Revision 573
Added by Aaron Marcuse-Kubitza about 13 years ago
mappings/VegX-VegBIEN.organisms.csv | ||
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91 | 91 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}" |
92 | 92 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}" |
93 | 93 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName",/specimen:[*_id/reference]/collector_id/party/{surname} |
94 |
/simpleUserdefined[name=collectorNumberDwc]/value,/specimen:[*_id/reference]/collectornumber_dwc |
|
94 | 95 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,"/specimen:[*_id/reference]/{museum_id/party/organizationname,collectioncode_dwc/_namePart/last}" |
95 | 96 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/first,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first} |
96 | 97 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/last,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}" |
mappings/NYBG-VegX.organisms.csv | ||
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20 | 20 |
"MonthIdentified","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month", |
21 | 21 |
"DayIdentified","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/day", |
22 | 22 |
"TypeStatus",,"Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN" |
23 |
"CollectorNumber",,"Brad: OMIT; db-specific element, not relevant to VB/VX" |
|
23 |
"CollectorNumber","/simpleUserdefined[name=collectorNumberDwc]/value","Brad: OMIT; db-specific element, not relevant to VB/VX"
|
|
24 | 24 |
"FieldNumber","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode","Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?" |
25 | 25 |
"Collector","/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?" |
26 | 26 |
"YearCollected","/*ID->/*s/plotObservation/obsStartDate/_date/year", |
mappings/NYBG-VegBIEN.organisms.csv | ||
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20 | 20 |
Vegetation,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Habitat'. Bob, Nick: keep as user defined or create special element?" |
21 | 21 |
FieldNumber,/specimen:[*_id/reference]/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?" |
22 | 22 |
Collector,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen? |
23 |
CollectorNumber,/specimen:[*_id/reference]/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX" |
|
23 | 24 |
InstitutionCode,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first}, |
24 | 25 |
CollectionCode,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
25 | 26 |
Sex,"/taxondetermination[role_id/aux_role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
mappings/for_review/NYBG-VegX.organisms.csv | ||
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20 | 20 |
MonthIdentified,//*s/taxonDetermination[role=identifier]/date/_date/month, |
21 | 21 |
DayIdentified,//*s/taxonDetermination[role=identifier]/date/_date/day, |
22 | 22 |
TypeStatus,,Brad: OMIT (?). Indicates whether this specimen served as type for taxon name. Probably not relevant for BIEN |
23 |
CollectorNumber,,"Brad: OMIT; db-specific element, not relevant to VB/VX" |
|
23 |
CollectorNumber,/simpleUserdefined[name=collectorNumberDwc]/value,"Brad: OMIT; db-specific element, not relevant to VB/VX"
|
|
24 | 24 |
FieldNumber,//taxonNameUsageConcept/authorCode,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?" |
25 | 25 |
Collector,"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}",Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen? |
26 | 26 |
YearCollected,//plotObservation/obsStartDate/_date/year, |
mappings/for_review/VegX-VegBIEN.organisms.csv | ||
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91 | 91 |
//individualName/givenName,"/specimen/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}" |
92 | 92 |
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/specimen/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}" |
93 | 93 |
//individualName/surName,/specimen/collector_id/party/{surname} |
94 |
/simpleUserdefined[name=collectorNumberDwc]/value,//specimen/collectornumber_dwc |
|
94 | 95 |
//party/organizationName,"/specimen/{museum_id/party/organizationname,collectioncode_dwc/_namePart/last}" |
95 | 96 |
//party/organizationName/_name/first,/specimen/{museum_id/party/organizationname/_name/first} |
96 | 97 |
//party/organizationName/_name/last,"/specimen/{museum_id/party/organizationname/_name/last,collectioncode_dwc}" |
mappings/for_review/NYBG-VegBIEN.organisms.csv | ||
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20 | 20 |
Vegetation,"//stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Habitat'. Bob, Nick: keep as user defined or create special element?" |
21 | 21 |
FieldNumber,//specimen/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?" |
22 | 22 |
Collector,"/specimen/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen? |
23 |
CollectorNumber,//specimen/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX" |
|
23 | 24 |
InstitutionCode,/specimen/{museum_id/party/organizationname/_name/first}, |
24 | 25 |
CollectionCode,"/specimen/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name |
25 | 26 |
Sex,"/taxondetermination[rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections" |
Also available in: Unified diff
NYBG mappings: Add mapping for CollectorNumber to specimen.collectornumber_dwc