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1 4651 aaronmk
SALVIAS,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2 4336 aaronmk
SiteCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
3
PlotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 5905 aaronmk
PlotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
5 4324 aaronmk
SiteCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
6
PlotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
7 4767 aaronmk
plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
8 4809 aaronmk
Elev,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
9 4820 aaronmk
elev_max_m,/location/elevation_m/_alt/2/_avg/max,
10 4822 aaronmk
elev_min_m,/location/elevation_m/_alt/2/_avg/min,
11 6154 aaronmk
topography_desc,/location/landform,
12 3968 aaronmk
PlotMethod,/location/locationevent/*_id/method/name,
13 6140 aaronmk
lookup_MethodCode_Description,/location/locationevent/*_id/method/observationmeasure,
14 4467 aaronmk
project_id,/location/locationevent/*_id/project/sourceaccessioncode,
15 5977 aaronmk
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
16
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
17 6002 aaronmk
SiteCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
18
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
19 6217 aaronmk
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1",
20
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1",
21 6154 aaronmk
vegetation_2,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/1,
22
vegetation_1,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/2,Second because less detailed than vegetation_2
23
life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/3,
24
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname/_alt/4,
25 6217 aaronmk
date_finish,/location/locationevent/obsenddate/_alt/1,
26
date_start,/location/locationevent/obsstartdate/_alt/1,
27 4753 aaronmk
Precip,/location/locationevent/precipitation_m,
28 4913 aaronmk
soil_acidity,"/location/locationevent/soilobs/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
29
soil_base,/location/locationevent/soilobs/basesaturation_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
30
soil_Ca,/location/locationevent/soilobs/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
31
soil_C,/location/locationevent/soilobs/carbon_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
32 4754 aaronmk
soil_cation_cap,/location/locationevent/soilobs/cationexchangecapacity_cmol_kg,
33 4912 aaronmk
clay_percent,/location/locationevent/soilobs/clay_fraction/_percent_to_fraction/value,
34 3968 aaronmk
soil_conductivity,/location/locationevent/soilobs/conductivity,
35 4913 aaronmk
soil_Mg,/location/locationevent/soilobs/magnesium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
36
soil_N,/location/locationevent/soilobs/nitrogen_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
37 4912 aaronmk
organic_percent,/location/locationevent/soilobs/organic_fraction/_percent_to_fraction/value,
38 3968 aaronmk
pH,/location/locationevent/soilobs/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
39 4913 aaronmk
soil_P,"/location/locationevent/soilobs/phosphorus_fraction/_percent_to_fraction/value/_map:[""<1,5""=0,*=*]/value",Assuming units are % based on the range of values
40
soil_K,/location/locationevent/soilobs/potassium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
41 4912 aaronmk
sand_percent,/location/locationevent/soilobs/sand_fraction/_percent_to_fraction/value,
42
silt_percent,/location/locationevent/soilobs/silt_fraction/_percent_to_fraction/value,
43 4913 aaronmk
soil_Na,/location/locationevent/soilobs/sodium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
44 4912 aaronmk
soil_texture,/location/locationevent/soilobs/texture,
45 5176 aaronmk
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
46
SiteCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
47 4753 aaronmk
Temp,/location/locationevent/temperature_c,
48 3983 aaronmk
Locality_Description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
49 4638 aaronmk
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
50 5861 aaronmk
LatDec,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
51
LongDec,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
52 6154 aaronmk
lat_string,/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude,
53
long_string,/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude,
54 5855 aaronmk
MajorGeo,/location/locationplace/*_id/place/continent,
55
Country,/location/locationplace/*_id/place/country,
56
pol2,/location/locationplace/*_id/place/county,Brad: No pol2=countyParish
57 6179 aaronmk
LatDec,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
58
LongDec,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
59
Country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
60
PolDiv1,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,Brad: No; pol1=stateProvince
61 5905 aaronmk
PlotID,"/location/locationplace/*_id/place/placecode/_if[@name=""if geovalidation""]/then","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
62 5855 aaronmk
PolDiv1,/location/locationplace/*_id/place/stateprovince,Brad: No; pol1=stateProvince
63 4638 aaronmk
plot_notes,/location/notespublic,
64 4753 aaronmk
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value,
65 4786 aaronmk
slope_gradient,/location/slopegradient_fraction/_alt/1,
66 5773 aaronmk
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
67
SiteCode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
68 6154 aaronmk
AccessCode,,"** No join mapping for *AccessCode ** 3 plots contain 3 in this field and ""del"" in tmp_del"
69
Country_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
70 4979 aaronmk
ElevSource,,** No join mapping for *ElevSource **
71 6154 aaronmk
MethodCode,,** No non-empty join mapping for OMIT ** Not globally unique after lookup_MethodCode_Description is combined with PlotMethod
72 4979 aaronmk
PrecipSource,,** No join mapping for *PrecipSource **
73
PrimOwnerID,,** No join mapping for *PrimOwnerID **
74 6154 aaronmk
PrimOwnerID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
75 4979 aaronmk
RevisionComments,,** No join mapping for *RevisionComments **
76
SiteName,,** No join mapping for *SiteName **
77
TempSource,,** No join mapping for *TempSource **
78
bearing,,** No join mapping for *bearing **
79 6154 aaronmk
lat_long_accuracy,,"** No join mapping for *lat_long_accuracy ** Plain text description of accuracy, not numeric"
80 4979 aaronmk
new_world,,** No join mapping for *new_world **
81
orig_filename,,** No join mapping for *orig_filename **
82
plot_administrator,,** No join mapping for *plot_administrator **
83 6154 aaronmk
plot_administrator_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
84 4979 aaronmk
pol1_type,,** No join mapping for *pol1_type **
85
pol2_type,,** No join mapping for *pol2_type **
86 6154 aaronmk
project_id_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
87 4979 aaronmk
recensused,,"** No join mapping for *recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
88 6154 aaronmk
tmp_del,,"** No join mapping for *tmp_del ** 3 plots contain ""del"" in this field and 3 in AccessCode"
89 6167 aaronmk
tmp_del_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation