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Revision 5803

Added by Aaron Marcuse-Kubitza over 12 years ago

inputs/.TNRS/tnrs/map.csv: Added _nullIf filter to remove "Unknown" values for Accepted_name_family

View differences:

inputs/.TNRS/tnrs/map.csv
35 35 
Accepted_name_rank,acceptedTaxonRank,,
36 36 
Accepted_name_url,*Accepted_name_url,,
37 37 
Accepted_name_species,*Accepted_name_species,,Also contains genus. Omitted because Accepted_name contains more info.
38 
Accepted_name_family,acceptedFamily,,
38 
Accepted_name_family,acceptedFamily,/_nullIf:[null=Unknown]/value,
39 39 
Selected,*Selected,,
40 40 
Source,*Source,,
41 41 
Warnings,*Warnings,,
inputs/.TNRS/tnrs/VegBIEN.csv
10 10 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
11 11 
Infraspecific_epithet_matched,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
12 12 
Name_matched_author,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2",Contains author based on matched name
13 
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
13 
Accepted_name_family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet/_nullIf:[null=Unknown]/value",
14 14 
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/rank,
15 15 
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/parent_id/taxonlabel/taxonverbatim/verbatimrank,
16 16 
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/rank,
17 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname/_join_words/1/_taxon_family_require_std/family,
17 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname/_join_words/1/_taxon_family_require_std/family/_nullIf:[null=Unknown]/value,
18 18 
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1,
19 19 
Accepted_name_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
20 20 
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/2,
21 21 
Accepted_name_author,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/author,
22 22 
Accepted_name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/binomial,
23 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/family,
23 
Accepted_name_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/family/_nullIf:[null=Unknown]/value,
24 24 
Accepted_name_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_taxonlabel_set_matched_label_id/matched_label_id/taxonlabel/taxonverbatim/verbatimrank,
25 25 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
26 26 
Name_matched_rank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank",
inputs/.TNRS/tnrs/test.xml.ref
37 37 
                                                                                                                <parent_id>
38 38 
                                                                                                                    <taxonlabel>
39 39 
                                                                                                                        <rank>family</rank>
40 
                                                                                                                        <taxonepithet>$Accepted_name_family</taxonepithet>
40 
                                                                                                                        <taxonepithet>
41 
                                                                                                                            <_nullIf>
42 
                                                                                                                                <null>Unknown</null>
43 
                                                                                                                                <value>$Accepted_name_family</value>
44 
                                                                                                                            </_nullIf>
45 
                                                                                                                        </taxonepithet>
41 46 
                                                                                                                    </taxonlabel>
42 47 
                                                                                                                </parent_id>
43 48 
                                                                                                            </taxonlabel>
......
59 64 
                                                        <rank>$Accepted_name_rank</rank>
60 65 
                                                        <taxonomicname>
61 66 
                                                            <_join_words>
62 
                                                                <1><_taxon_family_require_std><family>$Accepted_name_family</family></_taxon_family_require_std></1>
67 
                                                                <1>
68 
                                                                    <_taxon_family_require_std>
69 
                                                                        <family>
70 
                                                                            <_nullIf>
71 
                                                                                <null>Unknown</null>
72 
                                                                                <value>$Accepted_name_family</value>
73 
                                                                            </_nullIf>
74 
                                                                        </family>
75 
                                                                    </_taxon_family_require_std>
76 
                                                                </1>
63 77 
                                                                <2>
64 78 
                                                                    <_join_words>
65 79 
                                                                        <1>$Accepted_name</1>
......
71 85 
                                                        <taxonverbatim>
72 86 
                                                            <author>$Accepted_name_author</author>
73 87 
                                                            <binomial>$Accepted_name</binomial>
74 
                                                            <family>$Accepted_name_family</family>
88 
                                                            <family>
89 
                                                                <_nullIf>
90 
                                                                    <null>Unknown</null>
91 
                                                                    <value>$Accepted_name_family</value>
92 
                                                                </_nullIf>
93 
                                                            </family>
75 94 
                                                            <verbatimrank>$Accepted_name_rank</verbatimrank>
76 95 
                                                        </taxonverbatim>
77 96 
                                                    </taxonlabel>
inputs/.TNRS/tnrs/new_terms.csv
26 26 
Accepted_name,acceptedBinomial,,
27 27 
Accepted_name_author,acceptedScientificNameAuthorship,,
28 28 
Accepted_name_rank,acceptedTaxonRank,,
29 
Accepted_name_family,acceptedFamily,,
29 
Accepted_name_family,acceptedFamily,/_nullIf:[null=Unknown]/value,

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