                    <plantstatus>
97 131
                        <plantlevel>Family</plantlevel>
98 132
                        <plantconceptstatus>accepted</plantconceptstatus>
99 133
                        <startdate>epoch</startdate>
......
170 204
                        </party_id>
171 205
                    </plantstatus>
172 206
                    <reference_id>
173
                        <reference>
174
                            <shortname>Burret</shortname>
175
                        </reference>
207
                        <reference/>
176 208
                    </reference_id>
177 209
                    <plantname_id>
178 210
                        <plantname>
......
358 390
            <plantconcept_id>
359 391
                <plantconcept>
360 392
                    <plantstatus>
393
                        <plantlevel>Authority</plantlevel>
394
                        <plantconceptstatus>accepted</plantconceptstatus>
395
                        <startdate>epoch</startdate>
396
                        <party_id>
397
                            <party/>
398
                        </party_id>
399
                    </plantstatus>
400
                    <reference_id>
401
                        <reference/>
402
                    </reference_id>
403
                    <plantname_id>
404
                        <plantname>
405
                            <plantname>Maguire</plantname>
406
                        </plantname>
407
                    </plantname_id>
408
                </plantconcept>
409
            </plantconcept_id>
410
            <determinationtype>Computer (automated)</determinationtype>
411
            <originaldetermination>false</originaldetermination>
412
            <currentdetermination>true</currentdetermination>
413
            <determinationdate>epoch</determinationdate>
414
            <party_id>
415
                <party/>
416
            </party_id>
417
        </taxondetermination>
418
        <taxondetermination>
419
            <role_id>
420
                <aux_role>
421
                    <rolecode>computer</rolecode>
422
                </aux_role>
423
            </role_id>
424
            <plantconcept_id>
425
                <plantconcept>
426
                    <plantstatus>
361 427
                        <plantlevel>Family</plantlevel>
362 428
                        <plantconceptstatus>accepted</plantconceptstatus>
363 429
                        <startdate>epoch</startdate>
......
434 500
                        </party_id>
435 501
                    </plantstatus>
436 502
                    <reference_id>
437
                        <reference>
438
                            <shortname>Maguire</shortname>
439
                        </reference>
503
                        <reference/>
440 504
                    </reference_id>
441 505
                    <plantname_id>
442 506
                        <plantname>
test/accepted_output/NYBG.organisms.VegX.xml
99 99
                        <taxonConceptID>4</taxonConceptID>
100 100
                    </assertion>
101 101
                </taxonRelationshipAssertion>
102
                <taxonRelationshipAssertion>
103
                    <assertion>
104
                        <taxonConceptID>5</taxonConceptID>
105
                    </assertion>
106
                </taxonRelationshipAssertion>
102 107
            </taxonRelationshipAssertions>
103 108
        </taxonDetermination>
104 109
        <taxonDetermination>
......
121 126
                </taxonRelationshipAssertion>
122 127
                <taxonRelationshipAssertion>
123 128
                    <assertion>
124
                        <taxonConceptID>5</taxonConceptID>
129
                        <taxonConceptID>6</taxonConceptID>
125 130
                    </assertion>
126 131
                </taxonRelationshipAssertion>
127 132
                <taxonRelationshipAssertion>
128 133
                    <assertion>
129
                        <taxonConceptID>6</taxonConceptID>
134
                        <taxonConceptID>7</taxonConceptID>
130 135
                    </assertion>
131 136
                </taxonRelationshipAssertion>
132 137
                <taxonRelationshipAssertion>
133 138
                    <assertion>
134
                        <taxonConceptID>7</taxonConceptID>
139
                        <taxonConceptID>8</taxonConceptID>
135 140
                    </assertion>
136 141
                </taxonRelationshipAssertion>
137 142
            </taxonRelationshipAssertions>
......
