Revision 5861
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/XAL/Specimen/VegBIEN.csv | ||
|---|---|---|
| 5 | 5 |
darwin:CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 6 | 6 |
darwin:MaximumElevation,/location/elevation_m/_alt/2/_avg/max, |
| 7 | 7 |
darwin:MinimumElevation,/location/elevation_m/_alt/2/_avg/min, |
| 8 |
darwin:CoordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2, |
|
| 9 |
darwin:Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 10 |
darwin:Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 11 | 8 |
darwin:DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 12 | 9 |
darwin:MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 13 | 10 |
darwin:YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 60 | 57 |
darwin:MaximumDepth,/location/locationevent/waterdepth_m/_avg/max, |
| 61 | 58 |
darwin:MinimumDepth,/location/locationevent/waterdepth_m/_avg/min, |
| 62 | 59 |
darwin:Locality,/location/locationnarrative/_merge/1, |
| 60 |
darwin:CoordinatePrecision,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_deg/_noCV/value/_alt/2, |
|
| 61 |
darwin:Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 62 |
darwin:Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 63 | 63 |
darwin:ContinentOcean,/location/locationplace/*_id/place/continent, |
| 64 | 64 |
darwin:Country,/location/locationplace/*_id/place/country, |
| 65 | 65 |
darwin:County,/location/locationplace/*_id/place/county, |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
Id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| 5 | 5 |
1ha Plot Number,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
| 6 | 6 |
Subplot Number,/location/authorlocationcode, |
| 7 |
Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 8 |
Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 9 | 7 |
Method,/location/locationevent/*_id/method/name, |
| 10 | 8 |
Site Name,/location/locationevent/*_id/project/projectname, |
| 11 | 9 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
| ... | ... | |
| 35 | 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 36 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 37 | 35 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 36 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 37 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 38 | 38 |
Subplot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
| 39 | 39 |
1ha Plot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
| 40 | 40 |
Subplot Number,/location/sourceaccessioncode/_join/2, |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 6 | 6 |
<location> |
| 7 | 7 |
<parent_id><location><authorlocationcode>$1ha Plot Number</authorlocationcode></location></parent_id> |
| 8 | 8 |
<authorlocationcode>$Subplot Number</authorlocationcode> |
| 9 |
<locationcoords> |
|
| 10 |
<latitude_deg> |
|
| 11 |
<_nullIf> |
|
| 12 |
<null>0</null> |
|
| 13 |
<type>float</type> |
|
| 14 |
<value>$Latitude</value> |
|
| 15 |
</_nullIf> |
|
| 16 |
</latitude_deg> |
|
| 17 |
<longitude_deg> |
|
| 18 |
<_nullIf> |
|
| 19 |
<null>0</null> |
|
| 20 |
<type>float</type> |
|
| 21 |
<value>$Longitude</value> |
|
| 22 |
</_nullIf> |
|
| 23 |
</longitude_deg> |
|
| 24 |
</locationcoords> |
|
| 25 | 9 |
<locationevent> |
| 26 | 10 |
<method_id><method><name>$Method</name></method></method_id> |
| 27 | 11 |
<project_id><project><projectname>$Site Name</projectname></project></project_id> |
| ... | ... | |
| 131 | 115 |
<verbatimcollectorname>$Names of Collectors</verbatimcollectorname> |
| 132 | 116 |
</taxonoccurrence> |
| 133 | 117 |
</locationevent> |
| 118 |
<locationplace> |
|
| 119 |
<place_id> |
|
| 120 |
<place> |
|
| 121 |
<coordinates_id> |
|
| 122 |
<coordinates> |
|
| 123 |
<latitude_deg> |
|
| 124 |
<_nullIf> |
|
| 125 |
<null>0</null> |
|
| 126 |
<type>float</type> |
|
| 127 |
<value>$Latitude</value> |
|
| 128 |
</_nullIf> |
|
| 129 |
</latitude_deg> |
|
| 130 |
<longitude_deg> |
|
| 131 |
<_nullIf> |
|
| 132 |
<null>0</null> |
|
| 133 |
<type>float</type> |
|
| 134 |
<value>$Longitude</value> |
|
| 135 |
</_nullIf> |
|
| 136 |
</longitude_deg> |
|
| 137 |
</coordinates> |
|
| 138 |
</coordinates_id> |
|
| 139 |
</place> |
|
| 140 |
</place_id> |
|
| 141 |
</locationplace> |
|
| 134 | 142 |
<sourceaccessioncode> |
| 135 | 143 |
<_join> |
| 136 | 144 |
<1>$1ha Plot Number</1> |
| ... | ... | |
| 141 | 149 |
</path> |
| 142 | 150 |
</_simplifyPath> |
| 143 | 151 |
</VegBIEN> |
| 144 |
Inserted 34 new rows into database |
|
| 152 |
Inserted 32 new rows into database |
|
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
Id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1", |
| 5 | 5 |
1ha Plot Number,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
| 6 | 6 |
Subplot Number,/location/authorlocationcode, |
| 7 |
Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 8 |
Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 9 | 7 |
Spatial Method,/location/locationevent/*_id/method/name, |
| 10 | 8 |
Site Name,/location/locationevent/*_id/project/projectname, |
| 11 | 9 |
Subplot Number,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
| ... | ... | |
| 35 | 33 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 36 | 34 |
Species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 37 | 35 |
Names of Collectors,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 36 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 37 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 38 | 38 |
Subplot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
| 39 | 39 |
1ha Plot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
| 40 | 40 |
Subplot Number,/location/sourceaccessioncode/_join/2, |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 6 | 6 |
<location> |
| 7 | 7 |
<parent_id><location><authorlocationcode>$1ha Plot Number</authorlocationcode></location></parent_id> |
| 8 | 8 |
<authorlocationcode>$Subplot Number</authorlocationcode> |
| 9 |
<locationcoords> |
|
| 10 |
<latitude_deg> |
|
| 11 |
<_nullIf> |
|
| 12 |
<null>0</null> |
|
| 13 |
<type>float</type> |
|
| 14 |
<value>$Latitude</value> |
|
| 15 |
</_nullIf> |
|
| 16 |
</latitude_deg> |
|
| 17 |
<longitude_deg> |
|
| 18 |
<_nullIf> |
|
| 19 |
<null>0</null> |
|
| 20 |
<type>float</type> |
|
| 21 |
<value>$Longitude</value> |
|
| 22 |
</_nullIf> |
|
| 23 |
</longitude_deg> |
|
| 24 |
</locationcoords> |
|
| 25 | 9 |
<locationevent> |
| 26 | 10 |
<method_id><method><name>$Spatial Method</name></method></method_id> |
| 27 | 11 |
<project_id><project><projectname>$Site Name</projectname></project></project_id> |
| ... | ... | |
| 131 | 115 |
<verbatimcollectorname>$Names of Collectors</verbatimcollectorname> |
| 132 | 116 |
</taxonoccurrence> |
| 133 | 117 |
</locationevent> |
