1
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-- Existing tables
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2
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3
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CREATE TABLE aux_role
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4
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(
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5
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role_id serial NOT NULL,
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6
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rolecode character varying(30) NOT NULL,
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7
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roledescription character varying(200),
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8
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CONSTRAINT aux_role_pkey PRIMARY KEY (role_id )
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9
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);
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10
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11
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CREATE TABLE reference
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12
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(
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13
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reference_id serial NOT NULL,
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14
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shortname character varying(250),
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15
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fulltext text,
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16
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referencetype character varying(250)
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17
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);
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18
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19
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CREATE TABLE party
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20
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(
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21
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party_id serial NOT NULL,
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22
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salutation character varying(20),
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23
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givenname character varying(50),
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24
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middlename character varying(50),
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25
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surname character varying(50),
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26
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organizationname character varying(100)
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27
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);
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28
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29
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CREATE TABLE plantname
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30
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(
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31
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plantname_id serial NOT NULL,
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32
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plantname character varying(255) NOT NULL,
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33
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reference_id integer,
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34
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dateentered timestamp with time zone DEFAULT now(),
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35
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CONSTRAINT plantname_pkey PRIMARY KEY (plantname_id ),
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36
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CONSTRAINT plantname_reference_id FOREIGN KEY (reference_id)
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37
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REFERENCES reference (reference_id) MATCH SIMPLE
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38
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ON UPDATE CASCADE ON DELETE CASCADE
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39
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);
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40
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41
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CREATE TABLE plantconcept
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42
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(
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43
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plantconcept_id serial NOT NULL,
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44
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plantname_id integer NOT NULL,
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45
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reference_id integer NOT NULL,
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46
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plantname character varying(200),
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47
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plantcode character varying(23),
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48
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plantdescription text,
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49
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d_obscount integer,
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50
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d_currentaccepted boolean,
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51
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accessioncode character varying(255),
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52
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CONSTRAINT plantconcept_pkey PRIMARY KEY (plantconcept_id ),
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53
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CONSTRAINT plantconcept_plantname_id FOREIGN KEY (plantname_id)
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54
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REFERENCES plantname (plantname_id) MATCH SIMPLE
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55
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ON UPDATE CASCADE ON DELETE CASCADE,
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56
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CONSTRAINT plantconcept_reference_id FOREIGN KEY (reference_id)
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57
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REFERENCES reference (reference_id) MATCH SIMPLE
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58
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ON UPDATE CASCADE ON DELETE CASCADE
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59
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);
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60
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61
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CREATE TABLE namedplace
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62
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(
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63
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namedplace_id serial NOT NULL,
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64
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placesystem character varying(50),
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65
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placename character varying(100) NOT NULL,
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66
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placedescription text,
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67
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placecode character varying(15),
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68
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owner character varying(100),
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69
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reference_id integer,
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70
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d_obscount integer,
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71
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accessioncode character varying(255),
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72
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CONSTRAINT namedplace_pkey PRIMARY KEY (namedplace_id ),
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73
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CONSTRAINT namedplace_reference_id FOREIGN KEY (reference_id)
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74
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REFERENCES reference (reference_id) MATCH SIMPLE
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75
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ON UPDATE CASCADE ON DELETE CASCADE,
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76
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CONSTRAINT namedplace_keys UNIQUE (placesystem , placename )
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77
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);
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78
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79
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CREATE TABLE locationplace
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80
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(
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81
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locationplace_id serial NOT NULL,
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82
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location_id integer NOT NULL,
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83
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calculated boolean,
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84
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namedplace_id integer NOT NULL,
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85
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CONSTRAINT locationplace_pkey PRIMARY KEY (locationplace_id ),
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86
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CONSTRAINT locationplace_location_id FOREIGN KEY (location_id)
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87
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REFERENCES location (location_id) MATCH SIMPLE
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88
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ON UPDATE CASCADE ON DELETE CASCADE,
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89
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CONSTRAINT locationplace_namedplace_id FOREIGN KEY (namedplace_id)
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90
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REFERENCES namedplace (namedplace_id) MATCH SIMPLE
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91
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ON UPDATE CASCADE ON DELETE CASCADE,
|
92
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CONSTRAINT locationplace_keys UNIQUE (location_id , namedplace_id )
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93
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);
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94
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|
95
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CREATE TABLE project
|
96
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(
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97
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project_id serial NOT NULL,
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98
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projectname character varying(150) NOT NULL,
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99
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projectdescription text,
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100
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startdate timestamp with time zone,
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101
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stopdate timestamp with time zone,