172 177
        <taxonConcept id="4">
173 178
            <Rank code="sp"/>
174 179
            <Name>estrellensis</Name>
175
            <AccordingTo>
176
                <Simple>(Raddi) Kuntze</Simple>
177
            </AccordingTo>
178 180
        </taxonConcept>
179 181
        <taxonConcept id="5">
182
            <Rank code="auth"/>
183
            <Name>(Raddi) Kuntze</Name>
184
        </taxonConcept>
185
        <taxonConcept id="6">
180 186
            <Rank code="reg"/>
181 187
            <Name>Plantae</Name>
182 188
        </taxonConcept>
183
        <taxonConcept id="6">
189
        <taxonConcept id="7">
184 190
            <Rank code="phyl_div"/>
185 191
            <Name>Magnoliophyta (flowering plants)</Name>
186 192
        </taxonConcept>
187
        <taxonConcept id="7">
193
        <taxonConcept id="8">
188 194
            <Rank code="fam"/>
189 195
            <Name>Scrophulariaceae</Name>
190 196
        </taxonConcept>
test/accepted_output/NYBG.organisms.VegBIEN.xml
125 125
            <plantconcept_id>
126 126
                <plantconcept>
127 127
                    <plantstatus>
128
                        <plantlevel>Authority</plantlevel>
129
                        <plantconceptstatus>accepted</plantconceptstatus>
130
                        <startdate>epoch</startdate>
131
                        <party_id>
132
                            <party/>
133
                        </party_id>
134
                    </plantstatus>
135
                    <reference_id>
136
                        <reference/>
137
                    </reference_id>
138
                    <plantname_id>
139
                        <plantname>
140
                            <plantname>(Raddi) Kuntze</plantname>
141
                        </plantname>
142
                    </plantname_id>
143
                </plantconcept>
144
            </plantconcept_id>
145
            <determinationtype>Author</determinationtype>
146
            <originaldetermination>true</originaldetermination>
147
            <currentdetermination>true</currentdetermination>
148
            <determinationdate>epoch</determinationdate>
149
            <party_id>
150
                <party/>
151
            </party_id>
152
        </taxondetermination>
153
        <taxondetermination>
154
            <role_id>
155
                <aux_role>
156
                    <rolecode>identifier</rolecode>
157
                </aux_role>
158
            </role_id>
159
            <plantconcept_id>
160
                <plantconcept>
161
                    <plantstatus>
128 162
                        <plantlevel>Family</plantlevel>
129 163
                        <plantconceptstatus>accepted</plantconceptstatus>
130 164
                        <startdate>epoch</startdate>
......
227 261
            <plantconcept_id>
228 262
                <plantconcept>
229 263
                    <plantstatus>
230
                        <plantlevel>Species</plantlevel>
264
                        <plantlevel>Subkingdom</plantlevel>
231 265
                        <plantconceptstatus>accepted</plantconceptstatus>
232 266
                        <startdate>epoch</startdate>
233 267
                        <party_id>
......
235 269
                        </party_id>
236 270
                    </plantstatus>
237 271
                    <reference_id>
238
                        <reference>
239
                            <referencecontributor>
240
                                <referenceparty_id>
241
                                    <referenceparty>
242
                                        <givenname>(Raddi) Kuntze</givenname>
243
                                        <surname>(Raddi) Kuntze</surname>
244
                                    </referenceparty>
245
                                </referenceparty_id>
246
                            </referencecontributor>
247
                        </reference>
272
                        <reference/>
248 273
                    </reference_id>
249 274
                    <plantname_id>
250 275
                        <plantname>
251
                            <plantname>estrellensis</plantname>
276
                            <plantname>Magnoliophyta (flowering plants)</plantname>
252 277
                        </plantname>
253 278
                    </plantname_id>
254 279
                </plantconcept>
......
270 295
            <plantconcept_id>
271 296
                <plantconcept>
272 297
                    <plantstatus>
273
                        <plantlevel>Subkingdom</plantlevel>
298
                        <plantlevel>Species</plantlevel>
274 299
                        <plantconceptstatus>accepted</plantconceptstatus>
275 300
                        <startdate>epoch</startdate>
276 301
                        <party_id>
......
282 307
                    </reference_id>
283 308
                    <plantname_id>
284 309
                        <plantname>
285
                            <plantname>Magnoliophyta (flowering plants)</plantname>
310
                            <plantname>estrellensis</plantname>
286 311
                        </plantname>
287 312
                    </plantname_id>
288 313
                </plantconcept>
inputs/SALVIAS/maps/VegBIEN.organisms.csv
20 20
Habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 21
Ind,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
22 22
Notes,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes",
23
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
23 24
Family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
24 25
Genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
25
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
26 26
Species,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
27 27
infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}",
28 28
infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last",
mappings/SALVIAS_db-VegBIEN.organisms.csv
20 20
Habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 21
Ind,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
22 22
Notes,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes",
23
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
23 24
Family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
24 25
Genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
25
auth,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
26 26
Species,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
27 27
infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}",
28 28
infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last",
mappings/VegX-VegBIEN.organisms.csv
102 102
/simpleUserdefined[name=individualCode]/value,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
103 103
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes"
104 104
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[*_id/reference]/*_id/*/plantname/_alt/1"
105
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
105 106
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
106 107
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
107
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname"
108 108
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
109 109
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}"
110 110
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last"
......