| 118 |
<locationplace> |
|
| 119 |
<place_id> |
|
| 120 |
<place> |
|
| 121 |
<coordinates_id> |
|
| 122 |
<coordinates> |
|
| 123 |
<latitude_deg> |
|
| 124 |
<_nullIf> |
|
| 125 |
<null>0</null> |
|
| 126 |
<type>float</type> |
|
| 127 |
<value>$Latitude</value> |
|
| 128 |
</_nullIf> |
|
| 129 |
</latitude_deg> |
|
| 130 |
<longitude_deg> |
|
| 131 |
<_nullIf> |
|
| 132 |
<null>0</null> |
|
| 133 |
<type>float</type> |
|
| 134 |
<value>$Longitude</value> |
|
| 135 |
</_nullIf> |
|
| 136 |
</longitude_deg> |
|
| 137 |
</coordinates> |
|
| 138 |
</coordinates_id> |
|
| 139 |
</place> |
|
| 140 |
</place_id> |
|
| 141 |
</locationplace> |
|
| 134 | 142 |
<sourceaccessioncode> |
| 135 | 143 |
<_join> |
| 136 | 144 |
<1>$1ha Plot Number</1> |
| ... | ... | |
| 141 | 149 |
</path> |
| 142 | 150 |
</_simplifyPath> |
| 143 | 151 |
</VegBIEN> |
| 144 |
Inserted 31 new rows into database |
|
| 152 |
Inserted 30 new rows into database |
|
| inputs/TEAM/TEAM_Sites/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
TEAM,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
Name,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
| 3 | 3 |
Name,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
| 4 |
Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 5 |
Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 6 | 4 |
Site Name,/location/locationevent/*_id/project/projectname, |
| 7 | 5 |
Name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode", |
| 8 | 6 |
CollectionDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value, |
| 9 | 7 |
CollectionDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value, |
| 10 | 8 |
Name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 9 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 10 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 11 | 11 |
Name,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
| 12 | 12 |
1ha Plot Coordinate,,** No join mapping for *1ha Plot Coordinate ** |
| inputs/TEAM/TEAM_Sites/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<path> |
| 6 | 6 |
<location> |
| 7 | 7 |
<authorlocationcode>$Name</authorlocationcode> |
| 8 |
<locationcoords> |
|
| 9 |
<latitude_deg> |
|
| 10 |
<_nullIf> |
|
| 11 |
<null>0</null> |
|
| 12 |
<type>float</type> |
|
| 13 |
<value>$Latitude</value> |
|
| 14 |
</_nullIf> |
|
| 15 |
</latitude_deg> |
|
| 16 |
<longitude_deg> |
|
| 17 |
<_nullIf> |
|
| 18 |
<null>0</null> |
|
| 19 |
<type>float</type> |
|
| 20 |
<value>$Longitude</value> |
|
| 21 |
</_nullIf> |
|
| 22 |
</longitude_deg> |
|
| 23 |
</locationcoords> |
|
| 24 | 8 |
<locationevent> |
| 25 | 9 |
<project_id><project><projectname>$Site Name</projectname></project></project_id> |
| 26 | 10 |
<obsenddate><_date><date><_dateRangeEnd><value>$CollectionDate</value></_dateRangeEnd></date></_date></obsenddate> |
| 27 | 11 |
<obsstartdate><_date><date><_dateRangeStart><value>$CollectionDate</value></_dateRangeStart></date></_date></obsstartdate> |
| 28 | 12 |
</locationevent> |
| 13 |
<locationplace> |
|
| 14 |
<place_id> |
|
| 15 |
<place> |
|
| 16 |
<coordinates_id> |
|
| 17 |
<coordinates> |
|
| 18 |
<latitude_deg> |
|
| 19 |
<_nullIf> |
|
| 20 |
<null>0</null> |
|
| 21 |
<type>float</type> |
|
| 22 |
<value>$Latitude</value> |
|
| 23 |
</_nullIf> |
|
| 24 |
</latitude_deg> |
|
| 25 |
<longitude_deg> |
|
| 26 |
<_nullIf> |
|
| 27 |
<null>0</null> |
|
| 28 |
<type>float</type> |
|
| 29 |
<value>$Longitude</value> |
|
| 30 |
</_nullIf> |
|
| 31 |
</longitude_deg> |
|
| 32 |
</coordinates> |
|
| 33 |
</coordinates_id> |
|
| 34 |
</place> |
|
| 35 |
</place_id> |
|
| 36 |
</locationplace> |
|
| 29 | 37 |
</location> |
| 30 | 38 |
</path> |
| 31 | 39 |
</_simplifyPath> |
| 32 | 40 |
</VegBIEN> |
| 33 |
Inserted 8 new rows into database |
|
| 41 |
Inserted 12 new rows into database |
|
| inputs/NY/Specimen/VegBIEN.csv | ||
|---|---|---|
| 6 | 6 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 7 | 7 |
MaximumElevation,/location/elevation_m/_alt/2/_avg/max, |
| 8 | 8 |
MinimumElevation,/location/elevation_m/_alt/2/_avg/min/_nullIf:[null=.]/value, |
| 9 |
CoordinatePrecision,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/2, |
|
| 10 |
BoundingBox,/location/locationcoords/footprintgeometry_dwc, |
|
| 11 |
Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 12 |
Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 13 | 9 |
DayCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 14 | 10 |
MonthCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 15 | 11 |
YearCollected,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 68 | 64 |
Substrate,"/location/locationnarrative/_merge/1/_join/2/_label[label=""substrate""]/value", |
| 69 | 65 |
Vegetation,"/location/locationnarrative/_merge/1/_join/3/_label[label=""vegetation""]/value", |
| 70 | 66 |
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 67 |
CoordinatePrecision,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_deg/_noCV/value/_alt/2, |
|
| 68 |
BoundingBox,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc, |
|
| 69 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 70 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 71 | 71 |
ContinentOcean,/location/locationplace/*_id/place/continent, |
| 72 | 72 |
Country,/location/locationplace/*_id/place/country, |
| 73 | 73 |
County,/location/locationplace/*_id/place/county, |
| inputs/NY/Specimen/test.xml.ref | ||
|---|---|---|
| 27 | 27 |
</min> |
| 28 | 28 |
</_avg> |
| 29 | 29 |
</elevation_m> |
| 30 |
<locationcoords> |
|
| 31 |
<coordsaccuracy_deg><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy_deg> |
|
| 32 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 33 |
<latitude_deg> |
|
| 34 |
<_nullIf> |
|
| 35 |
<null>0</null> |
|
| 36 |
<type>float</type> |
|
| 37 |
<value>$Latitude</value> |
|
| 38 |
</_nullIf> |
|
| 39 |
</latitude_deg> |
|
| 40 |
<longitude_deg> |
|
| 41 |
<_nullIf> |
|
| 42 |
<null>0</null> |
|
| 43 |
<type>float</type> |
|
| 44 |
<value>$Longitude</value> |
|
| 45 |
</_nullIf> |
|
| 46 |
</longitude_deg> |
|
| 47 |
</locationcoords> |
|
| 48 | 30 |
<locationevent> |
| 49 | 31 |
<taxonoccurrence> |
| 50 | 32 |
<aggregateoccurrence> |
| ... | ... | |
| 337 | 319 |
<locationplace> |
| 338 | 320 |
<place_id> |
| 339 | 321 |
<place> |
| 322 |
<coordinates_id> |
|
| 323 |
<coordinates> |
|
| 324 |
<coordsaccuracy_deg><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy_deg> |
|
| 325 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 326 |
<latitude_deg> |
|
| 327 |
<_nullIf> |
|
| 328 |
<null>0</null> |
|
| 329 |
<type>float</type> |
|
| 330 |
<value>$Latitude</value> |
|
| 331 |
</_nullIf> |
|
| 332 |
</latitude_deg> |
|
| 333 |
<longitude_deg> |
|
| 334 |
<_nullIf> |
|
| 335 |
<null>0</null> |
|
| 336 |
<type>float</type> |
