Revision 5781
Added by Aaron Marcuse-Kubitza about 12 years ago
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CREATE VIEW analytical_db_view AS |
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SELECT datasource.organizationname AS "institutionCode", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.species) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.binomial) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[accepted_taxonverbatim.taxonomicname, parsed_taxonverbatim.morphospecies], ' '::text), ''::text) AS "scientificNameWithMorphospecies", placepath.country, placepath.stateprovince AS "stateProvince", placepath.county, taxonoccurrence.verbatimcollectorname AS "recordedBy", plantobservation.collectionnumber AS "recordNumber", NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", aggregateoccurrence.collectiondate AS "dateCollected", location.sourceaccessioncode AS "plotName", functions._m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", locationcoords.latitude_deg AS "decimalLatitude", locationcoords.longitude_deg AS "decimalLongitude", location.elevation_m AS "elevationInMeters", taxonoccurrence.iscultivated AS cultivated, taxonoccurrence.cultivatedbasis AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", taxonoccurrence.growthform AS "growthForm", stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m" FROM (((((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
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SELECT datasource.organizationname AS "institutionCode", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.species) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.binomial) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[accepted_taxonverbatim.taxonomicname, parsed_taxonverbatim.morphospecies], ' '::text), ''::text) AS "scientificNameWithMorphospecies", placepath.country, placepath.stateprovince AS "stateProvince", placepath.county, taxonoccurrence.verbatimcollectorname AS "recordedBy", plantobservation.collectionnumber AS "recordNumber", NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", aggregateoccurrence.collectiondate AS "dateCollected", location.sourceaccessioncode AS "plotName", functions._m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", locationcoords.latitude_deg AS "decimalLatitude", locationcoords.longitude_deg AS "decimalLongitude", location.elevation_m AS "elevationInMeters", taxonoccurrence.iscultivated AS cultivated, taxonoccurrence.cultivatedbasis AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", taxonoccurrence.growthform AS "growthForm", stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", stemobservation.height_m FROM (((((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
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Also available in: Unified diff
schemas/vegbien.sql: analytical_db_view: Added stemobservation.tag, stemobservation.height_m for use in plot change over time analysis <https://projects.nceas.ucsb.edu/nceas/projects/bien/wiki/Plot_change_over_time_analysis>