112 112
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month","/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month"
113 113
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year","/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year"
114 114
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=false,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
115
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
115 116
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
116 117
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
117 118
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
118 119
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
119 120
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
120
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}"
121 121
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
122 122
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname"
123 123
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/{taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[*_id/reference]/*_id/*/plantname/_alt/2,taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}"
mappings/NYBG-VegX.organisms.csv
14 14
"Genus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name",
15 15
"Species","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name",
16 16
"Subspecies","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name",
17
"ScientificNameAuthor","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
17
"ScientificNameAuthor","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
18 18
"IdentifiedBy","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","Brad: Bob: does this look correct for VegBank?"
19 19
"YearIdentified","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year",
20 20
"MonthIdentified","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month",
mappings/SALVIAS-VegX.organisms.csv
23 23
"family","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name",
24 24
"genus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name",
25 25
"specific_epithet","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name",
26
"specific_authority","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
26
"specific_authority","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
27 27
"infra_rank_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank",
28 28
"infra_ep_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name",
29 29
"cf_aff","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
mappings/NYBG-VegBIEN.organisms.csv
29 29
MonthIdentified,"/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month",
30 30
YearIdentified,"/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year",
31 31
IdentifiedBy,"/taxondetermination[role_id/aux_role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=false,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
32
ScientificNameAuthor,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
32 33
Class,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
33 34
Family,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
34 35
Genus,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
35 36
Kingdom,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
36 37
Order,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
37
ScientificNameAuthor,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
38 38
Phylum,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
39 39
Subspecies,"/taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
40 40
Species,"/{taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[*_id/reference]/*_id/*/plantname/_alt/2,taxondetermination[role_id/aux_role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname}",
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv
20 20
Habit,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 21
Ind,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
22 22
Notes,/taxondetermination[rolecode=collector]/notes,
23
auth,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
23 24
Family,"/taxondetermination[rolecode=computer,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",
24 25
Genus,"/taxondetermination[rolecode=computer,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",
25
auth,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
26 26
Species,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",
27 27
infra_rank_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept/_name/first}",
28 28
infra_ep_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/_name/last",
mappings/for_review/NYBG-VegX.organisms.csv
14 14
Genus,//*s/taxonConcept[@code=gen]/Name,
15 15
Species,//*s/taxonConcept[@code=sp]/Name,
16 16
Subspecies,//*s/taxonConcept[@code=ssp]/Name,
17
ScientificNameAuthor,//*s/taxonConcept[@code=sp]/AccordingTo/Simple,"Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
17
ScientificNameAuthor,//*s/taxonConcept[@code=auth]/Name,"Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
18 18
IdentifiedBy,"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}",Brad: Bob: does this look correct for VegBank?
19 19
YearIdentified,//*s/taxonDetermination[role=identifier]/date/_date/year,
20 20
MonthIdentified,//*s/taxonDetermination[role=identifier]/date/_date/month,
mappings/for_review/VegX-VegBIEN.organisms.csv
102 102
/simpleUserdefined[name=individualCode]/value,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]/definedvalue"
103 103
//note/text,/taxondetermination[rolecode=collector]/notes
104 104
//taxonName/Simple,/taxondetermination[rolecode=collector]/*_id/plantconcept/*_id/*/plantname/_alt/1
105
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname"
105 106
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=computer,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname"
106 107
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=computer,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname"
107
//*s/taxonConcept[@code=sp]/AccordingTo/Simple,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname"
108 108
//*s/taxonConcept[@code=sp]/Name,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname"
109 109
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept/_name/first}"
110 110
//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/_name/last"
......
