Revision 5738
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 10 | 10 |
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then", |
| 11 | 11 |
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2", |
| 12 | 12 |
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/2",Contains author based on matched name |
| 13 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonepithet",
|
|
| 13 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonomicname",
|
|
| 14 | 14 |
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 15 | 15 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/rank, |
| 16 | 16 |
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/taxonverbatim/verbatimrank, |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 46 | 46 |
</party> |
| 47 | 47 |
</creator_id> |
| 48 | 48 |
<rank>family</rank> |
| 49 |
<taxonepithet>$Accepted_name_family</taxonepithet>
|
|
| 49 |
<taxonomicname>$Accepted_name_family</taxonomicname>
|
|
| 50 | 50 |
</taxonlabel> |
| 51 | 51 |
</matched_label_id> |
| 52 | 52 |
<taxonepithet>$Accepted_name_family</taxonepithet> |
| ... | ... | |
| 203 | 203 |
</path> |
| 204 | 204 |
</_simplifyPath> |
| 205 | 205 |
</VegBIEN> |
| 206 |
Inserted 16 new rows into database |
|
| 206 |
Inserted 23 new rows into database |
|
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 151 | 151 |
acceptedSubspecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet", |
| 152 | 152 |
acceptedSpecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 153 | 153 |
acceptedGenus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet", |
| 154 |
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonepithet",
|
|
| 154 |
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=NCBI,rank=family]/taxonomicname",
|
|
| 155 | 155 |
acceptedFamily,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet", |
| 156 | 156 |
acceptedOrder,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=order]/taxonepithet", |
| 157 | 157 |
acceptedClass,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=class]/taxonepithet", |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 151 | 151 |
acceptedSubspecies,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=subspecies]/taxonepithet, |
| 152 | 152 |
acceptedSpecificEpithet,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=species]/taxonepithet, |
| 153 | 153 |
acceptedGenus,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=genus]/taxonepithet, |
| 154 |
acceptedFamily,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=family]/matched_label_id/taxonlabel/taxonepithet,
|
|
| 154 |
acceptedFamily,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=family]/matched_label_id/taxonlabel/taxonomicname,
|
|
| 155 | 155 |
acceptedFamily,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=family]/taxonepithet, |
| 156 | 156 |
acceptedOrder,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=order]/taxonepithet, |
| 157 | 157 |
acceptedClass,//*_id/taxonlabel/taxonlabel/parent_id/taxonlabel/parent_id[rank=class]/taxonepithet, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: TNRS<->NCBI attachment: Fixed bug where needed to attach accepted family to NCBI using taxonomicname, which is globally unique, rather than taxonepithet, which is only unique within the parent taxon