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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 over 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 5959 about 12 years Aaron Marcuse-Kubitza import_all: After starting geoscrub import in t...
  config 272 about 13 years Aaron Marcuse-Kubitza Moved bien_password to new config dir
  inputs 5964 about 12 years Aaron Marcuse-Kubitza inputs/import.stats.xls: Updated import times
  lib 5967 about 12 years Aaron Marcuse-Kubitza sql.py: run_query_into(): add_pkey_: Use add_pk...
  mappings 5958 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: matched place: Al...
  schemas 5962 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: make_analytical_db(): Trun...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5965 about 12 years Aaron Marcuse-Kubitza Added validation/BIEN2_Analytical_DB_overview.docx
Makefile 9.87 KB 5679 about 12 years Aaron Marcuse-Kubitza root Makefile: VegBIEN DB: Schemas: schemas/rot...
README.TXT 12.5 KB 5966 about 12 years Aaron Marcuse-Kubitza README.TXT: Data import: After import, removed ...
map 989 Bytes 5158 over 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
5967 11/02/2012 03:35 PM Aaron Marcuse-Kubitza

sql.py: run_query_into(): add_pkey_: Use add_pkey_or_index() instead of add_pkey(). This should prevent errors for input rows which match multiple output rows in VegBIEN.

5966 11/02/2012 03:24 PM Aaron Marcuse-Kubitza

README.TXT: Data import: After import, removed steps to reinstall tnrs_accepted, tnrs_other because this would overwrite the versions of these staging tables that were used to build the current version of the database. (The backup should store a snapshot of the database's input data as it was used to build the database.) Note that these tables will still be reinstalled when the next import starts.

5965 11/02/2012 02:54 PM Aaron Marcuse-Kubitza

Added validation/BIEN2_Analytical_DB_overview.docx

5964 11/02/2012 02:54 PM Aaron Marcuse-Kubitza

inputs/import.stats.xls: Updated import times

5963 11/02/2012 12:00 PM Aaron Marcuse-Kubitza

inputs/.TNRS/tnrs_*/create.sql: Fixed bug where need to COALESCE the WHERE condition with false to ensure that a boolean value, not NULL, is negated by NOT. Otherwise, tnrs_other's query would exclude rows for which the condition returned NULL rather than false.

5962 11/02/2012 11:43 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: make_analytical_db(): Truncate tables before (re-)populating them in case make_analytical_db() has already been run

5961 11/02/2012 11:40 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: Updated to use reference instead of party to store the datasource name

5960 11/02/2012 11:28 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: Renamed make_analytical_stem() back to make_analytical_db()

5959 11/01/2012 10:52 AM Aaron Marcuse-Kubitza

import_all: After starting geoscrub import in the background, wait for make commands to scroll by before starting NCBI import

5958 11/01/2012 10:39 AM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: matched place: Also map verbatim place's geoscrub-related fields to the matched place, to link up with geoscrub's corresponding input place

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