|
| 337 |
<value>$Longitude</value> |
|
| 338 |
</_nullIf> |
|
| 339 |
</longitude_deg> |
|
| 340 |
</coordinates> |
|
| 341 |
</coordinates_id> |
|
| 340 | 342 |
<continent>$ContinentOcean</continent> |
| 341 | 343 |
<country>$Country</country> |
| 342 | 344 |
<county>$County</county> |
| inputs/Madidi/Plot/VegBIEN.csv | ||
|---|---|---|
| 57 | 57 |
----- |
| 58 | 58 |
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>" |
| 59 | 59 |
Topographical situation,/location/landform, |
| 60 |
Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 61 |
Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 62 |
Latitude (DMS),/location/locationcoords/verbatimlatitude, |
|
| 63 |
Longitude (DMS),/location/locationcoords/verbatimlongitude, |
|
| 64 | 60 |
Expedition name,/location/locationevent/*_id/project/projectname,Consistent (globally unique) between PPM and PT data |
| 65 | 61 |
Expedition number,/location/locationevent/*_id/project/sourceaccessioncode,Consistent (globally unique) between PPM and PT data |
| 66 | 62 |
Inventory name,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode", |
| ... | ... | |
| 88 | 84 |
Inventory code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 89 | 85 |
Inventory name,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 90 | 86 |
Locality,/location/locationnarrative/_merge/1, |
| 87 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 88 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 89 |
Latitude (DMS),/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude, |
|
| 90 |
Longitude (DMS),/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude, |
|
| 91 | 91 |
Observaciones,/location/notespublic, |
| 92 | 92 |
Direction,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/1,Part files provide either this field or Orientación |
| 93 | 93 |
Orientación/exposicion,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/2,Part files provide either this field or Direction |
| inputs/Madidi/Plot/test.xml.ref | ||
|---|---|---|
| 25 | 25 |
</_range> |
| 26 | 26 |
</elevationrange_m> |
| 27 | 27 |
<landform>$Topographical situation</landform> |
| 28 |
<locationcoords> |
|
| 29 |
<latitude_deg> |
|
| 30 |
<_nullIf> |
|
| 31 |
<null>0</null> |
|
| 32 |
<type>float</type> |
|
| 33 |
<value>$Latitude</value> |
|
| 34 |
</_nullIf> |
|
| 35 |
</latitude_deg> |
|
| 36 |
<longitude_deg> |
|
| 37 |
<_nullIf> |
|
| 38 |
<null>0</null> |
|
| 39 |
<type>float</type> |
|
| 40 |
<value>$Longitude</value> |
|
| 41 |
</_nullIf> |
|
| 42 |
</longitude_deg> |
|
| 43 |
<verbatimlatitude>$Latitude (DMS)</verbatimlatitude> |
|
| 44 |
<verbatimlongitude>$Longitude (DMS)</verbatimlongitude> |
|
| 45 |
</locationcoords> |
|
| 46 | 28 |
<locationevent> |
| 47 | 29 |
<project_id> |
| 48 | 30 |
<project> |
| ... | ... | |
| 82 | 64 |
</soilobs> |
| 83 | 65 |
</locationevent> |
| 84 | 66 |
<locationnarrative>$Locality</locationnarrative> |
| 67 |
<locationplace> |
|
| 68 |
<place_id> |
|
| 69 |
<place> |
|
| 70 |
<coordinates_id> |
|
| 71 |
<coordinates> |
|
| 72 |
<latitude_deg> |
|
| 73 |
<_nullIf> |
|
| 74 |
<null>0</null> |
|
| 75 |
<type>float</type> |
|
| 76 |
<value>$Latitude</value> |
|
| 77 |
</_nullIf> |
|
| 78 |
</latitude_deg> |
|
| 79 |
<longitude_deg> |
|
| 80 |
<_nullIf> |
|
| 81 |
<null>0</null> |
|
| 82 |
<type>float</type> |
|
| 83 |
<value>$Longitude</value> |
|
| 84 |
</_nullIf> |
|
| 85 |
</longitude_deg> |
|
| 86 |
<verbatimlatitude>$Latitude (DMS)</verbatimlatitude> |
|
| 87 |
<verbatimlongitude>$Longitude (DMS)</verbatimlongitude> |
|
| 88 |
</coordinates> |
|
| 89 |
</coordinates_id> |
|
| 90 |
</place> |
|
| 91 |
</place_id> |
|
| 92 |
</locationplace> |
|
| 85 | 93 |
<notespublic>$Observaciones</notespublic> |
| 86 | 94 |
<slopeaspect_deg> |
| 87 | 95 |
<_compass> |
| ... | ... | |
| 99 | 107 |
</path> |
| 100 | 108 |
</_simplifyPath> |
| 101 | 109 |
</VegBIEN> |
| 102 |
Inserted 19 new rows into database |
|
| 110 |
Inserted 23 new rows into database |
|
| inputs/ACAD/Specimen/VegBIEN.csv | ||
|---|---|---|
| 6 | 6 |
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2", |
| 7 | 7 |
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 8 | 8 |
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
| 9 |
decimalLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 10 |
decimalLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 11 | 9 |
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value, |
| 12 | 10 |
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value, |
| 13 | 11 |
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber, |
| ... | ... | |
| 64 | 62 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 65 | 63 |
locality,/location/locationnarrative/_merge/1, |
| 66 | 64 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 65 |
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 66 |
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 67 | 67 |
continent,/location/locationplace/*_id/place/continent, |
| 68 | 68 |
country,/location/locationplace/*_id/place/country, |
| 69 | 69 |
county,/location/locationplace/*_id/place/county, |
| inputs/ACAD/Specimen/test.xml.ref | ||
|---|---|---|
| 28 | 28 |
<value>$verbatimElevation</value> |
| 29 | 29 |
</_units> |
| 30 | 30 |
</elevation_m> |
| 31 |
<locationcoords> |
|
| 32 |
<latitude_deg> |
|
| 33 |
<_nullIf> |
|
| 34 |
<null>0</null> |
|
| 35 |
<type>float</type> |
|
| 36 |
<value>$decimalLatitude</value> |
|
| 37 |
</_nullIf> |
|
| 38 |
</latitude_deg> |
|
| 39 |
<longitude_deg> |
|
| 40 |
<_nullIf> |
|
| 41 |
<null>0</null> |
|
| 42 |
<type>float</type> |
|
| 43 |
<value>$decimalLongitude</value> |
|
| 44 |
</_nullIf> |
|
| 45 |
</longitude_deg> |
|
| 46 |
</locationcoords> |
|
| 47 | 31 |
<locationevent> |
| 48 | 32 |
<obsenddate><_date><date><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></date></_date></obsenddate> |
| 49 | 33 |
<obsstartdate><_date><date><_dateRangeStart><value>$eventDate</value></_dateRangeStart></date></_date></obsstartdate> |
| ... | ... | |
| 251 | 235 |
<locationplace> |
| 252 | 236 |
<place_id> |
| 253 | 237 |
<place> |
| 238 |
<coordinates_id> |
|
| 239 |
<coordinates> |
|
| 240 |
<latitude_deg> |
|
| 241 |
<_nullIf> |
|
| 242 |
<null>0</null> |
|
| 243 |
<type>float</type> |
|
| 244 |
<value>$decimalLatitude</value> |
|
| 245 |
</_nullIf> |
|
| 246 |
</latitude_deg> |
|
| 247 |
<longitude_deg> |
|
| 248 |
<_nullIf> |
|
| 249 |
<null>0</null> |
|
| 250 |
<type>float</type> |
|
| 251 |
<value>$decimalLongitude</value> |
|
| 252 |
</_nullIf> |
|
| 253 |
</longitude_deg> |
|
| 254 |
</coordinates> |
|
| 255 |
</coordinates_id> |
|
| 254 | 256 |
<continent>$continent</continent> |
| 255 | 257 |
<country>$country</country> |
| 256 | 258 |
<county>$county</county> |
| inputs/SALVIAS-CSV/Plot/VegBIEN.csv | ||
