Revision 5730
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 72 | 72 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then/_alt/2", |
| 73 | 73 |
infraname,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| 74 | 74 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
| 75 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank/_alt/1",
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| 76 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank/_alt/2",
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| 75 |
usdaRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank/_alt/1",
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| 76 |
infrarank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank/_alt/2",
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| 77 | 77 |
authors,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 78 | 78 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 79 | 79 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 50 | 50 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 51 | 51 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| 52 | 52 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
| 53 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 53 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 54 | 54 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 55 | 55 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 56 | 56 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/.NCBI/nodes/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank", |
| 11 | 11 |
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if is higher taxon""]/then", |
| 12 | 12 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 13 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 13 |
rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 14 | 14 |
name_txt,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/else", |
| 15 | 15 |
rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 16 | 16 |
4,,** No join mapping for *4 ** |
| inputs/.NCBI/nodes/test.xml.ref | ||
|---|---|---|
| 38 | 38 |
</taxonepithet> |
| 39 | 39 |
<taxonomicname> |
| 40 | 40 |
<_if name="if is higher taxon"> |
| 41 |
<cond> |
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| 42 |
<_alt> |
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<2>true</2> |
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<1><_is_higher_taxon><rank>$rank</rank></_is_higher_taxon></1> |
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</_alt> |
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| 46 |
</cond> |
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| 41 |
<cond><_has_taxonomic_name><rank>$rank</rank></_has_taxonomic_name></cond> |
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| 47 | 42 |
<else>$name_txt</else> |
| 48 | 43 |
</_if> |
| 49 | 44 |
</taxonomicname> |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 86 | 86 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 87 | 87 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| 88 | 88 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2,Brad: This is the author of the scientificName. |
| 89 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 89 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 90 | 90 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Brad: This is the author of the scientificName. |
| 91 | 91 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 92 | 92 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 79 | 79 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 80 | 80 |
infra_ep_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| 81 | 81 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2,Brad: This is the author of the scientificName. |
| 82 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 82 |
infra_rank_1,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 83 | 83 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Brad: This is the author of the scientificName. |
| 84 | 84 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 85 | 85 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 56 | 56 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 57 | 57 |
Infraspecific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| 58 | 58 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2,Contains author based on matched name |
| 59 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 59 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 60 | 60 |
Taxonomic_status,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonstatus, |
| 61 | 61 |
Name_matched_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Contains author based on matched name |
| 62 | 62 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| inputs/QMOR/Specimen/VegBIEN.csv | ||
|---|---|---|
| 57 | 57 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 58 | 58 |
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2, |
| 59 | 59 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
| 60 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 60 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 61 | 61 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 62 | 62 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 63 | 63 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| mappings/VegCore-VegBIEN.csv | ||
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| 242 | 242 |
forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2", |
| 243 | 243 |
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2", |
| 244 | 244 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/2, |
| 245 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_alt:[2=true]/1/_is_higher_taxon/rank",
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| 245 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/cond/_has_taxonomic_name/rank",
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| 246 | 246 |
taxonName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/3/_if[@name=""if is higher taxon""]/else", |
| 247 | 247 |
taxonomicStatus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonstatus, |
| 248 | 248 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: taxonName->taxonomicname: Use new _has_taxonomic_name() instead of _is_higher_taxon(), because it's more specific to the filtering task for this field