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Revision 602

Added by Aaron Marcuse-Kubitza almost 13 years ago

VegX-VegBIEN mapping: Took advantage of userdefined.userdefinedtype being optional

View differences:

test/accepted_output/SALVIAS.organisms.VegBIEN.xml
52 52 
                    <userdefined>
53 53 
                        <tablename>taxondetermination</tablename>
54 54 
                        <userdefinedname>censusNo</userdefinedname>
55 
                        <userdefinedtype>varchar</userdefinedtype>
56 55 
                    </userdefined>
57 56 
                </userdefined_id>
58 57 
                <definedvalue>1</definedvalue>
......
62 61 
                    <userdefined>
63 62 
                        <tablename>taxondetermination</tablename>
64 63 
                        <userdefinedname>habit</userdefinedname>
65 
                        <userdefinedtype>varchar</userdefinedtype>
66 64 
                    </userdefined>
67 65 
                </userdefined_id>
68 66 
                <definedvalue>T</definedvalue>
......
74 72 
                    <userdefined>
75 73 
                        <tablename>taxondetermination</tablename>
76 74 
                        <userdefinedname>individualCode</userdefinedname>
77 
                        <userdefinedtype>varchar</userdefinedtype>
78 75 
                    </userdefined>
79 76 
                </userdefined_id>
80 77 
                <definedvalue>10</definedvalue>
......
250 247 
                    <userdefined>
251 248 
                        <tablename>taxondetermination</tablename>
252 249 
                        <userdefinedname>censusNo</userdefinedname>
253 
                        <userdefinedtype>varchar</userdefinedtype>
254 250 
                    </userdefined>
255 251 
                </userdefined_id>
256 252 
                <definedvalue>1</definedvalue>
......
260 256 
                    <userdefined>
261 257 
                        <tablename>taxondetermination</tablename>
262 258 
                        <userdefinedname>habit</userdefinedname>
263 
                        <userdefinedtype>varchar</userdefinedtype>
264 259 
                    </userdefined>
265 260 
                </userdefined_id>
266 261 
                <definedvalue>T</definedvalue>
......
272 267 
                    <userdefined>
273 268 
                        <tablename>taxondetermination</tablename>
274 269 
                        <userdefinedname>individualCode</userdefinedname>
275 
                        <userdefinedtype>varchar</userdefinedtype>
276 270 
                    </userdefined>
277 271 
                </userdefined_id>
278 272 
                <definedvalue>100</definedvalue>
test/accepted_output/SALVIAS_db.plots.VegBIEN.xml
52 52 
                <userdefined>
53 53 
                    <tablename>locationevent</tablename>
54 54 
                    <userdefinedname>precipitationMm</userdefinedname>
55 
                    <userdefinedtype>varchar</userdefinedtype>
56 55 
                </userdefined>
57 56 
            </userdefined_id>
58 57 
            <definedvalue>2500.0</definedvalue>
......
111 110 
                <userdefined>
112 111 
                    <tablename>locationevent</tablename>
113 112 
                    <userdefinedname>precipitationMm</userdefinedname>
114 
                    <userdefinedtype>varchar</userdefinedtype>
115 113 
                </userdefined>
116 114 
            </userdefined_id>
117 115 
            <definedvalue>866.0</definedvalue>
......
121 119 
                <userdefined>
122 120 
                    <tablename>locationevent</tablename>
123 121 
                    <userdefinedname>temperatureC</userdefinedname>
124 
                    <userdefinedtype>varchar</userdefinedtype>
125 122 
                </userdefined>
126 123 
            </userdefined_id>
127 124 
            <definedvalue>7.4</definedvalue>
test/accepted_output/SALVIAS_db.organisms.VegBIEN.xml
29 29 
                    <userdefined>
30 30 
                        <tablename>taxondetermination</tablename>
31 31 
                        <userdefinedname>censusNo</userdefinedname>
32 
                        <userdefinedtype>varchar</userdefinedtype>
33 32 
                    </userdefined>
34 33 
                </userdefined_id>
35 34 
                <definedvalue>1</definedvalue>
......