|---|---|---|
| 8 | 8 |
elev_m,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick. |
| 9 | 9 |
elev_max_m,/location/elevation_m/_alt/2/_avg/max, |
| 10 | 10 |
elev_min_m,/location/elevation_m/_alt/2/_avg/min, |
| 11 |
lat_decimal,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 12 |
long_decimal,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 13 | 11 |
plot_methodology,/location/locationevent/*_id/method/name, |
| 14 | 12 |
project,/location/locationevent/*_id/project/projectname, |
| 15 | 13 |
plot_code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
| ... | ... | |
| 40 | 38 |
plot_code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
| 41 | 39 |
temp_c,/location/locationevent/temperature_c, |
| 42 | 40 |
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX" |
| 41 |
lat_decimal,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 42 |
long_decimal,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 43 | 43 |
major_geo,/location/locationplace/*_id/place/continent, |
| 44 | 44 |
country,/location/locationplace/*_id/place/country, |
| 45 | 45 |
pol2,/location/locationplace/*_id/place/county,Brad: No pol2=countyParish |
| inputs/SALVIAS-CSV/Plot/test.xml.ref | ||
|---|---|---|
| 18 | 18 |
</2> |
| 19 | 19 |
</_alt> |
| 20 | 20 |
</elevation_m> |
| 21 |
<locationcoords> |
|
| 22 |
<latitude_deg> |
|
| 23 |
<_nullIf> |
|
| 24 |
<null>0</null> |
|
| 25 |
<type>float</type> |
|
| 26 |
<value>$lat_decimal</value> |
|
| 27 |
</_nullIf> |
|
| 28 |
</latitude_deg> |
|
| 29 |
<longitude_deg> |
|
| 30 |
<_nullIf> |
|
| 31 |
<null>0</null> |
|
| 32 |
<type>float</type> |
|
| 33 |
<value>$long_decimal</value> |
|
| 34 |
</_nullIf> |
|
| 35 |
</longitude_deg> |
|
| 36 |
</locationcoords> |
|
| 37 | 21 |
<locationevent> |
| 38 | 22 |
<method_id><method><name>$plot_methodology</name></method></method_id> |
| 39 | 23 |
<project_id><project><projectname>$project</projectname></project></project_id> |
| ... | ... | |
| 95 | 79 |
<locationplace> |
| 96 | 80 |
<place_id> |
| 97 | 81 |
<place> |
| 82 |
<coordinates_id> |
|
| 83 |
<coordinates> |
|
| 84 |
<latitude_deg> |
|
| 85 |
<_nullIf> |
|
| 86 |
<null>0</null> |
|
| 87 |
<type>float</type> |
|
| 88 |
<value>$lat_decimal</value> |
|
| 89 |
</_nullIf> |
|
| 90 |
</latitude_deg> |
|
| 91 |
<longitude_deg> |
|
| 92 |
<_nullIf> |
|
| 93 |
<null>0</null> |
|
| 94 |
<type>float</type> |
|
| 95 |
<value>$long_decimal</value> |
|
| 96 |
</_nullIf> |
|
| 97 |
</longitude_deg> |
|
| 98 |
</coordinates> |
|
| 99 |
</coordinates_id> |
|
| 98 | 100 |
<continent>$major_geo</continent> |
| 99 | 101 |
<country>$country</country> |
| 100 | 102 |
<county>$pol2</county> |
| ... | ... | |
| 108 | 110 |
</path> |
| 109 | 111 |
</_simplifyPath> |
| 110 | 112 |
</VegBIEN> |
| 111 |
Inserted 16 new rows into database |
|
| 113 |
Inserted 15 new rows into database |
|
| inputs/CVS/Organism/VegBIEN.csv | ||
|---|---|---|
| 1 | 1 |
CVS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments |
| 2 | 2 |
authorObsCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/else", |
| 3 |
locationAccuracy-m,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1, |
|
| 4 |
publicLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 5 |
publicLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 6 | 3 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/else/authoreventcode", |
| 7 | 4 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/cond/_exists", |
| 8 | 5 |
authorObsCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/authorlocationcode", |
| ... | ... | |
| 13 | 10 |
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1", |
| 14 | 11 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1, |
| 15 | 12 |
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| 13 |
locationAccuracy-m,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_deg/_noCV/value/_alt/1, |
|
| 14 |
publicLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 15 |
publicLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 16 | 16 |
county,/location/locationplace/*_id/place/county, |
| 17 | 17 |
state,/location/locationplace/*_id/place/stateprovince, |
| 18 | 18 |
confidentialityStatus,,** No join mapping for *confidentialityStatus ** |
| inputs/CVS/Organism/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<path> |
| 6 | 6 |
<location> |
| 7 | 7 |
<authorlocationcode>$authorObsCode</authorlocationcode> |
| 8 |
<locationcoords> |
|
| 9 |
<coordsaccuracy_deg><_noCV><value>$locationAccuracy-m</value></_noCV></coordsaccuracy_deg> |
|
| 10 |
<latitude_deg> |
|
| 11 |
<_nullIf> |
|
| 12 |
<null>0</null> |
|
| 13 |
<type>float</type> |
|
| 14 |
<value>$publicLatitude</value> |
|
| 15 |
</_nullIf> |
|
| 16 |
</latitude_deg> |
|
| 17 |
<longitude_deg> |
|
| 18 |
<_nullIf> |
|
| 19 |
<null>0</null> |
|
| 20 |
<type>float</type> |
|
| 21 |
<value>$publicLongitude</value> |
|
| 22 |
</_nullIf> |
|
| 23 |
</longitude_deg> |
|
| 24 |
</locationcoords> |
|
| 25 | 8 |
<locationevent> |
| 26 | 9 |
<authoreventcode>$authorObsCode</authoreventcode> |
| 27 | 10 |
<obsstartdate><_date><date>$obsStartDate</date></_date></obsstartdate> |
| ... | ... | |
| 56 | 39 |
<locationplace> |
| 57 | 40 |
<place_id> |
| 58 | 41 |
<place> |
| 42 |
<coordinates_id> |
|
| 43 |
<coordinates> |
|
| 44 |
<coordsaccuracy_deg><_noCV><value>$locationAccuracy-m</value></_noCV></coordsaccuracy_deg> |
|
| 45 |
<latitude_deg> |
|
| 46 |
<_nullIf> |
|
| 47 |
<null>0</null> |
|
| 48 |
<type>float</type> |
|
| 49 |
<value>$publicLatitude</value> |
|
| 50 |
</_nullIf> |
|
| 51 |
</latitude_deg> |
|
| 52 |
<longitude_deg> |
|
| 53 |
<_nullIf> |
|
| 54 |
<null>0</null> |
|
| 55 |
<type>float</type> |
|
| 56 |
<value>$publicLongitude</value> |
|
| 57 |
</_nullIf> |
|
| 58 |
</longitude_deg> |
|
| 59 |
</coordinates> |
|
| 60 |
</coordinates_id> |
|
| 59 | 61 |
<county>$county</county> |
| 60 | 62 |
<stateprovince>$state</stateprovince> |
| 61 | 63 |
</place> |
| inputs/REMIB/Specimen/VegBIEN.csv | ||
|---|---|---|
| 18 | 18 |
GROUP BY acronym, accession_number |
| 19 | 19 |
HAVING count(*) > 1 |
| 20 | 20 |
-----" |
| 21 |
lat_deg,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 22 |
long_deg,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 23 | 21 |
coll_day,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 24 | 22 |
coll_month,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| 25 | 23 |
coll_year,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/year/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 59 | 57 |
-----" |
| 60 | 58 |
locality,/location/locationnarrative/_merge/1, |
| 61 | 59 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 60 |
lat_deg,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 61 |
