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1
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#!/bin/bash
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2
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# Imports all inputs at once
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3
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import_all_main ()
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{
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local self="${BASH_SOURCE[0]}"
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local selfDir="$(dirname -- "$self")"
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8
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if test "${BASH_LINENO[1]}" = 0; then # was run without initial "."
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echo "Usage: . $self [vars...] (note initial \".\")"|fold -s >&2
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return 2
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fi
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13
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14
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make inputs/.TNRS/tnrs_accepted/reinstall
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make inputs/.TNRS/tnrs_other/reinstall
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16
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make inputs/.geoscrub/import "$@" &
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sleep 5 # wait for make commands to scroll by
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19
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make inputs/.NCBI/import by_col=1 "$@"
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21
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# Must come after NCBI for cross links to be made
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make inputs/.TNRS/import "$@"
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23
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wait %1 # wait for asynchronous commands (geoscrub import)
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25
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make inputs/.TNRS/tnrs/tnrs-remake wait=1 "$@" &
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27
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. "$selfDir/with_all" import "$@"
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28
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29
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after_import ()
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30
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{
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31
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bin/make_analytical_db
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}
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33
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jobs="$(jobs -p)"
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("$selfDir/waitpid" $jobs; after_import) &
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36
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}
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37
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import_all_main "$@"
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