Project

General

Profile

« Previous | Next » 

Revision 5749

schemas/vegbien.sql: analytical_db_view: Fixed bug where needed to take morphospecies from the parsed taxonlabel's taxonverbatim, where it has been parsed out, instead of the datasource's taxonverbatim, which has it as part of the verbatim input name

View differences:

schemas/vegbien.my.sql
1171 1171
--
1172 1172

  
1173 1173
CREATE VIEW analytical_db_view AS
1174
    SELECT datasource.organizationname AS `dataSourceName`, taxonverbatim.family, taxonverbatim.genus, taxonverbatim.species, COALESCE(taxonverbatim.taxonomicname, taxonverbatim.binomial) AS taxon, taxonverbatim.author AS `taxonAuthor`, taxonverbatim.morphospecies AS `taxonMorphospecies`, placepath.country, placepath.stateprovince AS `stateProvince`, placepath.county AS `countyParish`, taxonoccurrence.verbatimcollectorname AS collector, plantobservation.collectionnumber AS `collectionNumber`, array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], CAST(' ' AS text)) AS `identifiedBy`, aggregateoccurrence.collectiondate AS `observationDate`, location.authorlocationcode AS `plotCode`, functions._m2_to_ha(location.area_m2) AS `plotAreaHa`, method.name AS `plotMethod`, locationcoords.latitude_deg AS latitude, locationcoords.longitude_deg AS longitude, location.elevation_m, taxonoccurrence.iscultivated AS `isCultivated`, taxonoccurrence.cultivatedbasis AS `isCultivatedReason`, _fraction_to_percent(aggregateoccurrence.cover_fraction) AS `pctCover`, stemobservation.xposition_m, stemobservation.yposition_m FROM ((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
1174
    SELECT datasource.organizationname AS `dataSourceName`, taxonverbatim.family, taxonverbatim.genus, taxonverbatim.species, COALESCE(taxonverbatim.taxonomicname, taxonverbatim.binomial) AS taxon, taxonverbatim.author AS `taxonAuthor`, parsed_taxonverbatim.morphospecies AS `taxonMorphospecies`, placepath.country, placepath.stateprovince AS `stateProvince`, placepath.county AS `countyParish`, taxonoccurrence.verbatimcollectorname AS collector, plantobservation.collectionnumber AS `collectionNumber`, array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], CAST(' ' AS text)) AS `identifiedBy`, aggregateoccurrence.collectiondate AS `observationDate`, location.authorlocationcode AS `plotCode`, functions._m2_to_ha(location.area_m2) AS `plotAreaHa`, method.name AS `plotMethod`, locationcoords.latitude_deg AS latitude, locationcoords.longitude_deg AS longitude, location.elevation_m, taxonoccurrence.iscultivated AS `isCultivated`, taxonoccurrence.cultivatedbasis AS `isCultivatedReason`, _fraction_to_percent(aggregateoccurrence.cover_fraction) AS `pctCover`, stemobservation.xposition_m, stemobservation.yposition_m FROM ((((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
1175 1175

  
1176 1176

  
1177 1177
--
schemas/vegbien.sql
1653 1653
--
1654 1654

  
1655 1655
CREATE VIEW analytical_db_view AS
1656
    SELECT datasource.organizationname AS "dataSourceName", taxonverbatim.family, taxonverbatim.genus, taxonverbatim.species, COALESCE(taxonverbatim.taxonomicname, taxonverbatim.binomial) AS taxon, taxonverbatim.author AS "taxonAuthor", taxonverbatim.morphospecies AS "taxonMorphospecies", placepath.country, placepath.stateprovince AS "stateProvince", placepath.county AS "countyParish", taxonoccurrence.verbatimcollectorname AS collector, plantobservation.collectionnumber AS "collectionNumber", array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text) AS "identifiedBy", aggregateoccurrence.collectiondate AS "observationDate", location.authorlocationcode AS "plotCode", functions._m2_to_ha(location.area_m2) AS "plotAreaHa", method.name AS "plotMethod", locationcoords.latitude_deg AS latitude, locationcoords.longitude_deg AS longitude, location.elevation_m, taxonoccurrence.iscultivated AS "isCultivated", taxonoccurrence.cultivatedbasis AS "isCultivatedReason", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "pctCover", stemobservation.xposition_m, stemobservation.yposition_m FROM ((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
1656
    SELECT datasource.organizationname AS "dataSourceName", taxonverbatim.family, taxonverbatim.genus, taxonverbatim.species, COALESCE(taxonverbatim.taxonomicname, taxonverbatim.binomial) AS taxon, taxonverbatim.author AS "taxonAuthor", parsed_taxonverbatim.morphospecies AS "taxonMorphospecies", placepath.country, placepath.stateprovince AS "stateProvince", placepath.county AS "countyParish", taxonoccurrence.verbatimcollectorname AS collector, plantobservation.collectionnumber AS "collectionNumber", array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text) AS "identifiedBy", aggregateoccurrence.collectiondate AS "observationDate", location.authorlocationcode AS "plotCode", functions._m2_to_ha(location.area_m2) AS "plotAreaHa", method.name AS "plotMethod", locationcoords.latitude_deg AS latitude, locationcoords.longitude_deg AS longitude, location.elevation_m, taxonoccurrence.iscultivated AS "isCultivated", taxonoccurrence.cultivatedbasis AS "isCultivatedReason", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "pctCover", stemobservation.xposition_m, stemobservation.yposition_m FROM ((((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
1657 1657

  
1658 1658

  
1659 1659
--

Also available in: Unified diff