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Revision 612

Added by Aaron Marcuse-Kubitza almost 13 years ago

mappings/Makefile: Run simplify_xpath on VegX-VegBIEN.organisms.csv

View differences:

inputs/SALVIAS/maps/VegBIEN.plots.csv
20 20 
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue",
21 21 
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue",
22 22 
PlotMethod,/methodnarrative,
23 
date_finish,/obsenddate/_date/date,
24 
date_start,/obsstartdate/_date/date,
23 
date_finish,/obsenddate/_*/date,
24 
date_start,/obsstartdate/_*/date,
25 25 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
26 26 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
27 27 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
inputs/SALVIAS/maps/VegBIEN.organisms.csv
15 15 
Ind,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
16 16 
DetType,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
17 17 
coll_number,/specimen:[*_id/reference]/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string
18 
census_date,/specimen:[*_id/reference]/collectiondate/_date/date,
18 
census_date,/specimen:[*_id/reference]/collectiondate/_*/date,
19 19 
coll_firstname,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
20 20 
coll_lastname,/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
21 
auth,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
22 
Family,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
23 
Genus,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
24 
Species,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
25 
infra_rank_1,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first",
26 
infra_ep_1,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
27 
cfaff,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
28 
Notes,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
29 
OrigFamily,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
30 
OrigSpecies,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
21 
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
22 
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
23 
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
24 
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
25 
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first",
26 
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
27 
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
28 
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
29 
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
30 
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
31 31 
PlotObsID,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
mappings/SALVIAS_db-VegBIEN.organisms.csv
15 15 
Ind,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
16 16 
DetType,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
17 17 
coll_number,/specimen:[*_id/reference]/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string
18 
census_date,/specimen:[*_id/reference]/collectiondate/_date/date,
18 
census_date,/specimen:[*_id/reference]/collectiondate/_*/date,
19 19 
coll_firstname,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
20 20 
coll_lastname,/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
21 
auth,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
22 
Family,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
23 
Genus,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
24 
Species,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
25 
infra_rank_1,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first",
26 
infra_ep_1,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
27 
cfaff,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
28 
Notes,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
29 
OrigFamily,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
30 
OrigSpecies,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
21 
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
22 
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
23 
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
24 
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
25 
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first",
26 
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
27 
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
28 
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
29 
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
30 
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
31 31 
PlotObsID,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
mappings/VegX-VegBIEN.plots.csv
19 19 
/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}"
20 20 
/*ID->/*s/project/title,/*_id/project/projectname
21 21 
/simpleUserdefined[name=authorCode]/value,/authoreventcode
22 
->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName,/commclass/commdetermination/*_id/commconcept/*_id/*/commname
23 
->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name,/commclass/commdetermination/*_id/commconcept/commdescription
22 
->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/commclass/commdetermination/*_id/commconcept/*_id/*/commname
23 
->/*s/communityDetermination[*ID]/*s/communityConcept/name,/commclass/commdetermination/*_id/commconcept/commdescription
24 24 
/simpleUserdefined[name=precipMm]/value,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue"
25 25 
/temperature,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue"
26 26 
/simpleUserdefined[name=plotMethodology]/value,/methodnarrative
27 27 
/obsEndDate,/obsenddate
28 
/obsEndDate/_date/date,/obsenddate/_date/date
28 
/obsEndDate/_*/date,/obsenddate/_*/date
29 29 
/obsStartDate,/obsstartdate
30 
/obsStartDate/_date/date,/obsstartdate/_date/date
30 
/obsStartDate/_*/date,/obsstartdate/_*/date
31 31 