39 38 
                    <userdefined>
40 39 
                        <tablename>taxondetermination</tablename>
41 40 
                        <userdefinedname>determinationType</userdefinedname>
42 
                        <userdefinedtype>varchar</userdefinedtype>
43 41 
                    </userdefined>
44 42 
                </userdefined_id>
45 43 
                <definedvalue>direct</definedvalue>
......
49 47 
                    <userdefined>
50 48 
                        <tablename>taxondetermination</tablename>
51 49 
                        <userdefinedname>habit</userdefinedname>
52 
                        <userdefinedtype>varchar</userdefinedtype>
53 50 
                    </userdefined>
54 51 
                </userdefined_id>
55 52 
                <definedvalue>T</definedvalue>
......
61 58 
                    <userdefined>
62 59 
                        <tablename>taxondetermination</tablename>
63 60 
                        <userdefinedname>individualCode</userdefinedname>
64 
                        <userdefinedtype>varchar</userdefinedtype>
65 61 
                    </userdefined>
66 62 
                </userdefined_id>
67 63 
                <definedvalue>1</definedvalue>
......
241 237 
                    <userdefined>
242 238 
                        <tablename>taxondetermination</tablename>
243 239 
                        <userdefinedname>censusNo</userdefinedname>
244 
                        <userdefinedtype>varchar</userdefinedtype>
245 240 
                    </userdefined>
246 241 
                </userdefined_id>
247 242 
                <definedvalue>1</definedvalue>
......
251 246 
                    <userdefined>
252 247 
                        <tablename>taxondetermination</tablename>
253 248 
                        <userdefinedname>determinationType</userdefinedname>
254 
                        <userdefinedtype>varchar</userdefinedtype>
255 249 
                    </userdefined>
256 250 
                </userdefined_id>
257 251 
                <definedvalue>direct</definedvalue>
......
261 255 
                    <userdefined>
262 256 
                        <tablename>taxondetermination</tablename>
263 257 
                        <userdefinedname>habit</userdefinedname>
264 
                        <userdefinedtype>varchar</userdefinedtype>
265 258 
                    </userdefined>
266 259 
                </userdefined_id>
267 260 
                <definedvalue>T</definedvalue>
......
273 266 
                    <userdefined>
274 267 
                        <tablename>taxondetermination</tablename>
275 268 
                        <userdefinedname>individualCode</userdefinedname>
276 
                        <userdefinedtype>varchar</userdefinedtype>
277 269 
                    </userdefined>
278 270 
                </userdefined_id>
279 271 
                <definedvalue>2</definedvalue>
test/accepted_output/NYBG.organisms.VegBIEN.xml
50 50 
                            <userdefined>
51 51 
                                <tablename>stem</tablename>
52 52 
                                <userdefinedname>habitat</userdefinedname>
53 
                                <userdefinedtype>varchar</userdefinedtype>
54 53 
                            </userdefined>
55 54 
                        </userdefined_id>
56 55 
                        <definedvalue>Floodplain forest</definedvalue>
......
