Revision 5783
Added by Aaron Marcuse-Kubitza over 12 years ago
| inputs/bien_web/observation/test.xml.ref | ||
|---|---|---|
| 139 | 139 |
<author>$taxonAuthor</author> |
| 140 | 140 |
<family>$family</family> |
| 141 | 141 |
<genus>$genus</genus> |
| 142 |
<species>$species</species>
|
|
| 142 |
<specific_epithet>$species</specific_epithet>
|
|
| 143 | 143 |
<taxonomicname>$taxon</taxonomicname> |
| 144 | 144 |
</taxonverbatim> |
| 145 | 145 |
</taxonverbatim_id> |
| inputs/VegBank/taxonobservation_/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
Forma,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/7/_join_words:[1=""fm. ""]/2", |
| 37 | 37 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 38 | 38 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 39 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 39 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 40 | 40 |
interpretationdate,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 41 | 41 |
taxonfit,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 42 | 42 |
authorplantname,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1, |
| inputs/QMOR/Specimen/test.xml.ref | ||
|---|---|---|
| 244 | 244 |
<binomial>$scientificName</binomial> |
| 245 | 245 |
<family>$family</family> |
| 246 | 246 |
<genus>$genus</genus> |
| 247 |
<species>$specificEpithet</species>
|
|
| 247 |
<specific_epithet>$specificEpithet</specific_epithet>
|
|
| 248 | 248 |
<verbatimrank>$taxonRank</verbatimrank> |
| 249 | 249 |
</taxonverbatim> |
| 250 | 250 |
</taxonverbatim_id> |
| inputs/.TNRS/tnrs/VegBIEN.csv | ||
|---|---|---|
| 47 | 47 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/genus, |
| 48 | 48 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 49 | 49 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 50 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/species,
|
|
| 50 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/specific_epithet,
|
|
| 51 | 51 |
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/verbatimrank, |
| 52 | 52 |
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
| 53 | 53 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Contains family based on matched name |
| ... | ... | |
| 67 | 67 |
Genus_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 68 | 68 |
Name_submitted,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 69 | 69 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/else", |
| 70 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 70 |
Specific_epithet_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 71 | 71 |
Name_matched_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 72 | 72 |
Accepted_name_lsid,,** No join mapping for *Accepted_name_lsid ** |
| 73 | 73 |
Accepted_name_species,,** No join mapping for *Accepted_name_species ** Also contains genus. Omitted because Accepted_name contains more info. |
| inputs/ARIZ/Specimen/VegBIEN.csv | ||
|---|---|---|
| 59 | 59 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 60 | 60 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 61 | 61 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 62 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 62 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 63 | 63 |
ScientificNameAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,Contains the binomial in addition to the authority |
| 64 | 64 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 65 | 65 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| inputs/GBIF/Specimen/VegBIEN.csv | ||
|---|---|---|
| 39 | 39 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 40 | 40 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 41 | 41 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 42 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 42 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 43 | 43 |
ScientificNameOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/1, |
| 44 | 44 |
GBIFFamilyOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| 45 | 45 |
GBIFGenusOriginal,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
| inputs/SpeciesLink/Specimen/VegBIEN.csv | ||
|---|---|---|
| 185 | 185 |
conceptual_darwin_2003_1_0_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 186 | 186 |
dwc_dwcore_Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 187 | 187 |
dwc_terms_genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 188 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 189 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 190 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 188 |
conceptual_darwin_2003_1_0_Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 189 |
dwc_dwcore_SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 190 |
dwc_terms_specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 191 | 191 |
dwc_terms_dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 192 | 192 |
conceptual_darwin_2003_1_0_DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 193 | 193 |