/obsStartDate/_date/day,/obsstartdate/_date/day
32 32 
/obsStartDate/_date/month,/obsstartdate/_date/month
33 33 
/obsStartDate/_date/year,/obsstartdate/_date/year
mappings/VegX-VegBIEN.organisms.csv
19 19 
/*ID->/*s/plotObservation/*UniqueIdentifierID->/*s/plot/geospatial/minimumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}"
20 20 
/*ID->/*s/plotObservation/*ID->/*s/project/title,/*_id/locationevent/*_id/project/projectname
21 21 
/*ID->/*s/plotObservation/simpleUserdefined[name=authorCode]/value,/*_id/locationevent/authoreventcode
22 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname
23 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription
22 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/commonName,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname
23 
/*ID->/*s/plotObservation->/*s/communityDetermination[*ID]/*s/communityConcept/name,/*_id/locationevent/commclass/commdetermination/*_id/commconcept/commdescription
24 24 
/*ID->/*s/plotObservation/simpleUserdefined[name=precipMm]/value,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue"
25 25 
/*ID->/*s/plotObservation/temperature,"/*_id/locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue"
26 26 
/*ID->/*s/plotObservation/simpleUserdefined[name=plotMethodology]/value,/*_id/locationevent/methodnarrative
27 27 
/*ID->/*s/plotObservation/obsEndDate,/*_id/locationevent/obsenddate
28 
/*ID->/*s/plotObservation/obsEndDate/_date/date,/*_id/locationevent/obsenddate/_date/date
28 
/*ID->/*s/plotObservation/obsEndDate/_*/date,/*_id/locationevent/obsenddate/_*/date
29 29 
/*ID->/*s/plotObservation/obsStartDate,/*_id/locationevent/obsstartdate
30 
/*ID->/*s/plotObservation/obsStartDate/_date/date,/*_id/locationevent/obsstartdate/_date/date
30 
/*ID->/*s/plotObservation/obsStartDate/_*/date,/*_id/locationevent/obsstartdate/_*/date
31 31 
/*ID->/*s/plotObservation/obsStartDate/_date/day,/*_id/locationevent/obsstartdate/_date/day
32 32 
/*ID->/*s/plotObservation/obsStartDate/_date/month,/*_id/locationevent/obsstartdate/_date/month
33 33 
/*ID->/*s/plotObservation/obsStartDate/_date/year,/*_id/locationevent/obsstartdate/_date/year
......
91 91 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/groupType","/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]:[@fkey=tableRecord_ID]/definedvalue"
92 92 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/authorCode,/specimen:[*_id/reference]/catalognumber_dwc
93 93 
/simpleUserdefined[name=collectionDate]/value,/specimen:[*_id/reference]/collectiondate
94 
/simpleUserdefined[name=collectionDate]/value/_date/date,/specimen:[*_id/reference]/collectiondate/_date/date
94 
/simpleUserdefined[name=collectionDate]/value/_*/date,/specimen:[*_id/reference]/collectiondate/_*/date
95 95 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/givenName","/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}"
96 96 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
97 97 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=collector]/partyWithRole/*ID->/parties/party/individualName/surName",/specimen:[*_id/reference]/collector_id/party/{surname}
......
99 99 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,"/specimen:[*_id/reference]/{museum_id/party/organizationname,collectioncode_dwc/_namePart/last}"
100 100 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/first,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first}
101 101 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/last,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}"
102 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
103 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
104 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
105 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
106 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first"
107 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last"
108 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue"
109 
/*ID->/*s/individualOrganism/simpleUserdefined[name=sex]/value,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue"
110 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/day","/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day"
111 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month","/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month"
112 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year","/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year"
113 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
114 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes"
115 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1"
116 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
117 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
118 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
119 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
120 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
121 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
122 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
123 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
124 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname"
102 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
103 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
104 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
105 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
106 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first"
107 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last"
108 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue"
109 
/*ID->/*s/individualOrganism/simpleUserdefined[name=sex]/value,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue"
110 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/day","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day"