60 59 
                            <userdefined>
61 60 
                                <tablename>stem</tablename>
62 61 
                                <userdefinedname>plantFungusDescription</userdefinedname>
63 
                                <userdefinedtype>varchar</userdefinedtype>
64 62 
                            </userdefined>
65 63 
                        </userdefined_id>
66 64 
                        <definedvalue>with rough brown bark, almost no buttressing, 1 m diam; fallen fruit and leaves</definedvalue>
inputs/SALVIAS/maps/VegBIEN.stems.csv
2 2 
PlotObsID,/*_id/individualplant/authorplantcode,
3 3 
stem_tag2,/authorstemcode/_alt/1,
4 4 
stem_tag1,/authorstemcode/_alt/2,
5 
basal_diam,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
6 
NoInd,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=count]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
7 
gentry_dbh,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=gentryDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
8 
stem_notes,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=notes]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
9 
stem_canopy_form,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyForm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
10 
stem_canopy_position,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyPosition]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
11 
stem_height_first_branch_m,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemHeightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
12 
stem_liana_infestation,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemLianaInfestation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
5 
basal_diam,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue",
6 
NoInd,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=count]]:[@fkey=tableRecord_ID]/definedvalue",
7 
gentry_dbh,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue",
8 
stem_notes,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue",
9 
stem_canopy_form,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyForm]]:[@fkey=tableRecord_ID]/definedvalue",
10 
stem_canopy_position,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",
11 
stem_height_first_branch_m,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemHeightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue",
12 
stem_liana_infestation,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemLianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",
13 13 
stem_dbh,/diameter,
14 14 
stem_height_m,/height,
inputs/SALVIAS/maps/VegBIEN.plots.csv
16 16 
PlotID,/authoreventcode/_alt/1,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
17 17 
life_zone_code,/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
18 18 
life_zone,/commclass/commdetermination/*_id/commconcept/commdescription,
19 
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
20 
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
19 
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue",
20 
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue",
21 21 
PlotMethod,/methodnarrative,
22 22 
date_finish,/obsenddate/_date/date,
23 23 
date_start,/obsstartdate/_date/date,
24 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
25 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
26 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
27 
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
28 
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
29 
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
30 
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
31 
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
32 
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
33 
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
34 
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
24 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
25 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
26 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
27 
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
28 
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
29 
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
30 
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
31 
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
32 
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
33 
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
34 
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
35 35 
clay_percent,/soilobs:[soilhorizon=unknown]/soilclay,
36 36 
organic_percent,/soilobs:[soilhorizon=unknown]/soilorganic,
37 37 
pH,/soilobs:[soilhorizon=unknown]/soilph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
inputs/SALVIAS/maps/VegBIEN.organisms.csv
2 2 
PlotID,/*_id/locationevent/authoreventcode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
3 3 
NoInd,/aggregateoccurrence/count/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
4 4 
cover_percent,/aggregateoccurrence/cover,
5 
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
5 
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
6 6 
height_m,/aggregateoccurrence/individualplant/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
7 7 
tag2,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
8 8 
tag1,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
9 
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
9 
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
10 10 
temp_dbh,/aggregateoccurrence/individualplant/stem/diameter,
11 11 
x_position,/aggregateoccurrence/individualplant/stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
12 12 
y_position,/aggregateoccurrence/individualplant/stem/yposition,Brad: See comment above for x_position
......
14 14 
census_date,/specimen:[*_id/reference]/collectiondate/_date/date,
15 15 
coll_firstname,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
16 16 
coll_lastname,/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
17 
census_no,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
18 
cfaff,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
19 
DetType,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
20 
Habit,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 
Ind,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
17 
census_no,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
18 
cfaff,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
19 
DetType,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
20 
Habit,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 
Ind,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
22 22 
Notes,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/notes",
23 23 
auth,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
24 24 
Family,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
mappings/SALVIAS_db-VegBIEN.organisms.csv
2 2 
PlotID,/*_id/locationevent/authoreventcode/_alt/1,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
3 3 
NoInd,/aggregateoccurrence/count/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
4 4 
cover_percent,/aggregateoccurrence/cover,
5 
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
5 
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
6 6 
height_m,/aggregateoccurrence/individualplant/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
7 7 
tag2,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
8 8 
tag1,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
9 
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
9 
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
10 10 
temp_dbh,/aggregateoccurrence/individualplant/stem/diameter,
11 11 
x_position,/aggregateoccurrence/individualplant/stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
12 12 
y_position,/aggregateoccurrence/individualplant/stem/yposition,Brad: See comment above for x_position
......
14 14 
census_date,/specimen:[*_id/reference]/collectiondate/_date/date,
15 15 
coll_firstname,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
16 16 
coll_lastname,/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
17 
census_no,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
18 
cfaff,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
19 
DetType,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
20 
Habit,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 
Ind,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
17 
census_no,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
18 
cfaff,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
19 
DetType,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
20 
Habit,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
21 
Ind,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
22 22 
Notes,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/notes",
23 23 
auth,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
24 24 
Family,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
mappings/VegX-VegBIEN.plots.csv
20 20 
/simpleUserdefined[name=authorCode]/value,/authoreventcode/_alt/1
21 21 
->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName,/commclass/commdetermination/*_id/commconcept/*_id/*/commname
22 22 
->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name,/commclass/commdetermination/*_id/commconcept/commdescription
23 
/simpleUserdefined[name=precipMm]/value,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
24 
/temperature,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
23 
/simpleUserdefined[name=precipMm]/value,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue"
24 
/temperature,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue"
25 25 
/simpleUserdefined[name=plotMethodology]/value,/methodnarrative
26 26 
/obsEndDate,/obsenddate
27 27 
/obsEndDate/_date/date,/obsenddate/_date/date
......
30 30 
/obsStartDate/_date/day,/obsstartdate/_date/day
31 31 
/obsStartDate/_date/month,/obsstartdate/_date/month
32 32 
/obsStartDate/_date/year,/obsstartdate/_date/year
33 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
34 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
35 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
36 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
37 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
38 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
39 
->/*s/abioticObservation[*ID]/magnesium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
40 
->/*s/abioticObservation[*ID]/nitrogen,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
41 
->/*s/abioticObservation[*ID]/phosphorus,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
42 
->/*s/abioticObservation[*ID]/pottasium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
43 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
33 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue"
34 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue"
35 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue"
36 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue"
37 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue"
38 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue"
39 
->/*s/abioticObservation[*ID]/magnesium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue"
40 
->/*s/abioticObservation[*ID]/nitrogen,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue"
41 
->/*s/abioticObservation[*ID]/phosphorus,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue"
42 
->/*s/abioticObservation[*ID]/pottasium,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue"
43 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue"
44 44 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=clayPercent]/value,/soilobs:[soilhorizon=unknown]/soilclay
45 45 
->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value,/soilobs:[soilhorizon=unknown]/soilorganic
46 46 
->/*s/abioticObservation[*ID]/ph,/soilobs:[soilhorizon=unknown]/soilph
mappings/VegX-VegBIEN.organisms.csv
20 20 
/*ID->/*s/plotObservation/simpleUserdefined[name=authorCode]/value,/*_id/locationevent/authoreventcode/_alt/1
21 21 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname
22 22 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription
23 
/*ID->/*s/plotObservation/simpleUserdefined[name=precipMm]/value,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
24 
/*ID->/*s/plotObservation/temperature,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
23 
/*ID->/*s/plotObservation/simpleUserdefined[name=precipMm]/value,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue"
24 
/*ID->/*s/plotObservation/temperature,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue"
25 25 
/*ID->/*s/plotObservation/simpleUserdefined[name=plotMethodology]/value,/*_id/locationevent/methodnarrative
26 26 
/*ID->/*s/plotObservation/obsEndDate,/*_id/locationevent/obsenddate
27 27 
/*ID->/*s/plotObservation/obsEndDate/_date/date,/*_id/locationevent/obsenddate/_date/date
......