long_deg,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 62 | 62 |
country,/location/locationplace/*_id/place/country, |
| 63 | 63 |
county,/location/locationplace/*_id/place/county, |
| 64 | 64 |
state,/location/locationplace/*_id/place/stateprovince, |
| inputs/REMIB/Specimen/test.xml.ref | ||
|---|---|---|
| 10 | 10 |
<3>$accession_number</3> |
| 11 | 11 |
</_join> |
| 12 | 12 |
</authorlocationcode> |
| 13 |
<locationcoords> |
|
| 14 |
<latitude_deg> |
|
| 15 |
<_nullIf> |
|
| 16 |
<null>0</null> |
|
| 17 |
<type>float</type> |
|
| 18 |
<value>$lat_deg</value> |
|
| 19 |
</_nullIf> |
|
| 20 |
</latitude_deg> |
|
| 21 |
<longitude_deg> |
|
| 22 |
<_nullIf> |
|
| 23 |
<null>0</null> |
|
| 24 |
<type>float</type> |
|
| 25 |
<value>$long_deg</value> |
|
| 26 |
</_nullIf> |
|
| 27 |
</longitude_deg> |
|
| 28 |
</locationcoords> |
|
| 29 | 13 |
<locationevent> |
| 30 | 14 |
<taxonoccurrence> |
| 31 | 15 |
<aggregateoccurrence> |
| ... | ... | |
| 165 | 149 |
<locationplace> |
| 166 | 150 |
<place_id> |
| 167 | 151 |
<place> |
| 152 |
<coordinates_id> |
|
| 153 |
<coordinates> |
|
| 154 |
<latitude_deg> |
|
| 155 |
<_nullIf> |
|
| 156 |
<null>0</null> |
|
| 157 |
<type>float</type> |
|
| 158 |
<value>$lat_deg</value> |
|
| 159 |
</_nullIf> |
|
| 160 |
</latitude_deg> |
|
| 161 |
<longitude_deg> |
|
| 162 |
<_nullIf> |
|
| 163 |
<null>0</null> |
|
| 164 |
<type>float</type> |
|
| 165 |
<value>$long_deg</value> |
|
| 166 |
</_nullIf> |
|
| 167 |
</longitude_deg> |
|
| 168 |
</coordinates> |
|
| 169 |
</coordinates_id> |
|
| 168 | 170 |
<country>$country</country> |
| 169 | 171 |
<county>$county</county> |
| 170 | 172 |
<stateprovince>$state</stateprovince> |
| ... | ... | |
| 175 | 177 |
</path> |
| 176 | 178 |
</_simplifyPath> |
| 177 | 179 |
</VegBIEN> |
| 178 |
Inserted 27 new rows into database |
|
| 180 |
Inserted 26 new rows into database |
|
| inputs/CTFS/Plot/VegBIEN.csv | ||
|---|---|---|
| 14 | 14 |
GROUP BY ""Elevation""::real , ""LocationName"" |
| 15 | 15 |
ORDER BY ""Elevation""::real DESC |
| 16 | 16 |
-----" |
| 17 |
ShapeOfSite,/location/locationcoords/footprintgeometry_dwc, |
|
| 18 |
Latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 19 |
Longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 20 | 17 |
PlotName,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode", |
| 21 | 18 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode", |
| 22 | 19 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 23 | 20 |
PlotName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 24 | 21 |
DescriptionOfSite,/location/locationnarrative/_merge/1, |
| 25 | 22 |
LocationName,/location/locationnarrative/_merge/1, |
| 23 |
ShapeOfSite,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc, |
|
| 24 |
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 25 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 26 | 26 |
CountryName,/location/locationplace/*_id/place/country, |
| 27 | 27 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
| 28 | 28 |
PlotName,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
| inputs/CTFS/Plot/test.xml.ref | ||
|---|---|---|
| 8 | 8 |
<sourceaccessioncode>$PlotID</sourceaccessioncode> |
| 9 | 9 |
<area_m2><_ha_to_m2><value>$SizeOfSite</value></_ha_to_m2></area_m2> |
| 10 | 10 |
<elevation_m>$Elevation</elevation_m> |
| 11 |
<locationcoords> |
|
| 12 |
<footprintgeometry_dwc>$ShapeOfSite</footprintgeometry_dwc> |
|
| 13 |
<latitude_deg> |
|
| 14 |
<_nullIf> |
|
| 15 |
<null>0</null> |
|
| 16 |
<type>float</type> |
|
| 17 |
<value>$Latitude</value> |
|
| 18 |
</_nullIf> |
|
| 19 |
</latitude_deg> |
|
| 20 |
<longitude_deg> |
|
| 21 |
<_nullIf> |
|
| 22 |
<null>0</null> |
|
| 23 |
<type>float</type> |
|
| 24 |
<value>$Longitude</value> |
|
| 25 |
</_nullIf> |
|
| 26 |
</longitude_deg> |
|
| 27 |
</locationcoords> |
|
| 28 | 11 |
<locationnarrative> |
| 29 | 12 |
<_alt> |
| 30 | 13 |
<0>$DescriptionOfSite</0> |
| 31 | 14 |
<1>$LocationName</1> |
| 32 | 15 |
</_alt> |
| 33 | 16 |
</locationnarrative> |
| 34 |
<locationplace><place_id><place><country>$CountryName</country></place></place_id></locationplace> |
|
| 17 |
<locationplace> |
|
| 18 |
<place_id> |
|
| 19 |
<place> |
|
| 20 |
<coordinates_id> |
|
| 21 |
<coordinates> |
|
| 22 |
<footprintgeometry_dwc>$ShapeOfSite</footprintgeometry_dwc> |
|
| 23 |
<latitude_deg> |
|
| 24 |
<_nullIf> |
|
| 25 |
<null>0</null> |
|
| 26 |
<type>float</type> |
|
| 27 |
<value>$Latitude</value> |
|
| 28 |
</_nullIf> |
|
| 29 |
</latitude_deg> |
|
| 30 |
<longitude_deg> |
|
| 31 |
<_nullIf> |
|
| 32 |
<null>0</null> |
|
| 33 |
<type>float</type> |
|
| 34 |
<value>$Longitude</value> |
|
| 35 |
</_nullIf> |
|
| 36 |
</longitude_deg> |
|
| 37 |
</coordinates> |
|
| 38 |
</coordinates_id> |
|
| 39 |
<country>$CountryName</country> |
|
| 40 |
</place> |
|
| 41 |
</place_id> |
|
| 42 |
</locationplace> |
|
| 35 | 43 |
</location> |
| 36 | 44 |
</path> |
| 37 | 45 |
</_simplifyPath> |
| 38 | 46 |
</VegBIEN> |
| 39 |
Inserted 8 new rows into database |
|
| 47 |
Inserted 9 new rows into database |
|
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 2 | 2 |
PlotCD,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists", |
| 3 | 3 |
PlotCD,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode", |
| 4 | 4 |
PlotCD,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode", |
| 5 |
DecimalLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 6 |
DecimalLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 7 | 5 |
PlotCD,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode", |
| 8 | 6 |
MeasDay,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/day/_nullIf:[null=0,type=float]/value", |
| 9 | 7 |
MeasMon,"/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/2/_date/month/_nullIf:[null=0,type=float]/value", |
| ... | ... | |
| 25 | 23 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 26 | 24 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 27 | 25 |
SpecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 26 |
DecimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 27 |
DecimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 28 | 28 |
County,/location/locationplace/*_id/place/county, |
| 29 | 29 |
StateProvince,/location/locationplace/*_id/place/stateprovince, |
| 30 | 30 |
PlotCD,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
| inputs/FIA/Organism/test.xml.ref | ||
|---|---|---|
| 5 | 5 |
<path> |
| 6 | 6 |
<location> |
| 7 | 7 |
<sourceaccessioncode>$PlotCD</sourceaccessioncode> |
| 8 |
<locationcoords> |
|
| 9 |
<latitude_deg> |
|
| 10 |
<_nullIf> |
|
| 11 |
<null>0</null> |
|
| 12 |
<type>float</type> |
|
| 13 |
<value>$DecimalLatitude</value> |
|
| 14 |
</_nullIf> |
|
| 15 |
</latitude_deg> |
|
| 16 |
<longitude_deg> |
|
| 17 |
<_nullIf> |
|
| 18 |