111 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month"
112 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year"
113 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
114 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes"
115 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1"
116 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
117 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
118 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
119 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
120 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
121 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
122 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
123 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
124 
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname"
125 125 
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}"
mappings/SALVIAS-VegX.plots.csv
39 39 
"plot_methodology","/simpleUserdefined[name=plotMethodology]/value",
40 40 
"plot_area_ha","/*UniqueIdentifierID->/*s/plot/area","Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 41 
"recensused",,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
42 
"date_start","/obsStartDate/_date/date",
43 
"date_finish","/obsEndDate/_date/date",
42 
"date_start","/obsStartDate/_*/date",
43 
"date_finish","/obsEndDate/_*/date",
mappings/NYBG-VegBIEN.organisms.csv
23 23 
CollectorNumber,/specimen:[*_id/reference]/collectornumber_dwc,"Brad: OMIT; db-specific element, not relevant to VB/VX"
24 24 
InstitutionCode,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first},
25 25 
CollectionCode,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}",Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
26 
Sex,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
27 
DayIdentified,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day",
28 
MonthIdentified,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month",
29 
YearIdentified,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year",
30 
IdentifiedBy,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
31 
Notes,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes"
32 
ScientificName,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?"
33 
ScientificNameAuthor,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
34 
Class,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
35 
Family,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
36 
Genus,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
37 
Kingdom,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
38 
Order,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
39 
Species,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
40 
Phylum,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
41 
Subspecies,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname",
26 
Sex,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue","Brad: OMIT. Apparently not used by this institution and of uncertain applicability to plants. With other collections, *sometimes* used for phenological information (if specimen in flower, in fruit, sterile, etc.). If so, this is important information we should keep. Bob, Nick, anywhere for phenological information in VB and VX?; Aaron: Keeping it because it's useful for some collections"
27 
DayIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day",
28 
MonthIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month",
29 
YearIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year",
30 
IdentifiedBy,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
31 
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes"
32 
ScientificName,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?"
33 
ScientificNameAuthor,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
34 
Class,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
35 
Family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
36 
Genus,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
37 
Kingdom,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
38 
Order,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
39 
Species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
40 
Phylum,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
41 
Subspecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname",
42 42 
UniqueNYInternalRecordNumber,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key"
mappings/for_review/SALVIAS_db-VegBIEN.organisms.csv
15 15 
Ind,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=individualCode]]/definedvalue","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
16 16 
DetType,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]/definedvalue","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
17 17 
coll_number,//specimen/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string
18 
census_date,//specimen/collectiondate/_date/date,
18 
census_date,//specimen/collectiondate/_*/date,
19 19 
coll_firstname,"/specimen/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
20 20 
coll_lastname,/specimen/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
21 21 
auth,"/taxondetermination[rolecode=computer,plantlevel=Authority]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
mappings/for_review/VegX-VegBIEN.plots.csv
19 19 
//geospatial/minimumElevationInMeters,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}"
20 20 
//project/title,//project/projectname
21 21 
/simpleUserdefined[name=authorCode]/value,/authoreventcode
22 
//*s/communityDetermination/communityConcepts/communityConcept/commonName,//*/commname
23 
//*s/communityDetermination/communityConcepts/communityConcept/name,//commconcept/commdescription
22 
