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Revision 6251

Added by Aaron Marcuse-Kubitza about 12 years ago

mappings/VegCore-VegBIEN.csv: Removed mapping for coordinatePrecision, which is not the same as coordsaccuracy_m. coordinatePrecision is instead "the precision of the coordinates" themselves in degrees (<http://rs.tdwg.org/dwc/terms/#coordinatePrecision&gt;).

View differences:

inputs/XAL/Specimen/VegBIEN.csv
56 56 
darwin:MaximumDepth,/location/locationevent/waterdepth_m/_avg/max,
57 57 
darwin:MinimumDepth,/location/locationevent/waterdepth_m/_avg/min,
58 58 
darwin:Locality,/location/locationnarrative/_merge/1,
59 
darwin:CoordinatePrecision,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/2,
60 59 
darwin:Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
61 60 
darwin:Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
62 61 
darwin:ContinentOcean,/location/locationplace/*_id/place/continent,
......
68 67 
darwin:StateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
69 68 
darwin:StateProvince,/location/locationplace/*_id/place/stateprovince,
70 69 
darwin:BasisOfRecord,,** No join mapping for basisOfRecord **
70 
darwin:CoordinatePrecision,,** No join mapping for coordinatePrecision **
71 71 
darwin:DateLastModified,,** No join mapping for dcterms:modified **
72 72 
darwin:FieldNumber,,"** No non-empty join mapping for UNUSED ** `grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines. This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber)."
73 73 
darwin:JulianDay,,** No join mapping for day **
inputs/XAL/Specimen/unmapped_terms.csv
3 3 
typeStatus
4 4 
day
5 5 
eventTime
6 
coordinatePrecision
6 7 
preparations
7 8 
otherCatalogNumbers
8 9 
relationshipOfResource
inputs/SpeciesLink/Specimen/VegBIEN.csv
192 192 
conceptual_darwin_2003_1_0_Locality,/location/locationnarrative/_merge/1,
193 193 
dwc_dwcore_Locality,/location/locationnarrative/_merge/1,
194 194 
dwc_terms_locality,/location/locationnarrative/_merge/1,
195 
dwc_terms_coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
196 
conceptual_darwin_2003_1_0_CoordinatePrecision,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/2,
195 
dwc_terms_coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
197 196 
conceptual_darwin_2003_1_0_BoundingBox,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
198 197 
conceptual_darwin_2003_1_0_Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
199 198 
dwc_geospatial_DecimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
......
230 229 
dwc_dwcore_StateProvince,/location/locationplace/*_id/place/stateprovince,
231 230 
dwc_terms_stateProvince,/location/locationplace/*_id/place/stateprovince,
232 231 
conceptual_darwin_2003_1_0_BasisOfRecord,,** No join mapping for basisOfRecord **
232 
conceptual_darwin_2003_1_0_CoordinatePrecision,,** No join mapping for coordinatePrecision **
233 233 
conceptual_darwin_2003_1_0_DateLastModified,,** No join mapping for dcterms:modified **
234 234 
conceptual_darwin_2003_1_0_JulianDay,,** No join mapping for day/_alt/1 **
235 235 
conceptual_darwin_2003_1_0_PreparationType,,** No join mapping for preparations **
inputs/SpeciesLink/Specimen/test.xml.ref
567 567 
                        <place>
568 568 
                            <coordinates_id>
569 569 
                                <coordinates>
570 
                                    <coordsaccuracy_m>
571 
                                        <_noCV>
572 
                                            <value>
573 
                                                <_alt>
574 
                                                    <1>$dwc_terms_coordinateUncertaintyInMeters</1>
575 
                                                    <2>$conceptual_darwin_2003_1_0_CoordinatePrecision</2>
576 
                                                </_alt>
577 
                                            </value>
578 
                                        </_noCV>
579 
                                    </coordsaccuracy_m>
570 
                                    <coordsaccuracy_m><_noCV><value>$dwc_terms_coordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m>
580 571 
                                    <footprintgeometry_dwc>$conceptual_darwin_2003_1_0_BoundingBox</footprintgeometry_dwc>
581 572 
                                    <latitude_deg>
582 573 
                                        <_nullIf>
inputs/SpeciesLink/Specimen/unmapped_terms.csv
19 19 
typeStatus
20 20 
day
21 21 
eventTime
22 
coordinatePrecision
22 23 
preparations
23 24 
otherCatalogNumbers
24 25 
relationshipOfResource
inputs/NY/Specimen/VegBIEN.csv
63 63 
Substrate,"/location/locationnarrative/_merge/1/_join/2/_label[label=""substrate""]/value",
64 64 
Vegetation,"/location/locationnarrative/_merge/1/_join/3/_label[label=""vegetation""]/value",
65 65 
Habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
66 
CoordinatePrecision,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/2,
67 66 
BoundingBox,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
68 67 
Latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
69 68 
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
......
77 76 