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102
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d_obscount integer,
|
103
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d_lastlocationaddeddate timestamp with time zone,
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104
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accessioncode character varying(255),
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105
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CONSTRAINT project_pkey PRIMARY KEY (project_id ),
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106
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CONSTRAINT project_keys UNIQUE (projectname , startdate , stopdate )
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107
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);
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108
|
|
109
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-- New tables
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110
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|
111
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CREATE TABLE location
|
112
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(
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113
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location_id serial NOT NULL,
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114
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authorlocationcode character varying(30) NOT NULL DEFAULT ''::character varying,
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115
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reference_id integer,
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116
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parent_id integer,
|
117
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reallatitude double precision,
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118
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reallongitude double precision,
|
119
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locationaccuracy double precision,
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120
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confidentialitystatus integer NOT NULL DEFAULT 0,
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121
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confidentialityreason character varying(200),
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122
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latitude double precision,
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123
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longitude double precision,
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124
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"... (truncated) ..." integer,
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125
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accessioncode character varying(255),
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126
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sublocationxposition double precision,
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127
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sublocationyposition double precision,
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128
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namedplace_id integer,
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129
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CONSTRAINT location_pkey PRIMARY KEY (location_id ),
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130
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CONSTRAINT location_namedplace_id FOREIGN KEY (namedplace_id)
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131
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REFERENCES namedplace (namedplace_id) MATCH SIMPLE
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132
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ON UPDATE CASCADE ON DELETE CASCADE,
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133
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CONSTRAINT location_parent_id FOREIGN KEY (parent_id)
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134
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REFERENCES location (location_id) MATCH SIMPLE
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135
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ON UPDATE CASCADE ON DELETE CASCADE,
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136
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CONSTRAINT location_reference_id FOREIGN KEY (reference_id)
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137
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REFERENCES reference (reference_id) MATCH SIMPLE
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138
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ON UPDATE CASCADE ON DELETE CASCADE,
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139
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CONSTRAINT location_keys UNIQUE (reference_id , parent_id , authorlocationcode )
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140
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);
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141
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|
142
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CREATE TABLE locationevent -- VegBank's observation table.
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143
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(
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144
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locationevent_id serial NOT NULL,
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145
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previous_id integer,
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146
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location_id integer NOT NULL,
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147
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project_id integer,
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148
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authoreventcode character varying(30),
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149
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"... (truncated) ..." integer,
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150
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accessioncode character varying(255),
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151
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CONSTRAINT locationevent_pkey PRIMARY KEY (locationevent_id ),
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152
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CONSTRAINT locationevent_location_id FOREIGN KEY (location_id)
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153
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REFERENCES location (location_id) MATCH SIMPLE
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154
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ON UPDATE CASCADE ON DELETE CASCADE,
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155
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CONSTRAINT locationevent_project_id FOREIGN KEY (project_id)
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156
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REFERENCES project (project_id) MATCH SIMPLE
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157
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ON UPDATE CASCADE ON DELETE CASCADE,
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158
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CONSTRAINT locationevent_keys UNIQUE (location_id , project_id , authoreventcode )
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159
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);
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160
|
|
161
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CREATE TABLE taxonoccurrence -- VegBank's taxonobservation table.
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162
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(
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163
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taxonoccurrence_id serial NOT NULL,
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164
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locationevent_id integer NOT NULL,
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165
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authorplantname character varying(255),
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166
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reference_id integer,
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167
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taxoninferencearea double precision,
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168
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emb_taxonoccurrence integer,
|
169
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"... (truncated) ..." integer,
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170
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accessioncode character varying(255),
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171
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CONSTRAINT taxonoccurrence_pkey PRIMARY KEY (taxonoccurrence_id ),
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172
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CONSTRAINT taxonoccurrence_locationevent_id FOREIGN KEY (locationevent_id)
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173
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REFERENCES locationevent (locationevent_id) MATCH SIMPLE
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174
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ON UPDATE CASCADE ON DELETE CASCADE,
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175
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CONSTRAINT taxonoccurrence_reference_id FOREIGN KEY (reference_id)
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176
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REFERENCES reference (reference_id) MATCH SIMPLE
|
177
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ON UPDATE CASCADE ON DELETE CASCADE
|
178
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);
|
179
|
|
180
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CREATE TABLE aggregateoccurrence -- VegBank's taxonimportance table.
|
181
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(
|
182
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aggregateoccurrence_id serial NOT NULL,
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183
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taxonoccurrence_id integer NOT NULL,
|
184
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taxonbin_id integer,
|
185
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cover double precision,
|
186
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basalarea double precision,
|
187
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biomass double precision,
|
188
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inferencearea double precision,
|
189
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stratumbase double precision,
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190
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stratumheight double precision,
|
191
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emb_aggregateoccurrence integer,
|
192
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covercode character varying(10),
|
193
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count integer NOT NULL,
|
194
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accessioncode character varying(255),
|
195
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CONSTRAINT aggregateoccurrence_pkey PRIMARY KEY (aggregateoccurrence_id ),
|
196
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CONSTRAINT aggregateoccurrence_taxonbin_id FOREIGN KEY (taxonbin_id)
|
197
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REFERENCES taxonbin (taxonbin_id) MATCH SIMPLE
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198
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ON UPDATE CASCADE ON DELETE CASCADE,
|
199
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CONSTRAINT aggregateoccurrence_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
200
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REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
201
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ON UPDATE CASCADE ON DELETE CASCADE,
|
202
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CONSTRAINT aggregateoccurrence_keys UNIQUE (taxonoccurrence_id , taxonbin_id )
|
203
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);
|
204
|
|
205
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CREATE TABLE individualplant -- VegBank's stemcount table.
