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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5737 about 12 years Aaron Marcuse-Kubitza inputs/.TNRS/tnrs/: Added Time_submitted column...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5742 about 12 years Aaron Marcuse-Kubitza inputs/test_taxonomic_names/_scrub/public.test_...
  lib 5736 about 12 years Aaron Marcuse-Kubitza csvs.py: RowNumFilter: Use new ColInsertFilter
  mappings 5741 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: TNRS<->NCBI attac...
  schemas 5734 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: Removed no longer used _is...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 4523 over 12 years Aaron Marcuse-Kubitza Added validation/
Makefile 9.87 KB 5679 about 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: Schemas: schemas/rot...
README.TXT 13 KB 5684 about 12 years Aaron Marcuse-Kubitza README.TXT: Documentation: To import and scrub ...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5742 10/23/2012 11:05 AM Aaron Marcuse-Kubitza

inputs/test_taxonomic_names/_scrub/public.test_taxonomic_names.sql, TNRS.sql: Regenerated with schema and mappings changes
5741 10/23/2012 10:49 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: TNRS<->NCBI attachment: Also attach TNRS genus to NCBI backbone. This causes attachment to be made with as many of family and genus as are provided and have an entry in NCBI.
5740 10/23/2012 10:45 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: family -> NCBI backbone: Removed extra path after _if statement's cond/_exists
5739 10/23/2012 10:39 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Instead of connecting the acceptedFamily to the NCBI backbone, connect the family for the TNRS matched taxonlabel. This connects more families and also connects the same set of fields as will be connected for the genus.
5738 10/23/2012 10:01 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: TNRS<->NCBI attachment: Fixed bug where needed to attach accepted family to NCBI using taxonomicname, which is globally unique, rather than taxonepithet, which is only unique within the parent taxon
5737 10/23/2012 09:34 AM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs/: Added Time_submitted column at beginning and populate it in tnrs_db with the time the batch TNRS request was submitted
5736 10/23/2012 09:08 AM Aaron Marcuse-Kubitza

csvs.py: RowNumFilter: Use new ColInsertFilter
5735 10/23/2012 09:08 AM Aaron Marcuse-Kubitza

csvs.py: Added ColInsertFilter
5734 10/23/2012 08:43 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Removed no longer used _is_higher_taxon(). Use _has_taxonomic_name() or _taxonomic_name_is_epithet() instead.
5733 10/23/2012 08:42 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: taxonName->taxonepithet: Use new _taxonomic_name_is_epithet() instead of _is_higher_taxon(), because it's more specific to the filtering task for this field

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