<null>0</null> |
|
| 19 |
<type>float</type> |
|
| 20 |
<value>$DecimalLongitude</value> |
|
| 21 |
</_nullIf> |
|
| 22 |
</longitude_deg> |
|
| 23 |
</locationcoords> |
|
| 24 | 8 |
<locationevent> |
| 25 | 9 |
<taxonoccurrence> |
| 26 | 10 |
<aggregateoccurrence> |
| ... | ... | |
| 134 | 118 |
<locationplace> |
| 135 | 119 |
<place_id> |
| 136 | 120 |
<place> |
| 121 |
<coordinates_id> |
|
| 122 |
<coordinates> |
|
| 123 |
<latitude_deg> |
|
| 124 |
<_nullIf> |
|
| 125 |
<null>0</null> |
|
| 126 |
<type>float</type> |
|
| 127 |
<value>$DecimalLatitude</value> |
|
| 128 |
</_nullIf> |
|
| 129 |
</latitude_deg> |
|
| 130 |
<longitude_deg> |
|
| 131 |
<_nullIf> |
|
| 132 |
<null>0</null> |
|
| 133 |
<type>float</type> |
|
| 134 |
<value>$DecimalLongitude</value> |
|
| 135 |
</_nullIf> |
|
| 136 |
</longitude_deg> |
|
| 137 |
</coordinates> |
|
| 138 |
</coordinates_id> |
|
| 137 | 139 |
<county>$County</county> |
| 138 | 140 |
<stateprovince>$StateProvince</stateprovince> |
| 139 | 141 |
</place> |
| inputs/SALVIAS/plotMetadata/VegBIEN.csv | ||
|---|---|---|
| 8 | 8 |
Elev,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick. |
| 9 | 9 |
elev_max_m,/location/elevation_m/_alt/2/_avg/max, |
| 10 | 10 |
elev_min_m,/location/elevation_m/_alt/2/_avg/min, |
| 11 |
LatDec,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 12 |
LongDec,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 13 | 11 |
PlotMethod,/location/locationevent/*_id/method/name, |
| 14 | 12 |
project_id,/location/locationevent/*_id/project/sourceaccessioncode, |
| 15 | 13 |
SiteCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project) |
| ... | ... | |
| 41 | 39 |
Temp,/location/locationevent/temperature_c, |
| 42 | 40 |
Locality_Description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX" |
| 43 | 41 |
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 42 |
LatDec,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 43 |
LongDec,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 44 | 44 |
MajorGeo,/location/locationplace/*_id/place/continent, |
| 45 | 45 |
Country,/location/locationplace/*_id/place/country, |
| 46 | 46 |
pol2,/location/locationplace/*_id/place/county,Brad: No pol2=countyParish |
| inputs/SALVIAS/plotMetadata/test.xml.ref | ||
|---|---|---|
| 18 | 18 |
</2> |
| 19 | 19 |
</_alt> |
| 20 | 20 |
</elevation_m> |
| 21 |
<locationcoords> |
|
| 22 |
<latitude_deg> |
|
| 23 |
<_nullIf> |
|
| 24 |
<null>0</null> |
|
| 25 |
<type>float</type> |
|
| 26 |
<value>$LatDec</value> |
|
| 27 |
</_nullIf> |
|
| 28 |
</latitude_deg> |
|
| 29 |
<longitude_deg> |
|
| 30 |
<_nullIf> |
|
| 31 |
<null>0</null> |
|
| 32 |
<type>float</type> |
|
| 33 |
<value>$LongDec</value> |
|
| 34 |
</_nullIf> |
|
| 35 |
</longitude_deg> |
|
| 36 |
</locationcoords> |
|
| 37 | 21 |
<locationevent> |
| 38 | 22 |
<method_id><method><name>$PlotMethod</name></method></method_id> |
| 39 | 23 |
<project_id><project><sourceaccessioncode>$project_id</sourceaccessioncode></project></project_id> |
| ... | ... | |
| 105 | 89 |
<locationplace> |
| 106 | 90 |
<place_id> |
| 107 | 91 |
<place> |
| 92 |
<coordinates_id> |
|
| 93 |
<coordinates> |
|
| 94 |
<latitude_deg> |
|
| 95 |
<_nullIf> |
|
| 96 |
<null>0</null> |
|
| 97 |
<type>float</type> |
|
| 98 |
<value>$LatDec</value> |
|
| 99 |
</_nullIf> |
|
| 100 |
</latitude_deg> |
|
| 101 |
<longitude_deg> |
|
| 102 |
<_nullIf> |
|
| 103 |
<null>0</null> |
|
| 104 |
<type>float</type> |
|
| 105 |
<value>$LongDec</value> |
|
| 106 |
</_nullIf> |
|
| 107 |
</longitude_deg> |
|
| 108 |
</coordinates> |
|
| 109 |
</coordinates_id> |
|
| 108 | 110 |
<continent>$MajorGeo</continent> |
| 109 | 111 |
<country>$Country</country> |
| 110 | 112 |
<county>$pol2</county> |
| inputs/U/Specimen/test.xml.ref | ||
|---|---|---|
| 10 | 10 |
<2>$Barcode</2> |
| 11 | 11 |
</_alt> |
| 12 | 12 |
</authorlocationcode> |
| 13 |
<locationcoords> |
|
| 14 |
<latitude_deg> |
|
| 15 |
<_nullIf> |
|
| 16 |
<null>0</null> |
|
| 17 |
<type>float</type> |
|
| 18 |
<value>$Lat</value> |
|
| 19 |
</_nullIf> |
|
| 20 |
</latitude_deg> |
|
| 21 |
<longitude_deg> |
|
| 22 |
<_nullIf> |
|
| 23 |
<null>0</null> |
|
| 24 |
<type>float</type> |
|
| 25 |
<value>$Long</value> |
|
| 26 |
</_nullIf> |
|
| 27 |
</longitude_deg> |
|
| 28 |
</locationcoords> |
|
| 29 | 13 |
<locationevent> |
| 30 | 14 |
<taxonoccurrence> |
| 31 | 15 |
<aggregateoccurrence> |
| ... | ... | |
| 203 | 187 |
</3> |
| 204 | 188 |
</_merge> |
| 205 | 189 |
</locationnarrative> |
| 206 |
<locationplace><place_id><place><country>$Country</country></place></place_id></locationplace> |
|
| 190 |
<locationplace> |
|
| 191 |
<place_id> |
|
| 192 |
<place> |
|
| 193 |
<coordinates_id> |
|
| 194 |
<coordinates> |
|
| 195 |
<latitude_deg> |
|
| 196 |
<_nullIf> |
|
| 197 |
<null>0</null> |
|
| 198 |
<type>float</type> |
|
| 199 |
<value>$Lat</value> |
|
| 200 |
</_nullIf> |
|
| 201 |
</latitude_deg> |
|
| 202 |
<longitude_deg> |
|
| 203 |
<_nullIf> |
|
| 204 |
<null>0</null> |
|
| 205 |
<type>float</type> |
|
| 206 |
<value>$Long</value> |
|
| 207 |
</_nullIf> |
|
| 208 |
</longitude_deg> |
|
| 209 |
</coordinates> |
|
| 210 |
</coordinates_id> |
|
| 211 |
<country>$Country</country> |
|
| 212 |
</place> |
|
| 213 |
</place_id> |
|
| 214 |
</locationplace> |
|
| 207 | 215 |
</location> |
| 208 | 216 |
</path> |
| 209 | 217 |
</_simplifyPath> |
| 210 | 218 |
</VegBIEN> |
| 211 |
Inserted 32 new rows into database |
|
| 219 |
Inserted 31 new rows into database |
|
| inputs/ARIZ/Specimen/test.xml.ref | ||
|---|---|---|
| 27 | 27 |
<min>$MinimumElevationInMeters</min> |
| 28 | 28 |
</_avg> |
| 29 | 29 |
</elevation_m> |
| 30 |
<locationcoords> |
|
| 31 |
<coordsaccuracy_deg><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_deg> |
|
| 32 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 33 |
<latitude_deg> |
|
| 34 |
<_nullIf> |
|
| 35 |
<null>0</null> |
|
| 36 |
<type>float</type> |
|
| 37 |
<value>$DecimalLatitude</value> |
|
| 38 |
</_nullIf> |
|
| 39 |
</latitude_deg> |
|
| 40 |
<longitude_deg> |
|
| 41 |
<_nullIf> |
|
| 42 |
<null>0</null> |
|
| 43 |
<type>float</type> |
|
| 44 |
<value>$DecimalLongitude</value> |
|
| 45 |
</_nullIf> |
|
| 46 |
</longitude_deg> |
|
| 47 |
</locationcoords> |
|
| 48 | 30 |
<locationevent> |
| 49 | 31 |
<taxonoccurrence> |
| 50 | 32 |
<aggregateoccurrence> |
| ... | ... | |
| 313 | 295 |
<locationplace> |
| 314 | 296 |
<place_id> |
| 315 | 297 |
<place> |
| 298 |
<coordinates_id> |
|
| 299 |
<coordinates> |
|
| 300 |
<coordsaccuracy_deg><_noCV><value>$CoordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_deg> |
|
| 301 |
<footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc> |
|
| 302 |
<latitude_deg> |
|
| 303 |
<_nullIf> |
|
| 304 |
<null>0</null> |
|
| 305 |