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname
23 
//*s/communityDetermination/*s/communityConcept/name,//commconcept/commdescription
24 24 
/simpleUserdefined[name=precipMm]/value,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]/definedvalue"
25 25 
/temperature,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]/definedvalue"
26 26 
/simpleUserdefined[name=plotMethodology]/value,/methodnarrative
27 27 
/obsEndDate,/obsenddate
28 
/obsEndDate/_date/date,/obsenddate/_date/date
28 
/obsEndDate/_*/date,/obsenddate/_*/date
29 29 
/obsStartDate,/obsstartdate
30 
/obsStartDate/_date/date,/obsstartdate/_date/date
30 
/obsStartDate/_*/date,/obsstartdate/_*/date
31 31 
/obsStartDate/_date/day,/obsstartdate/_date/day
32 32 
/obsStartDate/_date/month,/obsstartdate/_date/month
33 33 
/obsStartDate/_date/year,/obsstartdate/_date/year
mappings/for_review/VegX-VegBIEN.organisms.csv
19 19 
//geospatial/minimumElevationInMeters,"/*_id/locationevent/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}"
20 20 
//project/title,//project/projectname
21 21 
//plotObservation/simpleUserdefined[name=authorCode]/value,//locationevent/authoreventcode
22 
//*s/communityDetermination/communityConcepts/communityConcept/commonName,//*/commname
23 
//*s/communityDetermination/communityConcepts/communityConcept/name,//commconcept/commdescription
22 
//*s/communityDetermination/*s/communityConcept/commonName,//*/commname
23 
//*s/communityDetermination/*s/communityConcept/name,//commconcept/commdescription
24 24 
//plotObservation/simpleUserdefined[name=precipMm]/value,"//locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]/definedvalue"
25 25 
//plotObservation/temperature,"//locationevent/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]/definedvalue"
26 26 
//plotObservation/simpleUserdefined[name=plotMethodology]/value,//locationevent/methodnarrative
27 27 
//plotObservation/obsEndDate,//locationevent/obsenddate
28 
//plotObservation/obsEndDate/_date/date,//locationevent/obsenddate/_date/date
28 
//plotObservation/obsEndDate/_*/date,//locationevent/obsenddate/_*/date
29 29 
//plotObservation/obsStartDate,//locationevent/obsstartdate
30 
//plotObservation/obsStartDate/_date/date,//locationevent/obsstartdate/_date/date
30 
//plotObservation/obsStartDate/_*/date,//locationevent/obsstartdate/_*/date
31 31 
//plotObservation/obsStartDate/_date/day,//locationevent/obsstartdate/_date/day
32 32 
//plotObservation/obsStartDate/_date/month,//locationevent/obsstartdate/_date/month
33 33 
//plotObservation/obsStartDate/_date/year,//locationevent/obsstartdate/_date/year
......
91 91 
//*s/taxonDetermination[role=collector]/groupType,"/definedvalue[*_id/userdefined[tablename=taxonoccurrence,userdefinedname=voucherType]]/definedvalue"
92 92 
//taxonNameUsageConcept/authorCode,//specimen/catalognumber_dwc
93 93 
/simpleUserdefined[name=collectionDate]/value,//specimen/collectiondate
94 
/simpleUserdefined[name=collectionDate]/value/_date/date,//specimen/collectiondate/_date/date
94 
/simpleUserdefined[name=collectionDate]/value/_*/date,//specimen/collectiondate/_*/date
95 95 
//individualName/givenName,"/specimen/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}"
96 96 
"//parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/specimen/collector_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
97 97 
//individualName/surName,/specimen/collector_id/party/{surname}
mappings/for_review/SALVIAS-VegX.plots.csv
39 39 
plot_methodology,/simpleUserdefined[name=plotMethodology]/value,
40 40 
plot_area_ha,//plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 41 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
42 
date_start,/obsStartDate/_date/date,
43 
date_finish,/obsEndDate/_date/date,
42 
date_start,/obsStartDate/_*/date,
43 
date_finish,/obsEndDate/_*/date,
mappings/for_review/SALVIAS_db-VegX.plots.csv
52 52 
vegetation_1,,
53 53 
vegetation_2,,
54 54 
Habitat,,
55 
life_zone_code,//*s/communityDetermination/communityConcepts/communityConcept/commonName,
56 
life_zone,//*s/communityDetermination/communityConcepts/communityConcept/name,
55 
life_zone_code,//*s/communityDetermination/*s/communityConcept/commonName,
56 
life_zone,//*s/communityDetermination/*s/communityConcept/name,
57 57 
PlotMethod,/simpleUserdefined[name=plotMethodology]/value,
58 58 
MethodCode,,
59 59 
plot_area_ha,//plot/area,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60 60 
recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
61 
date_start,/obsStartDate/_date/date,
62 
date_finish,/obsEndDate/_date/date,
61 
date_start,/obsStartDate/_*/date,
62 
date_finish,/obsEndDate/_*/date,
63 63 
plot_administrator,,
64 64 
plot_notes,,
65 65 
tmp_del,,
mappings/for_review/SALVIAS-VegBIEN.plots.csv
14 14 
elev_max_m,"/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",
15 15 
elev_min_m,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",
16 16 
project,//project/projectname,
17 
life_zone_code,//*/commname,
18 
holdridge_life_zone,//commconcept/commdescription,
19 17 
precip_mm,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]/definedvalue",
20 18 
temp_c,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]/definedvalue",
21 19 
plot_methodology,/methodnarrative,
22 
date_finish,/obsenddate/_date/date,
23 
date_start,/obsstartdate/_date/date,
20 
date_finish,/obsenddate/_*/date,
21 
date_start,/obsstartdate/_*/date,
24 22 
soil_acidity,"//soilobs/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]/definedvalue",
25 23 
soil_base,"//soilobs/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]/definedvalue",
26 24 
soil_Ca,"//soilobs/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]/definedvalue",
mappings/for_review/SALVIAS_db-VegX.organisms.csv
3 3 