conceptual_darwin_2003_1_0_MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| inputs/bien_web/observation/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 37 | 37 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 38 | 38 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 39 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 39 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 40 | 40 |
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 41 | 41 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 42 | 42 |
country,/location/locationplace/*_id/placepath/country, |
| inputs/MO/Specimen/test.xml.ref | ||
|---|---|---|
| 205 | 205 |
<binomial>$ScientificName</binomial> |
| 206 | 206 |
<family>$family</family> |
| 207 | 207 |
<genus>$genus</genus> |
| 208 |
<species>$species</species>
|
|
| 208 |
<specific_epithet>$species</specific_epithet>
|
|
| 209 | 209 |
</taxonverbatim> |
| 210 | 210 |
</taxonverbatim_id> |
| 211 | 211 |
</taxondetermination> |
| inputs/QMOR/Specimen/VegBIEN.csv | ||
|---|---|---|
| 64 | 64 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 65 | 65 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 66 | 66 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 67 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 67 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 68 | 68 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 69 | 69 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| 70 | 70 |
identificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 51 | 51 |
darwin:ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 52 | 52 |
darwin:Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 53 | 53 |
darwin:Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 54 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 54 |
darwin:Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 55 | 55 |
darwin:DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 56 | 56 |
darwin:MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 57 | 57 |
darwin:YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 33 | 33 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 34 | 34 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 35 | 35 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 36 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 36 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 37 | 37 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 38 | 38 |
Subplot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
| 39 | 39 |
1ha Plot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 116 | 116 |
</taxonlabel_id> |
| 117 | 117 |
<family>$Family</family> |
| 118 | 118 |
<genus>$Genus</genus> |
| 119 |
<species>$Species</species>
|
|
| 119 |
<specific_epithet>$Species</specific_epithet>
|
|
| 120 | 120 |
</taxonverbatim> |
| 121 | 121 |
</taxonverbatim_id> |
| 122 | 122 |
</taxondetermination> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 33 | 33 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 34 | 34 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 35 | 35 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 36 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 36 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 37 | 37 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 38 | 38 |
Subplot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
| 39 | 39 |
1ha Plot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 116 | 116 |
</taxonlabel_id> |
| 117 | 117 |
<family>$Family</family> |
| 118 | 118 |
<genus>$Genus</genus> |
| 119 |
<species>$Species</species>
|
|
| 119 |
<specific_epithet>$Species</specific_epithet>
|
|
| 120 | 120 |
</taxonverbatim> |
| 121 | 121 |
</taxonverbatim_id> |
| 122 | 122 |
</taxondetermination> |
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 56 | 56 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 57 | 57 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 58 | 58 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 59 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 59 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 60 | 60 |
DayIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 61 | 61 |
MonthIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 62 | 62 |
YearIdentified,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 261 | 261 |
<binomial>$ScientificName</binomial> |
| 262 | 262 |
<family>$Family</family> |
| 263 | 263 |
<genus>$Genus</genus> |
| 264 |
<species>$Species</species>
|
|
| 264 |
<specific_epithet>$Species</specific_epithet>
|
|
| 265 | 265 |
</taxonverbatim> |
| 266 | 266 |
</taxonverbatim_id> |
| 267 | 267 |
<determinationdate> |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 52 | 52 |
Species and morphotypes,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial,"Contains less than ""Specie+autor""" |
| 53 | 53 |
Family (revised),/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 54 | 54 |
Genera,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 55 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 55 |