<type>float</type> |
|
| 306 |
<value>$DecimalLatitude</value> |
|
| 307 |
</_nullIf> |
|
| 308 |
</latitude_deg> |
|
| 309 |
<longitude_deg> |
|
| 310 |
<_nullIf> |
|
| 311 |
<null>0</null> |
|
| 312 |
<type>float</type> |
|
| 313 |
<value>$DecimalLongitude</value> |
|
| 314 |
</_nullIf> |
|
| 315 |
</longitude_deg> |
|
| 316 |
</coordinates> |
|
| 317 |
</coordinates_id> |
|
| 316 | 318 |
<continent>$ContinentOcean</continent> |
| 317 | 319 |
<country>$Country</country> |
| 318 | 320 |
<county>$County</county> |
| ... | ... | |
| 324 | 326 |
</path> |
| 325 | 327 |
</_simplifyPath> |
| 326 | 328 |
</VegBIEN> |
| 327 |
Inserted 41 new rows into database |
|
| 329 |
Inserted 39 new rows into database |
|
| inputs/GBIF/Specimen/test.xml.ref | ||
|---|---|---|
| 17 | 17 |
<min>$MinimumElevationInMeter</min> |
| 18 | 18 |
</_avg> |
| 19 | 19 |
</elevation_m> |
| 20 |
<locationcoords> |
|
| 21 |
<latitude_deg> |
|
| 22 |
<_nullIf> |
|
| 23 |
<null>0</null> |
|
| 24 |
<type>float</type> |
|
| 25 |
<value>$VerbatimLatitude</value> |
|
| 26 |
</_nullIf> |
|
| 27 |
</latitude_deg> |
|
| 28 |
<longitude_deg> |
|
| 29 |
<_nullIf> |
|
| 30 |
<null>0</null> |
|
| 31 |
<type>float</type> |
|
| 32 |
<value>$VerbatimLongitude</value> |
|
| 33 |
</_nullIf> |
|
| 34 |
</longitude_deg> |
|
| 35 |
</locationcoords> |
|
| 36 | 20 |
<locationevent> |
| 37 | 21 |
<taxonoccurrence> |
| 38 | 22 |
<aggregateoccurrence> |
| ... | ... | |
| 258 | 242 |
<locationplace> |
| 259 | 243 |
<place_id> |
| 260 | 244 |
<place> |
| 245 |
<coordinates_id> |
|
| 246 |
<coordinates> |
|
| 247 |
<latitude_deg> |
|
| 248 |
<_nullIf> |
|
| 249 |
<null>0</null> |
|
| 250 |
<type>float</type> |
|
| 251 |
<value>$VerbatimLatitude</value> |
|
| 252 |
</_nullIf> |
|
| 253 |
</latitude_deg> |
|
| 254 |
<longitude_deg> |
|
| 255 |
<_nullIf> |
|
| 256 |
<null>0</null> |
|
| 257 |
<type>float</type> |
|
| 258 |
<value>$VerbatimLongitude</value> |
|
| 259 |
</_nullIf> |
|
| 260 |
</longitude_deg> |
|
| 261 |
</coordinates> |
|
| 262 |
</coordinates_id> |
|
| 261 | 263 |
<country>$Country</country> |
| 262 | 264 |
<county>$County</county> |
| 263 | 265 |
<stateprovince>$StateProvince</stateprovince> |
| ... | ... | |
| 268 | 270 |
</path> |
| 269 | 271 |
</_simplifyPath> |
| 270 | 272 |
</VegBIEN> |
| 271 |
Inserted 43 new rows into database |
|
| 273 |
Inserted 41 new rows into database |
|
| inputs/NCU-NCSC/Specimen/test.xml.ref | ||
|---|---|---|
| 22 | 22 |
<value>$Elevation</value> |
| 23 | 23 |
</_units> |
| 24 | 24 |
</elevation_m> |
| 25 |
<locationcoords> |
|
| 26 |
<coordsaccuracy_deg><_noCV><value>$Accuracy</value></_noCV></coordsaccuracy_deg> |
|
| 27 |
<latitude_deg> |
|
| 28 |
<_nullIf> |
|
| 29 |
<null>0</null> |
|
| 30 |
<type>float</type> |
|
| 31 |
<value> |
|
| 32 |
<_replace> |
|
| 33 |
<\?$></\?$> |
|
| 34 |
<value>$Lat (-=S)</value> |
|
| 35 |
</_replace> |
|
| 36 |
</value> |
|
| 37 |
</_nullIf> |
|
| 38 |
</latitude_deg> |
|
| 39 |
<longitude_deg> |
|
| 40 |
<_nullIf> |
|
| 41 |
<null>0</null> |
|
| 42 |
<type>float</type> |
|
| 43 |
<value> |
|
| 44 |
<_replace> |
|
| 45 |
<\?$></\?$> |
|
| 46 |
<value>$Long (-=W)</value> |
|
| 47 |
</_replace> |
|
| 48 |
</value> |
|
| 49 |
</_nullIf> |
|
| 50 |
</longitude_deg> |
|
| 51 |
</locationcoords> |
|
| 52 | 25 |
<locationevent> |
| 53 | 26 |
<taxonoccurrence> |
| 54 | 27 |
<aggregateoccurrence> |
| ... | ... | |
| 91 | 64 |
<locationplace> |
| 92 | 65 |
<place_id> |
| 93 | 66 |
<place> |
| 67 |
<coordinates_id> |
|
| 68 |
<coordinates> |
|
| 69 |
<coordsaccuracy_deg><_noCV><value>$Accuracy</value></_noCV></coordsaccuracy_deg> |
|
| 70 |
<latitude_deg> |
|
| 71 |
<_nullIf> |
|
| 72 |
<null>0</null> |
|
| 73 |
<type>float</type> |
|
| 74 |
<value> |
|
| 75 |
<_replace> |
|
| 76 |
<\?$></\?$> |
|
| 77 |
<value>$Lat (-=S)</value> |
|
| 78 |
</_replace> |
|
| 79 |
</value> |
|
| 80 |
</_nullIf> |
|
| 81 |
</latitude_deg> |
|
| 82 |
<longitude_deg> |
|
| 83 |
<_nullIf> |
|
| 84 |
<null>0</null> |
|
| 85 |
<type>float</type> |
|
| 86 |
<value> |
|
| 87 |
<_replace> |
|
| 88 |
<\?$></\?$> |
|
| 89 |
<value>$Long (-=W)</value> |
|
| 90 |
</_replace> |
|
| 91 |
</value> |
|
| 92 |
</_nullIf> |
|
| 93 |
</longitude_deg> |
|
| 94 |
</coordinates> |
|
| 95 |
</coordinates_id> |
|
| 94 | 96 |
<country>$Country</country> |
| 95 | 97 |
<county>$County</county> |
| 96 | 98 |
<stateprovince>$State</stateprovince> |
| ... | ... | |
| 102 | 104 |
</path> |
| 103 | 105 |
</_simplifyPath> |
| 104 | 106 |
</VegBIEN> |
| 105 |
Inserted 28 new rows into database |
|
| 107 |
Inserted 26 new rows into database |
|
| inputs/bien_web/observation/VegBIEN.csv | ||
|---|---|---|
| 4 | 4 |
plotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
| 5 | 5 |
plotAreaHa,/location/area_m2/_ha_to_m2/value, |
| 6 | 6 |
elevation_m,/location/elevation_m/_alt/1, |
| 7 |
latitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 8 |
longitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 9 | 7 |
plotMethod,/location/locationevent/*_id/method/name, |
| 10 | 8 |
plotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if event""]/then/parent_id/locationevent/*_id/location/authorlocationcode", |
| 11 | 9 |
observationDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1/_*/date, |
| ... | ... | |
| 39 | 37 |
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 40 | 38 |
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname, |
| 41 | 39 |
collector,/location/locationevent/taxonoccurrence/verbatimcollectorname, |
| 40 |
latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 41 |
longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 42 | 42 |
country,/location/locationplace/*_id/place/country, |
| 43 | 43 |
countyParish,/location/locationplace/*_id/place/county, |
| 44 | 44 |
stateProvince,/location/locationplace/*_id/place/stateprovince, |
| inputs/MO/Specimen/test.xml.ref | ||
|---|---|---|
| 17 | 17 |
<min>$MinimumElevation</min> |
| 18 | 18 |
</_avg> |
| 19 | 19 |
</elevation_m> |
| 20 |
<locationcoords> |
|
| 21 |
<latitude_deg> |
|
| 22 |
<_nullIf> |
|
| 23 |
<null>0</null> |
|
| 24 |
<type>float</type> |
|
| 25 |
<value>$latitude</value> |
|
| 26 |
</_nullIf> |
|
| 27 |
</latitude_deg> |
|
| 28 |
<longitude_deg> |
|
| 29 |
<_nullIf> |
|
| 30 |
<null>0</null> |
|
| 31 |
<type>float</type> |
|
| 32 |
<value>$longitude</value> |
|
| 33 |
</_nullIf> |
|
| 34 |
</longitude_deg> |
|
| 35 |
</locationcoords> |
|
| 36 | 20 |
<locationevent> |
| 37 | 21 |
<taxonoccurrence> |
| 38 | 22 |
<aggregateoccurrence> |
| ... | ... | |
| 224 | 208 |
<locationplace> |
| 225 | 209 |
<place_id> |
| 226 | 210 |
<place> |
| 211 |
<coordinates_id> |
|
| 212 |
<coordinates> |
|
| 213 |
<latitude_deg> |
|
| 214 |
<_nullIf> |
|
| 215 |
<null>0</null> |
|
| 216 |
<type>float</type> |
|