StateProvince,/location/locationplace/*_id/place/stateprovince,
78 77 
BasisOfRecord,,** No join mapping for basisOfRecord **
79 78 
CollectorNumber,,** No non-empty join mapping for UNUSED **
79 
CoordinatePrecision,,** No join mapping for coordinatePrecision **
80 80 
DateLastModified,,** No join mapping for dcterms:modified **
81 81 
JulianDay,,** No join mapping for day **
82 82 
PreparationType,,** No join mapping for preparations **
inputs/NY/Specimen/test.xml.ref
310 310 
                        <place>
311 311 
                            <coordinates_id>
312 312 
                                <coordinates>
313 
                                    <coordsaccuracy_m><_noCV><value>$CoordinatePrecision</value></_noCV></coordsaccuracy_m>
314 313 
                                    <footprintgeometry_dwc>$BoundingBox</footprintgeometry_dwc>
315 314 
                                    <latitude_deg>
316 315 
                                        <_nullIf>
inputs/NY/Specimen/unmapped_terms.csv
3 3 
typeStatus
4 4 
day
5 5 
eventTime
6 
coordinatePrecision
6 7 
preparations
7 8 
otherCatalogNumbers
8 9 
relationshipOfResource
inputs/CVS/Organism/VegBIEN.csv
12 12 
currentTaxonName sec Weakley 2006,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1",
13 13 
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1,
14 14 
currentTaxonName sec Weakley 2006,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
15 
locationAccuracy-m,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
15 
locationAccuracy-m,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
16 16 
publicLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
17 17 
publicLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
18 18 
county,/location/locationplace/*_id/place/county,
inputs/ARIZ/Specimen/VegBIEN.csv
67 67 
MaximumDepthInMeters,/location/locationevent/waterdepth_m/_avg/max,
68 68 
MinimumDepthInMeters,/location/locationevent/waterdepth_m/_avg/min,
69 69 
Locality,/location/locationnarrative/_merge/1,
70 
CoordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
70 
CoordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
71 71 
BoundingBox,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
72 72 
DecimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
73 73 
DecimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
inputs/NCU-NCSC/Specimen/VegBIEN.csv
15 15 
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/1,
16 16 
Full Taxon Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonname,
17 17 
Barcode,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
18 
Accuracy,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
18 
Accuracy,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
19 19 
Lat (-=S),"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",
20 20 
Long (-=W),"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value/_replace:[""\?$""=]/value",
21 21 
Country,/location/locationplace/*_id/place/country,
inputs/VegBank/plot_/VegBIEN.csv
13 13 
authorplotcode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
14 14 
plot_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
15 15 
locationnarrative,/location/locationnarrative/_merge/1,
16 
locationaccuracy,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
16 
locationaccuracy,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
17 17 
shape,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
18 18 
latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
19 19 
longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
inputs/QMOR/Specimen/VegBIEN.csv
67 67 
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
68 68 
locality,/location/locationnarrative/_merge/1,
69 69 
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
70 
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
70 
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
71 71 
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
72 72 
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
73 73 
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
mappings/VegCore-VegBIEN.csv
314 314 
locality,/location/locationnarrative/_merge/1,
315 315 
verbatimLocality,/location/locationnarrative/_merge/2,
316 316 
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
317 
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/1,
318 
coordinatePrecision,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value/_alt/2,
317 
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
319 318 
footprintWKT,/location/locationplace/*_id/place/*_id/coordinates/footprintgeometry_dwc,
320 319 
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
321 320 
decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
mappings/for_review/VegCore-VegBIEN.csv
315 315 
verbatimLocality,//location/locationnarrative,
316 316 
habitat,"//location/locationnarrative/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
317 317 
coordinateUncertaintyInMeters,//coordinates/coordsaccuracy_m,
318 
coordinatePrecision,//coordinates/coordsaccuracy_m,
319 318 
footprintWKT,//coordinates/footprintgeometry_dwc,
320 319 
decimalLatitude,//coordinates/latitude_deg,
321 320 
decimalLongitude,//coordinates/longitude_deg,

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