30 30 
/*ID->/*s/plotObservation/obsStartDate/_date/day,/*_id/locationevent/obsstartdate/_date/day
31 31 
/*ID->/*s/plotObservation/obsStartDate/_date/month,/*_id/locationevent/obsstartdate/_date/month
32 32 
/*ID->/*s/plotObservation/obsStartDate/_date/year,/*_id/locationevent/obsstartdate/_date/year
33 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
34 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
35 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
36 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
37 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
38 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
39 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
40 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
41 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
42 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
43 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
33 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=acidity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue"
34 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=base]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue"
35 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=calcium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue"
36 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=carbon]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue"
37 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=cationCap]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue"
38 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=conductivity]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue"
39 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/magnesium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue"
40 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/nitrogen,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue"
41 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/phosphorus,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue"
42 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/pottasium,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue"
43 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=sodium]/value,"/*_id/locationevent/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue"
44 44 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=clayPercent]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilclay
45 45 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/simpleUserdefined[name=organicPercent]/value,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilorganic
46 46 
/*ID->/*s/plotObservation->/*s/abioticObservation[*ID]/ph,/*_id/locationevent/soilobs:[soilhorizon=unknown]/soilph
......
52 52 
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/plotUniqueIdentifier,"/*_id/locationevent/{*_id/location:[confidentialitystatus=0]/authorlocationcode/_alt/2,authoreventcode/_alt/2}"
53 53 
/simpleUserdefined[name=count]/value,/aggregateoccurrence/count/_alt/1
54 54 
/simpleUserdefined[name=coverPercent]/value,/aggregateoccurrence/cover
55 
/simpleUserdefined[name=interceptCm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
55 
/simpleUserdefined[name=interceptCm]/value,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue"
56 56 
/height,/aggregateoccurrence/individualplant/overallheight
57 57 
/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/individualplant/overallheight
58 58 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/relatedItem[relationshipType=stemParent]/relatedItemID->/*s/individualOrganismObservation/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,/aggregateoccurrence/individualplant/stem/*_id/individualplant/authorplantcode
......
62 62 
/*ID->/*s/individualOrganism/identificationLabel/_alt/1,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/1
63 63 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/2
64 64 
/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/2
65 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
66 
/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
67 
/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyForm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
68 
/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyPosition]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
69 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=count]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=count]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
70 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=gentryDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
71 
/simpleUserdefined[name=habitat]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=habitat]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
72 
/simpleUserdefined[name=htFirstBranchM]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
73 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
74 
/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=lianaInfestation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
75 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=notes]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
76 
/simpleUserdefined[name=plantFungusDescription]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=plantFungusDescription]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
77 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyForm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
78 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyPosition]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
79 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemHeightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
80 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemLianaInfestation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
81 
/simpleUserdefined[name=substrate]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=substrate]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
82 
/simpleUserdefined[name=vegetation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
65 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
66 
/diameterBaseDistance[baseDistance/value=0]/diameter,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
67 
/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue"
68 
/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
69 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=count]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=count]]:[@fkey=tableRecord_ID]/definedvalue"
70 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
71 
/simpleUserdefined[name=habitat]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue"
72 
/simpleUserdefined[name=htFirstBranchM]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
73 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
74 
/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
75 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue"
76 
/simpleUserdefined[name=plantFungusDescription]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=plantFungusDescription]]:[@fkey=tableRecord_ID]/definedvalue"
77 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyForm]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyForm]]:[@fkey=tableRecord_ID]/definedvalue"
78 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemCanopyPosition]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
79 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemHeightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
80 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemLianaInfestation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemLianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
81 
/simpleUserdefined[name=substrate]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=substrate]]:[@fkey=tableRecord_ID]/definedvalue"
82 
/simpleUserdefined[name=vegetation]/value,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]]:[@fkey=tableRecord_ID]/definedvalue"
83 83 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/diameterBaseDistance[baseDistance[!complexUserDefined/method]/value=1.37]/diameter,/aggregateoccurrence/individualplant/stem/diameter
84 84 
/diameterBaseDistance[baseDistance/value=1.37]/diameter,/aggregateoccurrence/individualplant/stem/diameter
85 85 
->/*s/individualOrganismObservation[relatedItem[relationshipType=stemParent]/relatedItemID]/simpleUserdefined[name=stemHeightM]/value,/aggregateoccurrence/individualplant/stem/height
......