|
206
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(
|
207
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individualplant_id serial NOT NULL,
|
208
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aggregateoccurrence_id integer NOT NULL,
|
209
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overallheight double precision,
|
210
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overallheightaccuracy double precision,
|
211
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emb_individualplant integer,
|
212
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authorplantcode character varying(20),
|
213
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accessioncode character varying(255),
|
214
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stemcount integer,
|
215
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CONSTRAINT individualplant_pkey PRIMARY KEY (individualplant_id ),
|
216
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CONSTRAINT individualplant_aggregateoccurrence_id FOREIGN KEY (aggregateoccurrence_id)
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217
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REFERENCES aggregateoccurrence (aggregateoccurrence_id) MATCH SIMPLE
|
218
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ON UPDATE CASCADE ON DELETE CASCADE,
|
219
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CONSTRAINT individualplant_keys UNIQUE (aggregateoccurrence_id , authorplantcode )
|
220
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);
|
221
|
|
222
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CREATE TABLE stem -- VegBank's stemlocation table.
|
223
|
(
|
224
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stem_id serial NOT NULL,
|
225
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individualplant_id integer NOT NULL,
|
226
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authorstemcode character varying(20),
|
227
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xposition double precision,
|
228
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yposition double precision,
|
229
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health character varying(50),
|
230
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emb_stem integer,
|
231
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diameter double precision,
|
232
|
height double precision,
|
233
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heightaccuracy double precision,
|
234
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age double precision,
|
235
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accessioncode character varying(255),
|
236
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diameteraccuracy double precision,
|
237
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CONSTRAINT stem_pkey PRIMARY KEY (stem_id ),
|
238
|
CONSTRAINT stem_individualplant_id FOREIGN KEY (individualplant_id)
|
239
|
REFERENCES individualplant (individualplant_id) MATCH SIMPLE
|
240
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
241
|
CONSTRAINT stem_keys UNIQUE (individualplant_id , authorstemcode )
|
242
|
);
|
243
|
|
244
|
CREATE TABLE specimen -- A herbarium specimen. Contains Darwin Core specimen data.
|
245
|
(
|
246
|
specimen_id serial NOT NULL,
|
247
|
reference_id integer NOT NULL,
|
248
|
collectioncode_dwc character varying(255),
|
249
|
catalognumber_dwc character varying(255),
|
250
|
collectiondate timestamp with time zone,
|
251
|
collector_id integer,
|
252
|
museum_id integer,
|
253
|
sourceaccessionnumber character varying(100),
|
254
|
accessioncode character varying(255),
|
255
|
taxonoccurrence_id integer,
|
256
|
collectornumber_dwc character varying(255),
|
257
|
CONSTRAINT specimen_pkey PRIMARY KEY (specimen_id ),
|
258
|
CONSTRAINT specimen_collector_id FOREIGN KEY (collector_id)
|
259
|
REFERENCES party (party_id) MATCH SIMPLE
|
260
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
261
|
CONSTRAINT specimen_museum_id FOREIGN KEY (museum_id)
|
262
|
REFERENCES party (party_id) MATCH SIMPLE
|
263
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
264
|
CONSTRAINT specimen_reference_id_fkey FOREIGN KEY (reference_id)
|
265
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
266
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
267
|
CONSTRAINT specimen_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
268
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
269
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
270
|
CONSTRAINT specimen_keys UNIQUE (reference_id , collectioncode_dwc , catalognumber_dwc )
|
271
|
);
|
272
|
|
273
|
CREATE TABLE voucher
|
274
|
(
|
275
|
voucher_id serial NOT NULL,
|
276
|
taxonoccurrence_id integer NOT NULL,
|
277
|
specimen_id integer NOT NULL,
|
278
|
accessioncode character varying(255),
|
279
|
CONSTRAINT voucher_pkey PRIMARY KEY (voucher_id ),
|
280
|
CONSTRAINT voucher_specimen_id FOREIGN KEY (specimen_id)
|
281
|
REFERENCES specimen (specimen_id) MATCH SIMPLE
|
282
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
283
|
CONSTRAINT voucher_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
284
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
285
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
286
|
CONSTRAINT voucher_keys UNIQUE (taxonoccurrence_id , specimen_id )
|
287
|
);
|
288
|
|
289
|
CREATE TABLE taxondetermination -- VegBank's taxoninterpretation table.