112 112
//*s/taxonDetermination[role=identifier]/date/_date/month,/taxondetermination[rolecode=identifier]/determinationdate/_date/month
113 113
//*s/taxonDetermination[role=identifier]/date/_date/year,/taxondetermination[rolecode=identifier]/determinationdate/_date/year
114 114
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
115
//*s/taxonConcept[@code=auth]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname"
115 116
//*s/taxonConcept[@code=cl]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname"
116 117
//*s/taxonConcept[@code=fam]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname"
117 118
//*s/taxonConcept[@code=gen]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname"
118 119
//*s/taxonConcept[@code=reg]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname"
119 120
//*s/taxonConcept[@code=ord]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname"
120
//*s/taxonConcept[@code=sp]/AccordingTo/Simple,"/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}"
121 121
//*s/taxonConcept[@code=phyl_div]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname"
122 122
//*s/taxonConcept[@code=ssp]/Name,"/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname"
123 123
//*s/taxonConcept[@code=sp]/Name,"/{taxondetermination[rolecode=collector]/*_id/plantconcept/*_id/*/plantname/_alt/2,taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname}"
mappings/for_review/SALVIAS-VegX.organisms.csv
23 23
family,//*s/taxonConcept[@code=fam]/Name,
24 24
genus,//*s/taxonConcept[@code=gen]/Name,
25 25
specific_epithet,//*s/taxonConcept[@code=sp]/Name,
26
specific_authority,//*s/taxonConcept[@code=sp]/AccordingTo/Simple,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
26
specific_authority,//*s/taxonConcept[@code=auth]/Name,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
27 27
infra_rank_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,
28 28
infra_ep_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,
29 29
cf_aff,//*s/taxonDetermination[role=computer]/note,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
mappings/for_review/NYBG-VegBIEN.organisms.csv
29 29
MonthIdentified,/taxondetermination[rolecode=identifier]/determinationdate/_date/month,
30 30
YearIdentified,/taxondetermination[rolecode=identifier]/determinationdate/_date/year,
31 31
IdentifiedBy,"/taxondetermination[rolecode=identifier]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
32
ScientificNameAuthor,"/taxondetermination[rolecode=identifier,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
32 33
Class,"/taxondetermination[rolecode=identifier,plantlevel=Class]/*_id/plantconcept/*_id/*/plantname",
33 34
Family,"/taxondetermination[rolecode=identifier,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",
34 35
Genus,"/taxondetermination[rolecode=identifier,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",
35 36
Kingdom,"/taxondetermination[rolecode=identifier,plantlevel=Kingdom]/*_id/plantconcept/*_id/*/plantname",
36 37
Order,"/taxondetermination[rolecode=identifier,plantlevel=Order]/*_id/plantconcept/*_id/*/plantname",
37
ScientificNameAuthor,"/taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/reference/referencecontributor/*_id/referenceparty/{givenname,surname}","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
38 38
Phylum,"/taxondetermination[rolecode=identifier,plantlevel=Subkingdom]/*_id/plantconcept/*_id/*/plantname",
39 39
Subspecies,"/taxondetermination[rolecode=identifier,plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname",
40 40
Species,"/{taxondetermination[rolecode=collector]/*_id/plantconcept/*_id/*/plantname/_alt/2,taxondetermination[rolecode=identifier,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname}",
mappings/for_review/SALVIAS_db-VegX.organisms.csv
30 30
Genus,//*s/taxonConcept[@code=gen]/Name,
31 31
GenAuth,,
32 32
Species,//*s/taxonConcept[@code=sp]/Name,
33
auth,//*s/taxonConcept[@code=sp]/AccordingTo/Simple,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
33
auth,//*s/taxonConcept[@code=auth]/Name,Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
34 34
infra_rank_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Rank,
35 35
infra_ep_1,//*s/taxonConcept[@code=TaxonomicRankBelowSubspeciesEnum]/Name,
36 36
infra_auth_1,,
mappings/for_review/SALVIAS-VegBIEN.organisms.csv
29 29
habit,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
30 30
individual_code,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
31 31
notes,/taxondetermination[rolecode=collector]/notes,
32
specific_authority,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
32 33
family,"/taxondetermination[rolecode=computer,plantlevel=Family]/*_id/plantconcept/*_id/*/plantname",
33 34
genus,"/taxondetermination[rolecode=computer,plantlevel=Genus]/*_id/plantconcept/*_id/*/plantname",
34
specific_authority,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
35 35
specific_epithet,"/taxondetermination[rolecode=computer,plantlevel=Species]/*_id/plantconcept/*_id/*/plantname",
36 36
infra_rank_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept/_name/first}",
37 37
infra_ep_1,"/taxondetermination[rolecode=computer,plantlevel=Subspecies]/*_id/plantconcept/_name/last",
mappings/SALVIAS_db-VegX.organisms.csv
30 30
"Genus","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name",
31 31
"GenAuth",,
32 32
"Species","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name",
33
"auth","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/AccordingTo/Simple","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
33
"auth","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss."
34 34
"infra_rank_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank",
35 35
"infra_ep_1","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name",
36 36
"infra_auth_1",,
mappings/SALVIAS-VegBIEN.organisms.csv
29 29
habit,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
30 30
individual_code,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
31 31
notes,"/taxondetermination[role_id/aux_role/rolecode=collector]:[determinationtype=Author,originaldetermination=false,currentdetermination=true,*_id/party]/notes",
32
specific_authority,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
32 33
family,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
33 34
genus,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
34
specific_authority,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]/*_id/plantconcept/*_id/reference/shortname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
35 35
specific_epithet,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/*_id/*/plantname",
36 36
infra_rank_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/{*_id/*/plantname/_name/first,*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/first}",
37 37
infra_ep_1,"/taxondetermination[role_id/aux_role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",originaldetermination=false,currentdetermination=true,determinationdate=epoch,*_id/party]/*_id/plantconcept:[plantstatus:[plantconceptstatus=accepted,startdate=epoch,*_id/party],*_id/reference]/_name/last",

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