Specific epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 56 | 56 |
Specie+autor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 57 | 57 |
Qualifier,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit, |
| 58 | 58 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1, |
| inputs/Madidi/Organism/test.xml.ref | ||
|---|---|---|
| 174 | 174 |
<binomial>$Species and morphotypes</binomial> |
| 175 | 175 |
<family>$Family (revised)</family> |
| 176 | 176 |
<genus>$Genera</genus> |
| 177 |
<species>$Specific epithet</species>
|
|
| 177 |
<specific_epithet>$Specific epithet</specific_epithet>
|
|
| 178 | 178 |
<taxonomicname>$Specie+autor</taxonomicname> |
| 179 | 179 |
</taxonverbatim> |
| 180 | 180 |
</taxonverbatim_id> |
| inputs/UNCC/Specimen/VegBIEN.csv | ||
|---|---|---|
| 80 | 80 |
SciName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 81 | 81 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 82 | 82 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 83 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 83 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 84 | 84 |
usdaRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/1, |
| 85 | 85 |
infrarank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank/_alt/2, |
| 86 | 86 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join/1, |
| inputs/UNCC/Specimen/test.xml.ref | ||
|---|---|---|
| 219 | 219 |
<binomial>$SciName</binomial> |
| 220 | 220 |
<family>$family</family> |
| 221 | 221 |
<genus>$genus</genus> |
| 222 |
<species>$species</species>
|
|
| 222 |
<specific_epithet>$species</specific_epithet>
|
|
| 223 | 223 |
<verbatimrank> |
| 224 | 224 |
<_alt> |
| 225 | 225 |
<1>$usdaRank</1> |
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 56 | 56 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 57 | 57 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 58 | 58 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 59 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 59 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 60 | 60 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 61 | 61 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 62 | 62 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 219 | 219 |
<author>$scientificNameAuthorship</author> |
| 220 | 220 |
<family>$family</family> |
| 221 | 221 |
<genus>$genus</genus> |
| 222 |
<species>$specificEpithet</species>
|
|
| 222 |
<specific_epithet>$specificEpithet</specific_epithet>
|
|
| 223 | 223 |
<taxonomicname>$scientificName</taxonomicname> |
| 224 | 224 |
<verbatimrank>$taxonRank</verbatimrank> |
| 225 | 225 |
</taxonverbatim> |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 92 | 92 |
specific_authority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Brad: This is the author of the scientificName. |
| 93 | 93 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 94 | 94 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 95 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 95 |
specific_epithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 96 | 96 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 97 | 97 |
cf_aff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 98 | 98 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
| ... | ... | |
| 102 | 102 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
| 103 | 103 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
| 104 | 104 |
orig_family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family,Brad: OMIT |
| 105 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/species,Brad: OMIT
|
|
| 105 |
orig_species,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,Brad: OMIT
|
|
| 106 | 106 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| 107 | 107 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 108 | 108 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/SALVIAS-CSV/Organism/test.xml.ref | ||
|---|---|---|
| 256 | 256 |
<author>$specific_authority</author> |
| 257 | 257 |
<family>$family</family> |
| 258 | 258 |
<genus>$genus</genus> |
| 259 |
<species>$specific_epithet</species>
|
|
| 259 |
<specific_epithet>$specific_epithet</specific_epithet>
|
|
| 260 | 260 |
<verbatimrank>$infra_rank_1</verbatimrank> |
| 261 | 261 |
</taxonverbatim> |
| 262 | 262 |
</taxonverbatim_id> |
| ... | ... | |
| 334 | 334 |
</taxonlabel> |
| 335 | 335 |
</taxonlabel_id> |
| 336 | 336 |
<family>$orig_family</family> |
| 337 |
<species>$orig_species</species>
|
|
| 337 |
<specific_epithet>$orig_species</specific_epithet>
|
|
| 338 | 338 |
</taxonverbatim> |
| 339 | 339 |
</taxonverbatim_id> |
| 340 | 340 |
</taxondetermination> |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 46 | 46 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 47 | 47 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 48 | 48 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 49 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 49 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 50 | 50 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 51 | 51 |