|
290
|
(
|
291
|
taxondetermination_id serial NOT NULL,
|
292
|
taxonoccurrence_id integer NOT NULL,
|
293
|
plantconcept_id integer NOT NULL,
|
294
|
party_id integer,
|
295
|
role_id integer NOT NULL,
|
296
|
determinationtype character varying(30),
|
297
|
reference_id integer,
|
298
|
originaldetermination boolean NOT NULL DEFAULT false,
|
299
|
currentdetermination boolean NOT NULL DEFAULT false,
|
300
|
taxonfit character varying(50),
|
301
|
taxonconfidence character varying(50),
|
302
|
grouptype character varying(20),
|
303
|
notes text,
|
304
|
notespublic boolean,
|
305
|
notesmgt boolean,
|
306
|
revisions boolean,
|
307
|
determinationdate timestamp with time zone NOT NULL,
|
308
|
emb_taxondetermination integer,
|
309
|
accessioncode character varying(255),
|
310
|
CONSTRAINT taxondetermination_pkey PRIMARY KEY (taxondetermination_id ),
|
311
|
CONSTRAINT taxondetermination_party_id FOREIGN KEY (party_id)
|
312
|
REFERENCES party (party_id) MATCH SIMPLE
|
313
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
314
|
CONSTRAINT taxondetermination_plantconcept_id FOREIGN KEY (plantconcept_id)
|
315
|
REFERENCES plantconcept (plantconcept_id) MATCH SIMPLE
|
316
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
317
|
CONSTRAINT taxondetermination_reference_id FOREIGN KEY (reference_id)
|
318
|
REFERENCES reference (reference_id) MATCH SIMPLE
|
319
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
320
|
CONSTRAINT taxondetermination_role_id FOREIGN KEY (role_id)
|
321
|
REFERENCES aux_role (role_id) MATCH SIMPLE
|
322
|
ON UPDATE CASCADE ON DELETE CASCADE,
|
323
|
CONSTRAINT taxondetermination_taxonoccurrence_id FOREIGN KEY (taxonoccurrence_id)
|
324
|
REFERENCES taxonoccurrence (taxonoccurrence_id) MATCH SIMPLE
|
325
|
ON UPDATE CASCADE ON DELETE CASCADE
|
326
|
);
|
327
|
|
328
|
CREATE TABLE stratum
|
329
|
(
|
330
|
stratum_id serial NOT NULL,
|
331
|
locationevent_id integer NOT NULL,
|
332
|
stratumtype_id integer NOT NULL,
|
333
|
stratummethod_id integer,
|
334
|
stratumname character varying(30),
|
335
|
stratumheight double precision,
|
336
|
stratumbase double precision,
|
337
|
stratumcover double precision,
|
338
|
stratumdescription character varying(200),
|
339
|
CONSTRAINT stratum_pkey PRIMARY KEY (stratum_id ),
|
340
|
CONSTRAINT stratum_locationevent_id FOREIGN KEY (locationevent_id)
|
341
|
REFERENCES locationevent (locationevent_id) MATCH SIMPLE
|
342
|
ON UPDATE CASCADE ON DELETE CASCADE
|
343
|
);
|
344
|
|
345
|
CREATE TABLE sizeclass -- A range of size measurements used to aggregate organisms.
|
346
|
(
|
347
|
sizeclass_id serial NOT NULL,
|
348
|
mindiameter double precision,
|
349
|
minheight double precision,
|
350
|
maxdiameter double precision,
|
351
|
maxheight double precision,
|
352
|
accessioncode character varying(255),
|
353
|
CONSTRAINT sizeclass_pkey PRIMARY KEY (sizeclass_id )
|
354
|
);
|
355
|
|
356
|
CREATE TABLE taxonbin -- Defines a set of aggregate measurements. Used by aggregateoccurrence to define how measurements were aggregated.
|
357
|
(
|
358
|
taxonbin_id integer NOT NULL,
|
359
|
label character varying(255) NOT NULL,
|
360
|
stratum_id integer,
|
361
|
sizeclass_id integer,
|
362
|
coverindex_id integer,
|
363
|
accessioncode character varying(255),
|
364
|
count integer NOT NULL,
|
365
|
CONSTRAINT taxonbin_pkey PRIMARY KEY (taxonbin_id ),
|
366
|
CONSTRAINT taxonbin_sizeclass_id FOREIGN KEY (sizeclass_id)
|
367
|
REFERENCES sizeclass (sizeclass_id) MATCH SIMPLE
|
368
|
ON UPDATE CASCADE ON DELETE CASCADE
|
369
|
);
|