95 95 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,"/specimen:[*_id/reference]/{museum_id/party/organizationname,collectioncode_dwc/_namePart/last}"
96 96 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/first,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first}
97 97 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/last,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}"
98 
/simpleUserdefined[name=censusNo]/value,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
99 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
100 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
101 
/simpleUserdefined[name=habit]/value,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
102 
/*ID->/*s/individualOrganism/simpleUserdefined[name=sex]/value,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
103 
/simpleUserdefined[name=individualCode]/value,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
98 
/simpleUserdefined[name=censusNo]/value,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue"
99 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue"
100 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]]:[@fkey=tableRecord_ID]/definedvalue"
101 
/simpleUserdefined[name=habit]/value,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue"
102 
/*ID->/*s/individualOrganism/simpleUserdefined[name=sex]/value,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue"
103 
/simpleUserdefined[name=individualCode]/value,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue"
104 104 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/notes"
105 105 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1"
106 106 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
mappings/NYBG-VegBIEN.organisms.csv
14 14 
YearCollected,/*_id/locationevent/obsstartdate/_date/year,
15 15 
MaximumDepth,/*_id/locationevent/waterdepth/max,
16 16 
MinimumDepth,/*_id/locationevent/waterdepth/min,
17 
Habitat,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=habitat]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
18 
PlantFungusDescription,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=plantFungusDescription]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect mapping to VB, also possibly to VX;  this is the specimenDescription field, as used by this institution (NOT a standard DwC element). Very important! Bob, Nick, where would this go in VB and VX?"
19 
Substrate,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=substrate]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect mapping to VB and VX; refers to geological substrate or soils where specimen collected. Often concatenated with habitat, or included with specimen description. Bob, Nick, is there an element for this in VB/VX, or shall we just use userDefined?"
20 
Vegetation,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Habitat'. Bob, Nick: keep as user defined or create special element?"
17 
Habitat,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=habitat]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
18 
PlantFungusDescription,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=plantFungusDescription]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect mapping to VB, also possibly to VX;  this is the specimenDescription field, as used by this institution (NOT a standard DwC element). Very important! Bob, Nick, where would this go in VB and VX?"
19 
Substrate,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=substrate]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect mapping to VB and VX; refers to geological substrate or soils where specimen collected. Often concatenated with habitat, or included with specimen description. Bob, Nick, is there an element for this in VB/VX, or shall we just use userDefined?"
20 
Vegetation,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=vegetation]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Habitat'. Bob, Nick: keep as user defined or create special element?"
21 21 
FieldNumber,/specimen:[*_id/reference]/catalognumber_dwc,"Brad: Correct for VB, not sure about VX; Nick, is there an element in VX fo Collection Number?"
22 22 
Collector,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Correct for VB. Nick: is there a way to specifically identify this party as collector of a specimen?
23 23 
CollectorNumber,/specimen:[*_id/reference]/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX"
24 24 
InstitutionCode,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first},
25 25 
CollectionCode,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
26 
Sex,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
26 
Sex,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
27 27 
Notes,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes"
28 28 
ScientificName,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?"