accession_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then","Not globally unique, only (usually) unique within the institution providing the data (""acronym""). Note that there are nevertheless 11,869 rows where an accession_number appears multiple times within the same institution. [1]
|
| 52 | 52 |
|
| inputs/REMIB/Specimen/test.xml.ref | ||
|---|---|---|
| 136 | 136 |
</taxonlabel_id> |
| 137 | 137 |
<family>$family</family> |
| 138 | 138 |
<genus>$genus</genus> |
| 139 |
<species>$specificEpithet</species>
|
|
| 139 |
<specific_epithet>$specificEpithet</specific_epithet>
|
|
| 140 | 140 |
</taxonverbatim> |
| 141 | 141 |
</taxonverbatim_id> |
| 142 | 142 |
</taxondetermination> |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 40 | 40 |
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 41 | 41 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 42 | 42 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 43 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 43 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 44 | 44 |
QuadratID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",Not globally unique; unique only within Site |
| 45 | 45 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
| 46 | 46 |
QuadratID,/location/sourceaccessioncode/_join/2,Not globally unique; unique only within Site |
| inputs/CTFS/StemObservation/test.xml.ref | ||
|---|---|---|
| 127 | 127 |
<author>$SpeciesAuthority</author> |
| 128 | 128 |
<family>$Family</family> |
| 129 | 129 |
<genus>$Genus</genus> |
| 130 |
<species>$SpeciesName</species>
|
|
| 130 |
<specific_epithet>$SpeciesName</specific_epithet>
|
|
| 131 | 131 |
</taxonverbatim> |
| 132 | 132 |
</taxonverbatim_id> |
| 133 | 133 |
</taxondetermination> |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 25 | 25 |
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/4, |
| 26 | 26 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 27 | 27 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 28 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 28 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 29 | 29 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
| 30 | 30 |
Description,,** No join mapping for *Description ** |
| 31 | 31 |
FamilyID,,** No join mapping for *FamilyID ** |
| inputs/CTFS/TaxonOccurrence/test.xml.ref | ||
|---|---|---|
| 87 | 87 |
</taxonlabel_id> |
| 88 | 88 |
<family>$Family</family> |
| 89 | 89 |
<genus>$Genus</genus> |
| 90 |
<species>$SpeciesName</species>
|
|
| 90 |
<specific_epithet>$SpeciesName</specific_epithet>
|
|
| 91 | 91 |
</taxonverbatim> |
| 92 | 92 |
</taxonverbatim_id> |
| 93 | 93 |
</taxondetermination> |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 24 | 24 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/2, |
| 25 | 25 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 26 | 26 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 27 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 27 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 28 | 28 |
County,/location/locationplace/*_id/placepath/county, |
| 29 | 29 |
StateProvince,/location/locationplace/*_id/placepath/stateprovince, |
| 30 | 30 |
PlotCD,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
| inputs/FIA/Organism/test.xml.ref | ||
|---|---|---|
| 125 | 125 |
</taxonlabel> |
| 126 | 126 |
</taxonlabel_id> |
| 127 | 127 |
<genus>$Genus</genus> |
| 128 |
<species>$SpecificEpithet</species>
|
|
| 128 |
<specific_epithet>$SpecificEpithet</specific_epithet>
|
|
| 129 | 129 |
</taxonverbatim> |
| 130 | 130 |
</taxonverbatim_id> |
| 131 | 131 |
</taxondetermination> |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 85 | 85 |
auth,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,Brad: This is the author of the scientificName. |
| 86 | 86 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 87 | 87 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 88 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 88 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 89 | 89 |
infra_rank_1,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 90 | 90 |
cfaff,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/taxonfit,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 91 | 91 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/1,Brad: OMIT |
| ... | ... | |
| 99 | 99 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/2/_join_words/3,Brad: OMIT |
| 100 | 100 |
OrigFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family,Brad: OMIT |
| 101 | 101 |
OrigGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus, |
| 102 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/species,Brad: OMIT
|
|
| 102 |
OrigSpecies,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,Brad: OMIT
|
|
| 103 | 103 |
coll_firstname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/1,Brad: See comment above |
| 104 | 104 |