PlotID,//plotObservation/simpleUserdefined[name=authorCode]/value,"Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 4 
PlotCode,,"Brad: Same as plotCode, above"
5 5 
census_no,/simpleUserdefined[name=censusNo]/value,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
6 
census_date,/simpleUserdefined[name=collectionDate]/value/_date/date,
6 
census_date,/simpleUserdefined[name=collectionDate]/value/_*/date,
7 7 
OrigRecordID,,
8 8 
Line,,
9 9 
Ind,/simpleUserdefined[name=individualCode]/value,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
mappings/for_review/SALVIAS_db-VegBIEN.plots.csv
20 20 
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]/definedvalue",
21 21 
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]/definedvalue",
22 22 
PlotMethod,/methodnarrative,
23 
date_finish,/obsenddate/_date/date,
24 
date_start,/obsstartdate/_date/date,
23 
date_finish,/obsenddate/_*/date,
24 
date_start,/obsstartdate/_*/date,
25 25 
soil_acidity,"//soilobs/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]/definedvalue",
26 26 
soil_base,"//soilobs/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]/definedvalue",
27 27 
soil_Ca,"//soilobs/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]/definedvalue",
mappings/SALVIAS_db-VegX.plots.csv
52 52 
"vegetation_1",,
53 53 
"vegetation_2",,
54 54 
"Habitat",,
55 
"life_zone_code","->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/commonName",
56 
"life_zone","->/*s/communityDetermination[*ID]/communityConcepts/communityConcept/name",
55 
"life_zone_code","->/*s/communityDetermination[*ID]/*s/communityConcept/commonName",
56 
"life_zone","->/*s/communityDetermination[*ID]/*s/communityConcept/name",
57 57 
"PlotMethod","/simpleUserdefined[name=plotMethodology]/value",
58 58 
"MethodCode",,
59 59 
"plot_area_ha","/*UniqueIdentifierID->/*s/plot/area","Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
60 60 
"recensused",,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
61 
"date_start","/obsStartDate/_date/date",
62 
"date_finish","/obsEndDate/_date/date",
61 
"date_start","/obsStartDate/_*/date",
62 
"date_finish","/obsEndDate/_*/date",
63 63 
"plot_administrator",,
64 64 
"plot_notes",,
65 65 
"tmp_del",,
mappings/SALVIAS-VegBIEN.plots.csv
14 14 
elev_max_m,"/*_id/location/{elevation/_alt/2/_avg/max,elevationrange/_range/to}",
15 15 
elev_min_m,"/*_id/location/{elevation/_alt/2/_avg/min,elevationrange/_range/from}",
16 16 
project,/*_id/project/projectname,
17 
life_zone_code,/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
18 
holdridge_life_zone,/commclass/commdetermination/*_id/commconcept/commdescription,
19 17 
precip_mm,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue",
20 18 
temp_c,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue",
21 19 
plot_methodology,/methodnarrative,
22 
date_finish,/obsenddate/_date/date,
23 
date_start,/obsstartdate/_date/date,
20 
date_finish,/obsenddate/_*/date,
21 
date_start,/obsstartdate/_*/date,
24 22 
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",
25 23 
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",
26 24 
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",
mappings/SALVIAS_db-VegX.organisms.csv
3 3 
"PlotID","/*ID->/*s/plotObservation/simpleUserdefined[name=authorCode]/value","Brad: Not sure why this is repeated? This field and plotCode, as the same as above."
4 4 
"PlotCode",,"Brad: Same as plotCode, above"
5 5 
"census_no","/simpleUserdefined[name=censusNo]/value","Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
6 
"census_date","/simpleUserdefined[name=collectionDate]/value/_date/date",
6 
"census_date","/simpleUserdefined[name=collectionDate]/value/_*/date",
7 7 
"OrigRecordID",,
8 8 
"Line",,
9 9 
"Ind","/simpleUserdefined[name=individualCode]/value","Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
mappings/SALVIAS-VegBIEN.organisms.csv
27 27 
coll_number,/specimen:[*_id/reference]/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string
28 28 
coll_firstname,"/specimen:[*_id/reference]/collector_id/party/{givenname/_namePart/first,middlename/_namePart/last}",Brad: See comment above
29 29 
coll_lastname,/specimen:[*_id/reference]/collector_id/party/{surname},"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
30 
specific_authority,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
31 
family,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
32 
genus,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
33 
specific_epithet,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
34 
infra_rank_1,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first",
35 
infra_ep_1,"/taxondetermination[role_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
36 
cf_aff,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
37 
notes,"/taxondetermination[role_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
38 
orig_family,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
39 
orig_species,"/taxondetermination[role_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
30 
specific_authority,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
31 
family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
32 
genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
33 
specific_epithet,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
34 
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first",
35 
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
36 
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
37 
notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
38 
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
39 
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
40 40 
OBSERVATION_ID,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
mappings/Makefile
20 20 
chRoot = $(bin)/ch_root <$< >$@
21 21 