29 29 
DayIdentified,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day",
mappings/SALVIAS-VegBIEN.plots.csv
15 15 
project,/*_id/project/projectname,
16 16 
life_zone_code,/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
17 17 
holdridge_life_zone,/commclass/commdetermination/*_id/commconcept/commdescription,
18 
precip_mm,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
19 
temp_c,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
18 
precip_mm,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue",
19 
temp_c,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue",
20 20 
plot_methodology,/methodnarrative,
21 21 
date_finish,/obsenddate/_date/date,
22 22 
date_start,/obsstartdate/_date/date,
23 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
24 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
25 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
26 
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
27 
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
28 
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
29 
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
30 
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
31 
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
32 
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
33 
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
23 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
24 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
25 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
26 
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
27 
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
28 
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
29 
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
30 
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
31 
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
32 
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
33 
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
34 34 
clay_percent,/soilobs:[soilhorizon=unknown]/soilclay,
35 35 
organic_percent,/soilobs:[soilhorizon=unknown]/soilorganic,
36 36 
pH,/soilobs:[soilhorizon=unknown]/soilph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
mappings/SALVIAS-VegBIEN.organisms.csv
4 4 
subplot,"/*_id/locationevent/{*_id/location:[confidentialitystatus=0]/authorlocationcode/_alt/2,authoreventcode/_alt/2}",
5 5 
no_of_individuals,/aggregateoccurrence/count/_alt/1,"Brad: Incorrect for VegX. This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
6 6 
cover_percent,/aggregateoccurrence/cover,
7 
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
7 
intercept_cm,"/aggregateoccurrence/definedvalue[*_id/userdefined[tablename=aggregateoccurrence,userdefinedname=interceptCm]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank This is an aggregate observation. Used in line-intercept methodology only, describes the point along centerline at which an individual intercepts the center line of the plot. Used to determin relative abundance."
8 8 
height_m,/aggregateoccurrence/individualplant/overallheight,Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
9 9 
stem_height_m,/aggregateoccurrence/individualplant/overallheight,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
10 10 
stem_tag1,/aggregateoccurrence/individualplant/stem/authorstemcode,"Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
11 11 
stem_tag2,/aggregateoccurrence/individualplant/stem/authorstemcode,Brad: see above
12 12 
tag2,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/1,"Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
13 13 
tag1,/aggregateoccurrence/individualplant/stem/authorstemcode/_alt/2,"Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
14 
basal_diam,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
15 
stem_canopy_form,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyForm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
16 
stem_canopy_position,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyPosition]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
17 
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
18 
stem_height_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Should also be userDefined for VegBank. Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
19 
stem_liana_infestation,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=lianaInfestation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
14 
basal_diam,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue",
15 
stem_canopy_form,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyForm]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
16 
stem_canopy_position,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=canopyPosition]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
17 
ht_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Incorrect for VegBank. This is a measurement applied to a single tree. Check with Bob
18 
stem_height_first_branch_m,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=heightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Should also be userDefined for VegBank. Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
19 
stem_liana_infestation,"/aggregateoccurrence/individualplant/stem/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=lianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue",Brad: Should also be userDefined for VegBank.
20 20 
stem_dbh,/aggregateoccurrence/individualplant/stem/diameter,
21 21 
x_position,/aggregateoccurrence/individualplant/stem/xposition,"Brad: Correct for VegBank. I'm not so sure for VegX. Let's ask Nick about this. These are important, fundamental values of many tree plots, and should be accommodated within VegX."
22 22 
y_position,/aggregateoccurrence/individualplant/stem/yposition,Brad: See comment above for x_position
23 23 
coll_number,/specimen:[*_id/reference]/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string
24 24 
coll_firstname,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
25 25 
coll_lastname,/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
26 
census_no,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
27 
cf_aff,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
28 
det_type,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
29 
habit,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
30 
individual_code,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
26 
census_no,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=censusNo]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
27 
cf_aff,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
28 
det_type,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=determinationType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
29 
habit,"/taxondetermination[role_id/role/rolecode=collector]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=habit]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Incorrect for VegBank, correct for VegX. This is growth form (tree, shrub, herb, etc.). It is an observation of a trait."