coll_lastname,/location/locationevent/taxonoccurrence/verbatimcollectorname/_join_words/2,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 105 | 105 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| inputs/SALVIAS/plotObservations/test.xml.ref | ||
|---|---|---|
| 227 | 227 |
<author>$auth</author> |
| 228 | 228 |
<family>$Family</family> |
| 229 | 229 |
<genus>$Genus</genus> |
| 230 |
<species>$Species</species>
|
|
| 230 |
<specific_epithet>$Species</specific_epithet>
|
|
| 231 | 231 |
<verbatimrank>$infra_rank_1</verbatimrank> |
| 232 | 232 |
</taxonverbatim> |
| 233 | 233 |
</taxonverbatim_id> |
| ... | ... | |
| 309 | 309 |
</taxonlabel_id> |
| 310 | 310 |
<family>$OrigFamily</family> |
| 311 | 311 |
<genus>$OrigGenus</genus> |
| 312 |
<species>$OrigSpecies</species>
|
|
| 312 |
<specific_epithet>$OrigSpecies</specific_epithet>
|
|
| 313 | 313 |
</taxonverbatim> |
| 314 | 314 |
</taxonverbatim_id> |
| 315 | 315 |
</taxondetermination> |
| inputs/.TNRS/tnrs/test.xml.ref | ||
|---|---|---|
| 163 | 163 |
<family>$Family_matched</family> |
| 164 | 164 |
<genus>$Genus_matched</genus> |
| 165 | 165 |
<morphospecies>$Unmatched_terms</morphospecies> |
| 166 |
<species>$Specific_epithet_matched</species>
|
|
| 166 |
<specific_epithet>$Specific_epithet_matched</specific_epithet>
|
|
| 167 | 167 |
<verbatimrank>$Infraspecific_rank</verbatimrank> |
| 168 | 168 |
</taxonverbatim> |
| 169 | 169 |
</taxonlabel> |
| ... | ... | |
| 202 | 202 |
<binomial>$Name_matched</binomial> |
| 203 | 203 |
<family>$Name_matched_accepted_family</family> |
| 204 | 204 |
<genus>$Genus_matched</genus> |
| 205 |
<species>$Specific_epithet_matched</species>
|
|
| 205 |
<specific_epithet>$Specific_epithet_matched</specific_epithet>
|
|
| 206 | 206 |
<verbatimrank>$Name_matched_rank</verbatimrank> |
| 207 | 207 |
</taxonverbatim> |
| 208 | 208 |
</taxonverbatim_id> |
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 260 | 260 |
<binomial>$ScientificName</binomial> |
| 261 | 261 |
<family>$Family</family> |
| 262 | 262 |
<genus>$Genus</genus> |
| 263 |
<species>$Species</species>
|
|
| 263 |
<specific_epithet>$Species</specific_epithet>
|
|
| 264 | 264 |
<taxonomicname>$ScientificNameAuthor</taxonomicname> |
| 265 | 265 |
</taxonverbatim> |
| 266 | 266 |
</taxonverbatim_id> |
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 152 | 152 |
<binomial>$ScientificName</binomial> |
| 153 | 153 |
<family>$Family</family> |
| 154 | 154 |
<genus>$Genus</genus> |
| 155 |
<species>$SpecificEpithet</species>
|
|
| 155 |
<specific_epithet>$SpecificEpithet</specific_epithet>
|
|
| 156 | 156 |
</taxonverbatim> |
| 157 | 157 |
</taxonverbatim_id> |
| 158 | 158 |
</taxondetermination> |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 539 | 539 |
<2>$dwc_terms_genus</2> |
| 540 | 540 |
</_alt> |
| 541 | 541 |
</genus> |
| 542 |
<species>
|
|
| 542 |
<specific_epithet>
|
|
| 543 | 543 |
<_alt> |
| 544 | 544 |
<0>$conceptual_darwin_2003_1_0_Species</0> |
| 545 | 545 |
<1>$dwc_dwcore_SpecificEpithet</1> |
| 546 | 546 |
<2>$dwc_terms_specificEpithet</2> |
| 547 | 547 |
</_alt> |
| 548 |
</species>
|
|
| 548 |
</specific_epithet>
|
|
| 549 | 549 |
</taxonverbatim> |
| 550 | 550 |
</taxonverbatim_id> |
| 551 | 551 |
<determinationdate> |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 44 | 44 |
ScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 45 | 45 |
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 46 | 46 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 47 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 47 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 48 | 48 |
Collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 49 | 49 |
CatalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 50 | 50 |
Locality,/location/locationnarrative/_merge/1, |
| inputs/VegBank/taxonobservation_/test.xml.ref | ||
|---|---|---|
| 143 | 143 |
</taxonlabel_id> |
| 144 | 144 |
<family>$Family</family> |
| 145 | 145 |
<genus>$Genus</genus> |
| 146 |
<species>$Species</species>
|
|
| 146 |
<specific_epithet>$Species</specific_epithet>
|
|
| 147 | 147 |
</taxonverbatim> |
| 148 | 148 |
</taxonverbatim_id> |
| 149 | 149 |
<determinationdate><_date><date><_dateRangeStart><value>$interpretationdate</value></_dateRangeStart></date></_date></determinationdate> |
| schemas/vegbien.my.sql | ||
|---|---|---|
| 1097 | 1097 |
author text, |
| 1098 | 1098 |
family text, |
| 1099 | 1099 |
genus text, |
| 1100 |
species text,
|
|
| 1100 |
specific_epithet text,
|
|
| 1101 | 1101 |
morphospecies text, |
| 1102 | 1102 |
description text |
| 1103 | 1103 |
); |
| ... | ... | |
| 1153 | 1153 |
|
| 1154 | 1154 |
|
| 1155 | 1155 |
-- |
| 1156 |
-- Name: COLUMN taxonverbatim.species; Type: COMMENT; Schema: public; Owner: -
|
|
| 1156 |
-- Name: COLUMN taxonverbatim.specific_epithet; Type: COMMENT; Schema: public; Owner: -
|
|
| 1157 | 1157 |
-- |
| 1158 | 1158 |
|
| 1159 | 1159 |
|
| schemas/vegbien.sql | ||
|---|---|---|
| 1578 | 1578 |
author text, |
| 1579 | 1579 |
family text, |
| 1580 | 1580 |
genus text, |
| 1581 |
species text,
|
|
| 1581 |
specific_epithet text,
|
|
| 1582 | 1582 |