  		




  22
  22
  
    
VegX-VegBIEN.organisms.csv: _always


  		




  
  23
  
    
	$(bin)/in_place $@ $(bin)/simplify_xpath


  		




  23
  24
  
    
	$(bin)/in_place $@ $(bin)/sort 1 0


  		




  24
  25
  
    

  		




  25
  26
  
    
#####


  		












  

    
      mappings/SALVIAS_db-VegBIEN.plots.csv
    
  





  20
  20
  
    
Precip,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=precipitationMm]]:[@fkey=tableRecord_ID]/definedvalue",


  		




  21
  21
  
    
Temp,"/definedvalue[*_id/userdefined[tablename=locationevent,userdefinedname=temperatureC]]:[@fkey=tableRecord_ID]/definedvalue",


  		




  22
  22
  
    
PlotMethod,/methodnarrative,


  		




  23
  
  
    
date_finish,/obsenddate/_date/date,


  		




  24
  
  
    
date_start,/obsstartdate/_date/date,


  		




  
  23
  
    
date_finish,/obsenddate/_*/date,


  		




  
  24
  
    
date_start,/obsstartdate/_*/date,


  		




  25
  25
  
    
soil_acidity,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilAcidity]]:[@fkey=tableRecord_ID]/definedvalue",


  		




  26
  26
  
    
soil_base,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilBase]]:[@fkey=tableRecord_ID]/definedvalue",


  		




  27
  27
  
    
soil_Ca,"/soilobs:[soilhorizon=unknown]/definedvalue[*_id/userdefined[tablename=soilObs,userdefinedname=soilCalcium]]:[@fkey=tableRecord_ID]/definedvalue",


  		












Also available in:  Unified diff