Revision 5946
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/.NCBI/nodes/map.csv | ||
|---|---|---|
| 11 | 11 |
8,*8,, |
| 12 | 12 |
9,*9,, |
| 13 | 13 |
names.src.row_num,*names.src.row_num,, |
| 14 |
name_txt,taxonName,, |
|
| 14 |
name_txt,taxonNameOrEpithet,,
|
|
| 15 | 15 |
unique name,*unique name,, |
| 16 | 16 |
name class,*name class,, |
| inputs/.NCBI/nodes/new_terms.csv | ||
|---|---|---|
| 1 | 1 |
tax_id,taxonID,, |
| 2 | 2 |
parent tax_id,parentTaxonID,, |
| 3 | 3 |
rank,taxonRank,, |
| 4 |
name_txt,taxonName,, |
|
| 4 |
name_txt,taxonNameOrEpithet,, |
|
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 122 | 122 |
individualID,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else", |
| 123 | 123 |
occurrenceID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3, |
| 124 | 124 |
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname, |
| 125 |
taxonName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 125 |
taxonNameOrEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 126 | 126 |
verbatimScientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists", |
| 127 | 127 |
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_join_words/1/_taxon_family_require_std/family", |
| 128 | 128 |
scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[creator_id/party:[creator_id=0]/organizationname=TNRS]/taxonomicname/_join_words/2/_alt/1", |
| ... | ... | |
| 195 | 195 |
taxonConceptID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 196 | 196 |
taxonID,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 197 | 197 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank", |
| 198 |
taxonName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then", |
|
| 198 |
taxonNameOrEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then",
|
|
| 199 | 199 |
matchedFamilyFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/1, |
| 200 | 200 |
matchedGenusFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/2, |
| 201 | 201 |
matchedSpeciesFit_fraction,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_max/3, |
| ... | ... | |
| 226 | 226 |
cultivar,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/8/_join_words:[1=""cult. ""]/2", |
| 227 | 227 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/2, |
| 228 | 228 |
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/3/_if[@name=""if has taxonomic name""]/cond/_has_taxonomic_name/rank", |
| 229 |
taxonName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/3/_if[@name=""if has taxonomic name""]/then", |
|
| 229 |
taxonNameOrEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/3/_if[@name=""if has taxonomic name""]/then",
|
|
| 230 | 230 |
taxonomicStatus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonstatus, |
| 231 | 231 |
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author, |
| 232 | 232 |
binomial,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/binomial, |
| mappings/VegCore.csv | ||
|---|---|---|
| 30 | 30 |
diameterBreastHeightGentry,Expanded for clarity,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=stems&target=tbl_structure.php#gentry_dbh,7 |
| 31 | 31 |
stemID,,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=stems&target=tbl_structure.php#stem_id,1 |
| 32 | 32 |
stemNotes,,http://nimoy.nceas.ucsb.edu/phpmyadmin/index.php?db=salvias_plots&table=stems&target=tbl_structure.php#stem_notes,8 |
| 33 |
taxonName,,"http://rs.tdwg.org/dwc/terms/#Taxon, http://rs.tdwg.org/dwc/terms/#specificEpithet, http://rs.tdwg.org/dwc/terms/#higherClassification, http://rs.tdwg.org/dwc/terms/#scientificName", |
|
| 33 |
taxonNameOrEpithet,,"http://rs.tdwg.org/dwc/terms/#Taxon, http://rs.tdwg.org/dwc/terms/#specificEpithet, http://rs.tdwg.org/dwc/terms/#higherClassification, http://rs.tdwg.org/dwc/terms/#scientificName",
|
|
| 34 | 34 |
acceptedNameUsage,,http://rs.tdwg.org/dwc/terms/#acceptedNameUsage,135 |
| 35 | 35 |
acceptedNameUsageID,,http://rs.tdwg.org/dwc/terms/#acceptedNameUsageID,128 |
| 36 | 36 |
associatedMedia,,http://rs.tdwg.org/dwc/terms/#associatedMedia,36 |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 122 | 122 |
individualID,"//taxonoccurrence/sourceaccessioncode/_if[@name=""if organism in AggregateOccurrence""]/else", |
| 123 | 123 |
occurrenceID,//taxonoccurrence/sourceaccessioncode, |
| 124 | 124 |
identifiedBy,//taxonoccurrence/taxondetermination[]/*_id/party/fullname, |
| 125 |
taxonName,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists", |
|
| 125 |
taxonNameOrEpithet,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists",
|
|
| 126 | 126 |
verbatimScientificName,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/cond/_exists", |
| 127 | 127 |
family,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel/taxonomicname", |
| 128 | 128 |
scientificName,"//*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel/taxonomicname", |
| ... | ... | |
| 195 | 195 |
taxonConceptID,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 196 | 196 |
taxonID,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/sourceaccessioncode, |
| 197 | 197 |
taxonRank,"//taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond", |
| 198 |
taxonName,"//taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then", |
|
| 198 |
taxonNameOrEpithet,"//taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/then",
|
|
| 199 | 199 |
matchedFamilyFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
| 200 | 200 |
matchedGenusFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
| 201 | 201 |
matchedSpeciesFit_fraction,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/matched_label_fit_fraction, |
| ... | ... | |
| 226 | 226 |
cultivar,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname, |
| 227 | 227 |
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname, |
| 228 | 228 |
taxonRank,"//taxonlabel/taxonomicname/_if[@name=""if has taxonomic name""]/cond", |
| 229 |
taxonName,"//taxonlabel/taxonomicname/_if[@name=""if has taxonomic name""]/then", |
|
| 229 |
taxonNameOrEpithet,"//taxonlabel/taxonomicname/_if[@name=""if has taxonomic name""]/then",
|
|
| 230 | 230 |
taxonomicStatus,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonstatus, |
| 231 | 231 |
scientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/author, |
| 232 | 232 |
binomial,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/binomial, |
Also available in: Unified diff
mappings/VegCore.csv: Renamed taxonName to taxonNameOrEpithet for clarity