morphospecies text, |
| 1583 | 1583 |
description text |
| 1584 | 1584 |
); |
| ... | ... | |
| 1638 | 1638 |
|
| 1639 | 1639 |
|
| 1640 | 1640 |
-- |
| 1641 |
-- Name: COLUMN taxonverbatim.species; Type: COMMENT; Schema: public; Owner: -
|
|
| 1641 |
-- Name: COLUMN taxonverbatim.specific_epithet; Type: COMMENT; Schema: public; Owner: -
|
|
| 1642 | 1642 |
-- |
| 1643 | 1643 |
|
| 1644 |
COMMENT ON COLUMN taxonverbatim.species IS 'The species portion of the taxonomic name. This is a cached field for easy querying; this should also be stored in taxonlabel at the appropriate rank.';
|
|
| 1644 |
COMMENT ON COLUMN taxonverbatim.specific_epithet IS 'The specific epithet portion of the taxonomic name. This is a cached field for easy querying; this should also be stored in taxonlabel at the appropriate rank.';
|
|
| 1645 | 1645 |
|
| 1646 | 1646 |
|
| 1647 | 1647 |
-- |
| ... | ... | |
| 1656 | 1656 |
-- |
| 1657 | 1657 |
|
| 1658 | 1658 |
CREATE VIEW analytical_db_view AS |
| 1659 |
SELECT datasource.organizationname AS "institutionCode", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.species) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.binomial) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[accepted_taxonverbatim.taxonomicname, parsed_taxonverbatim.morphospecies], ' '::text), ''::text) AS "scientificNameWithMorphospecies", placepath.country, placepath.stateprovince AS "stateProvince", placepath.county, taxonoccurrence.verbatimcollectorname AS "recordedBy", plantobservation.collectionnumber AS "recordNumber", NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", aggregateoccurrence.collectiondate AS "dateCollected", location.sourceaccessioncode AS "plotName", functions._m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", locationcoords.latitude_deg AS "decimalLatitude", locationcoords.longitude_deg AS "decimalLongitude", location.elevation_m AS "elevationInMeters", taxonoccurrence.iscultivated AS cultivated, taxonoccurrence.cultivatedbasis AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", taxonoccurrence.growthform AS "growthForm", stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", stemobservation.height_m FROM (((((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
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| 1659 |
SELECT datasource.organizationname AS "institutionCode", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.specific_epithet) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.binomial) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", NULLIF(array_to_string(ARRAY[accepted_taxonverbatim.taxonomicname, parsed_taxonverbatim.morphospecies], ' '::text), ''::text) AS "scientificNameWithMorphospecies", placepath.country, placepath.stateprovince AS "stateProvince", placepath.county, taxonoccurrence.verbatimcollectorname AS "recordedBy", plantobservation.collectionnumber AS "recordNumber", NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", aggregateoccurrence.collectiondate AS "dateCollected", location.sourceaccessioncode AS "plotName", functions._m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", locationcoords.latitude_deg AS "decimalLatitude", locationcoords.longitude_deg AS "decimalLongitude", location.elevation_m AS "elevationInMeters", taxonoccurrence.iscultivated AS cultivated, taxonoccurrence.cultivatedbasis AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", taxonoccurrence.growthform AS "growthForm", stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", stemobservation.height_m FROM (((((((((((((((((((party datasource JOIN location ON ((location.creator_id = datasource.party_id))) LEFT JOIN locationcoords USING (location_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN placepath USING (placepath_id)) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) LEFT JOIN specimenreplicate USING (plantobservation_id)) WHERE (datasource.organizationname IS NOT NULL);
|
|
| 1660 | 1660 |
|
| 1661 | 1661 |
|
| 1662 | 1662 |
-- |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 177 | 177 |
acceptedBinomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/binomial, |
| 178 | 178 |
acceptedFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/family, |
| 179 | 179 |
acceptedGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/genus, |
| 180 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/species,
|
|
| 180 |
acceptedSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/specific_epithet,
|
|
| 181 | 181 |
acceptedScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/taxonomicname, |
| 182 | 182 |
acceptedTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/verbatimrank, |
| 183 | 183 |
parentScientificNameID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_parent_id/parent_id/taxonlabel/sourceaccessioncode, |
| ... | ... | |
| 228 | 228 |
verbatimGenus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/genus, |
| 229 | 229 |
verbatimScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 230 | 230 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 231 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/species,