| 217 |
<value>$latitude</value> |
|
| 218 |
</_nullIf> |
|
| 219 |
</latitude_deg> |
|
| 220 |
<longitude_deg> |
|
| 221 |
<_nullIf> |
|
| 222 |
<null>0</null> |
|
| 223 |
<type>float</type> |
|
| 224 |
<value>$longitude</value> |
|
| 225 |
</_nullIf> |
|
| 226 |
</longitude_deg> |
|
| 227 |
</coordinates> |
|
| 228 |
</coordinates_id> |
|
| 227 | 229 |
<continent>$ContinentOcean</continent> |
| 228 | 230 |
<country>$Country</country> |
| 229 | 231 |
<county>$County</county> |
| ... | ... | |
| 235 | 237 |
</path> |
| 236 | 238 |
</_simplifyPath> |
| 237 | 239 |
</VegBIEN> |
| 238 |
Inserted 36 new rows into database |
|
| 240 |
Inserted 34 new rows into database |
|
| inputs/QMOR/Specimen/VegBIEN.csv | ||
|---|---|---|
| 8 | 8 |
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value", |
| 9 | 9 |
maximumElevationInMeters,/location/elevation_m/_alt/2/_avg/max, |
| 10 | 10 |
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min, |
| 11 |
coordinateUncertaintyInMeters,/location/locationcoords/coordsaccuracy_deg/_noCV/value/_alt/1, |
|
| 12 |
footprintWKT,/location/locationcoords/footprintgeometry_dwc, |
|
| 13 |
decimalLatitude,"/location/locationcoords/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 14 |
decimalLongitude,"/location/locationcoords/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 15 |
verbatimLatitude,/location/locationcoords/verbatimlatitude, |
|
| 16 |
verbatimLongitude,/location/locationcoords/verbatimlongitude, |
|
| 17 | 11 |
samplingProtocol,/location/locationevent/*_id/method/name, |
| 18 | 12 |
eventDate,/location/locationevent/obsenddate/_*/date/_alt/2/_dateRangeEnd/value, |
| 19 | 13 |
eventDate,/location/locationevent/obsstartdate/_*/date/_alt/2/_dateRangeStart/value, |
| ... | ... | |
| 72 | 66 |
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 73 | 67 |
locality,/location/locationnarrative/_merge/1, |
| 74 | 68 |
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?" |
| 69 |
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_deg/_noCV/value/_alt/1, |
|
| 70 |
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc, |
|
| 71 |
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 72 |
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
|
| 73 |
verbatimLatitude,/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude, |
|
| 74 |
verbatimLongitude,/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude, |
|
| 75 | 75 |
continent,/location/locationplace/*_id/place/continent, |
| 76 | 76 |
country,/location/locationplace/*_id/place/country, |
| 77 | 77 |
county,/location/locationplace/*_id/place/county, |
| inputs/SpeciesLink/Specimen/test.xml.ref | ||
|---|---|---|
| 57 | 57 |
</min> |
| 58 | 58 |
</_avg> |
| 59 | 59 |
</elevation_m> |
| 60 |
<locationcoords> |
|
| 61 |
<coordsaccuracy_deg> |
|
| 62 |
<_noCV> |
|
| 63 |
<value> |
|
| 64 |
<_alt> |
|
| 65 |
<1>$dwc_terms_coordinateUncertaintyInMeters</1> |
|
| 66 |
<2>$conceptual_darwin_2003_1_0_CoordinatePrecision</2> |
|
| 67 |
</_alt> |
|
| 68 |
</value> |
|
| 69 |
</_noCV> |
|
| 70 |
</coordsaccuracy_deg> |
|
| 71 |
<footprintgeometry_dwc>$conceptual_darwin_2003_1_0_BoundingBox</footprintgeometry_dwc> |
|
| 72 |
<latitude_deg> |
|
| 73 |
<_nullIf> |
|
| 74 |
<null>0</null> |
|
| 75 |
<type>float</type> |
|
| 76 |
<value> |
|
| 77 |
<_alt> |
|
| 78 |
<0>$conceptual_darwin_2003_1_0_Latitude</0> |
|
| 79 |
<1>$dwc_geospatial_DecimalLatitude</1> |
|
| 80 |
<2>$dwc_terms_decimalLatitude</2> |
|
| 81 |
</_alt> |
|
| 82 |
</value> |
|
| 83 |
</_nullIf> |
|
| 84 |
</latitude_deg> |
|
| 85 |
<longitude_deg> |
|
| 86 |
<_nullIf> |
|
| 87 |
<null>0</null> |
|
| 88 |
<type>float</type> |
|
| 89 |
<value> |
|
| 90 |
<_alt> |
|
| 91 |
<0>$conceptual_darwin_2003_1_0_Longitude</0> |
|
| 92 |
<1>$dwc_geospatial_DecimalLongitude</1> |
|
| 93 |
<2>$dwc_terms_decimalLongitude</2> |
|
| 94 |
</_alt> |
|
| 95 |
</value> |
|
| 96 |
</_nullIf> |
|
| 97 |
</longitude_deg> |
|
| 98 |
<verbatimlatitude> |
|
| 99 |
<_alt> |
|
| 100 |
<0>$dwc_geospatial_VerbatimLatitude</0> |
|
| 101 |
<1>$dwc_terms_verbatimLatitude</1> |
|
| 102 |
</_alt> |
|
| 103 |
</verbatimlatitude> |
|
| 104 |
<verbatimlongitude> |
|
| 105 |
<_alt> |
|
| 106 |
<0>$dwc_geospatial_VerbatimLongitude</0> |
|
| 107 |
<1>$dwc_terms_verbatimLongitude</1> |
|
| 108 |
</_alt> |
|
| 109 |
</verbatimlongitude> |
|
| 110 |
</locationcoords> |
|
| 111 | 60 |
<locationevent> |
| 112 | 61 |
<taxonoccurrence> |
| 113 | 62 |
<aggregateoccurrence> |
| ... | ... | |
| 633 | 582 |
<locationplace> |
| 634 | 583 |
<place_id> |
| 635 | 584 |
<place> |
| 585 |
<coordinates_id> |
|
| 586 |
<coordinates> |
|
| 587 |
<coordsaccuracy_deg> |
|
| 588 |
<_noCV> |
|
| 589 |
<value> |
|
| 590 |
<_alt> |
|
| 591 |
<1>$dwc_terms_coordinateUncertaintyInMeters</1> |
|
| 592 |
<2>$conceptual_darwin_2003_1_0_CoordinatePrecision</2> |
|
| 593 |
</_alt> |
|
| 594 |
</value> |
|
| 595 |
</_noCV> |
|
| 596 |
</coordsaccuracy_deg> |
|
| 597 |
<footprintgeometry_dwc>$conceptual_darwin_2003_1_0_BoundingBox</footprintgeometry_dwc> |
|
| 598 |
<latitude_deg> |
|
| 599 |
<_nullIf> |
|
| 600 |
<null>0</null> |
|
| 601 |
<type>float</type> |
|
| 602 |
<value> |
|
| 603 |
<_alt> |
|
| 604 |
<0>$conceptual_darwin_2003_1_0_Latitude</0> |
|
| 605 |
<1>$dwc_geospatial_DecimalLatitude</1> |
|
| 606 |
<2>$dwc_terms_decimalLatitude</2> |
|
| 607 |
</_alt> |
|
| 608 |
</value> |
|
| 609 |
</_nullIf> |
|
| 610 |
</latitude_deg> |
|
| 611 |
<longitude_deg> |
|
| 612 |
<_nullIf> |
|
| 613 |
<null>0</null> |
|
| 614 |
<type>float</type> |
|
| 615 |
<value> |
|
| 616 |
<_alt> |
|
| 617 |
<0>$conceptual_darwin_2003_1_0_Longitude</0> |
|
| 618 |
<1>$dwc_geospatial_DecimalLongitude</1> |
|
| 619 |
<2>$dwc_terms_decimalLongitude</2> |
|
| 620 |
</_alt> |
|
| 621 |
</value> |
|
| 622 |
</_nullIf> |
|
| 623 |
</longitude_deg> |
|
| 624 |
<verbatimlatitude> |
|
| 625 |
<_alt> |
|
| 626 |
<0>$dwc_geospatial_VerbatimLatitude</0> |
|
| 627 |
<1>$dwc_terms_verbatimLatitude</1> |
|
| 628 |
</_alt> |
|
| 629 |
</verbatimlatitude> |
|
| 630 |
<verbatimlongitude> |
|
| 631 |
<_alt> |
|
| 632 |
<0>$dwc_geospatial_VerbatimLongitude</0> |
|
| 633 |
<1>$dwc_terms_verbatimLongitude</1> |
|
| 634 |
</_alt> |
|
| 635 |
</verbatimlongitude> |
|
| 636 |
</coordinates> |
|
| 637 |
</coordinates_id> |
|
| 636 | 638 |
<continent> |
| 637 | 639 |
<_alt> |
| 638 | 640 |
<0>$conceptual_darwin_2003_1_0_ContinentOcean</0> |
| inputs/MO/Specimen/VegBIEN.csv | ||
|---|---|---|
| 5 | 5 |
CatalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else", |
| 6 | 6 |
MaximumElevation,/location/elevation_m/_alt/2/_avg/max, |
| 7 | 7 |
MinimumElevation,/location/elevation_m/_alt/2/_avg/min, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Remapped latitude/longitude to new coordinates table