30 
individual_code,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
31 31 
notes,"/taxondetermination[role_id/role/rolecode=collector]:[determinationtype=Author,currentdetermination=true]/notes",
32 32 
specific_authority,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
33 33 
family,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
mappings/VegX-VegBIEN.stems.csv
3 3 
/*ID->/*s/individualOrganism/identificationLabel,/authorstemcode
4 4 
/*ID->/*s/individualOrganism/identificationLabel/_alt/1,/authorstemcode/_alt/1
5 5 
/*ID->/*s/individualOrganism/identificationLabel/_alt/2,/authorstemcode/_alt/2
6 
/diameterBaseDistance[baseDistance/value=0]/diameter,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
7 
/simpleUserdefined[name=count]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=count]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
8 
/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=gentryDiameter]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
9 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=notes]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
10 
/simpleUserdefined[name=stemCanopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyForm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
11 
/simpleUserdefined[name=stemCanopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyPosition]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
12 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemHeightFirstBranchM]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
13 
/simpleUserdefined[name=stemLianaInfestation]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemLianaInfestation]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue"
6 
/diameterBaseDistance[baseDistance/value=0]/diameter,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=basalDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
7 
/simpleUserdefined[name=count]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=count]]:[@fkey=tableRecord_ID]/definedvalue"
8 
/diameterBaseDistance[baseDistance[complexUserDefined/method=Gentry]/value=1.37]/diameter,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=gentryDiameter]]:[@fkey=tableRecord_ID]/definedvalue"
9 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=notes]]:[@fkey=tableRecord_ID]/definedvalue"
10 
/simpleUserdefined[name=stemCanopyForm]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyForm]]:[@fkey=tableRecord_ID]/definedvalue"
11 
/simpleUserdefined[name=stemCanopyPosition]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemCanopyPosition]]:[@fkey=tableRecord_ID]/definedvalue"
12 
/simpleUserdefined[name=stemHeightFirstBranchM]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemHeightFirstBranchM]]:[@fkey=tableRecord_ID]/definedvalue"
13 
/simpleUserdefined[name=stemLianaInfestation]/value,"/definedvalue[*_id/userdefined[tablename=stem,userdefinedname=stemLianaInfestation]]:[@fkey=tableRecord_ID]/definedvalue"
14 14 
/diameterBaseDistance[baseDistance[!complexUserDefined/method]/value=1.37]/diameter,/diameter
15 15 
/simpleUserdefined[name=stemHeightM]/value,/height
mappings/SALVIAS_db-VegBIEN.plots.csv
16 16 
PlotID,/authoreventcode/_alt/1,"Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
17 17 
life_zone_code,/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
18 18 
life_zone,/commclass/commdetermination/*_id/commconcept/commdescription,
19 
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
20 
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
19 
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue",
20 
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue",
21 21 
PlotMethod,/methodnarrative,
22 22 
date_finish,/obsenddate/_date/date,
23 23 
date_start,/obsstartdate/_date/date,
24 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
25 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
26 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
27 
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
28 
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
29 
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
30 
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
31 
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
32 
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
33 
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
34 
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]:[userdefinedtype=varchar]]:[@fkey=tableRecord_ID]/definedvalue",
24 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
25 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
26 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
27 
soil_C,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCarbon]]:[@fkey=tableRecord_ID]/definedvalue",
28 
soil_cation_cap,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCationCap]]:[@fkey=tableRecord_ID]/definedvalue",
29 
soil_conductivity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilConductivity]]:[@fkey=tableRecord_ID]/definedvalue",
30 
soil_Mg,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilMagnesium]]:[@fkey=tableRecord_ID]/definedvalue",
31 
soil_N,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilNitrogen]]:[@fkey=tableRecord_ID]/definedvalue",
32 
soil_P,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPhosphorus]]:[@fkey=tableRecord_ID]/definedvalue",
33 
soil_K,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilPotassium]]:[@fkey=tableRecord_ID]/definedvalue",
34 
soil_Na,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilSodium]]:[@fkey=tableRecord_ID]/definedvalue",
35 35 
clay_percent,/soilobs:[soilhorizon=unknown]/soilclay,
36 36 
organic_percent,/soilobs:[soilhorizon=unknown]/soilorganic,
37 37 
pH,/soilobs:[soilhorizon=unknown]/soilph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."

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