|
|
| 231 |
verbatimSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/specific_epithet,
|
|
| 232 | 232 |
verbatimTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/verbatimrank, |
| 233 | 233 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/1, |
| 234 | 234 |
binomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_alt/2/_join_words/1/_alt/1, |
| ... | ... | |
| 254 | 254 |
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 255 | 255 |
verbatimScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 256 | 256 |
morphospecies,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/else", |
| 257 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/species,
|
|
| 257 |
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
|
| 258 | 258 |
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 259 | 259 |
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank, |
| 260 | 260 |
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_*/date/_dateRangeStart/value, |
| ... | ... | |
| 308 | 308 |
originalBinomial,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/binomial, |
| 309 | 309 |
originalFamily,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
| 310 | 310 |
originalGenus,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus, |
| 311 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/species,
|
|
| 311 |
originalSpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,
|
|
| 312 | 312 |
originalScientificName,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonomicname, |
| 313 | 313 |
originalTaxonRank,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/verbatimrank, |
| 314 | 314 |
originalIdentificationQualifier,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 177 | 177 |
acceptedBinomial,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/binomial, |
| 178 | 178 |
acceptedFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/family, |
| 179 | 179 |
acceptedGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/genus, |
| 180 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/species,
|
|
| 180 |
acceptedSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/specific_epithet,
|
|
| 181 | 181 |
acceptedScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/taxonomicname, |
| 182 | 182 |
acceptedTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/verbatimrank, |
| 183 | 183 |
parentScientificNameID,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/sourceaccessioncode, |
| ... | ... | |
| 228 | 228 |
verbatimGenus,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/genus, |
| 229 | 229 |
verbatimScientificName,"//taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 230 | 230 |
morphospecies,"//taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 231 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/species,
|
|
| 231 |
verbatimSpecificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/specific_epithet,
|
|
| 232 | 232 |
verbatimTaxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/verbatimrank, |
| 233 | 233 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname, |
| 234 | 234 |
binomial,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname, |
| ... | ... | |
| 254 | 254 |
genus,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/genus, |
| 255 | 255 |
verbatimScientificName,"//taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/cond/_exists", |
| 256 | 256 |
morphospecies,"//taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/else", |
| 257 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/species,
|
|
| 257 |
specificEpithet,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/specific_epithet,
|
|
| 258 | 258 |
scientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/taxonomicname, |
| 259 | 259 |
taxonRank,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/verbatimrank, |
| 260 | 260 |
dateIdentified,//taxonoccurrence/taxondetermination[]/determinationdate/_*/date, |
| ... | ... | |
| 308 | 308 |
originalBinomial,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/binomial, |
| 309 | 309 |
originalFamily,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
| 310 | 310 |
originalGenus,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus, |
| 311 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/species,
|
|
| 311 |
originalSpecificEpithet,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/specific_epithet,
|
|
| 312 | 312 |
originalScientificName,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/taxonomicname, |
| 313 | 313 |
originalTaxonRank,//taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/verbatimrank, |
| 314 | 314 |
originalIdentificationQualifier,//taxonoccurrence/taxondetermination[isoriginal=true]/taxonfit, |
Also available in: Unified diff
schemas/vegbien.sql: taxonverbatim: Renamed species to specific_epithet to avoid confusion with the scientific meaning of species (genus+specificEpithet), since this field contains just the specific epithet