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Revision 629

Added by Aaron Marcuse-Kubitza about 13 years ago

input.Makefile: Added test that generates VegX.xml

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inputs/SALVIAS/test/VegX.xml.ref
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<?xml version="1.0" ?>
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<VegX>
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    <plotObservations>
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        <plotObservation id="0">
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            <simpleUserdefined>
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                <name>authorCode</name>
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                <value>1</value>
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            </simpleUserdefined>
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            <projectID>0</projectID>
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            <plotUniqueIdentifierID>0</plotUniqueIdentifierID>
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            <simpleUserdefined>
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                <name>precipMm</name>
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                <value>2500.0</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>plotMethodology</name>
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                <value>0.1 ha  transect, stems &gt;= 2.5 cm dbh</value>
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            </simpleUserdefined>
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        </plotObservation>
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        <plotObservation id="1">
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            <simpleUserdefined>
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                <name>authorCode</name>
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                <value>2</value>
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            </simpleUserdefined>
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            <projectID>1</projectID>
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            <plotUniqueIdentifierID>1</plotUniqueIdentifierID>
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            <simpleUserdefined>
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                <name>precipMm</name>
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                <value>866.0</value>
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            </simpleUserdefined>
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            <temperature>7.4</temperature>
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            <simpleUserdefined>
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                <name>plotMethodology</name>
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                <value>0.1 ha  transect, stems &gt;= 2.5 cm dbh</value>
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            </simpleUserdefined>
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        </plotObservation>
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        <plotObservation id="2">
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            <simpleUserdefined>
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                <name>authorCode</name>
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                <value>295</value>
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            </simpleUserdefined>
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        </plotObservation>
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        <plotObservation id="3">
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            <simpleUserdefined>
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                <name>authorCode</name>
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                <value>295</value>
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            </simpleUserdefined>
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        </plotObservation>
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    </plotObservations>
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    <projects>
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        <project id="0">
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            <title>1</title>
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        </project>
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        <project id="1">
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            <title>1</title>
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        </project>
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    </projects>
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    <plots>
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        <plot id="0">
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            <plotUniqueIdentifier>ACHUPALL</plotUniqueIdentifier>
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            <simpleUserdefined>
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                <name>majorGeo</name>
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                <value>South America</value>
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            </simpleUserdefined>
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            <country>Ecuador</country>
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            <geospatial>
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                <DecimalLatitude>-3.45</DecimalLatitude>
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                <DecimalLongitude>-78.3667</DecimalLongitude>
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                <verbatimElevation>2100.0</verbatimElevation>
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            </geospatial>
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            <area>0.06</area>
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        </plot>
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        <plot id="1">
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            <plotUniqueIdentifier>ALLACHER</plotUniqueIdentifier>
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            <simpleUserdefined>
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                <name>majorGeo</name>
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                <value>Europe</value>
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            </simpleUserdefined>
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            <country>Germany</country>
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            <geospatial>
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                <DecimalLatitude>48.0667</DecimalLatitude>
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                <DecimalLongitude>11.5</DecimalLongitude>
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                <verbatimElevation>530.0</verbatimElevation>
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            </geospatial>
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            <area>0.1</area>
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        </plot>
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    </plots>
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    <communityDeterminations>
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        <communityDetermination>
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            <plotObservationID>0</plotObservationID>
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            <communityConcepts>
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                <communityConcept>
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                    <commonName>T-LMw</commonName>
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                    <name>Tropical lower montane wet forest</name>
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                </communityConcept>
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            </communityConcepts>
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        </communityDetermination>
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        <communityDetermination>
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            <plotObservationID>1</plotObservationID>
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            <communityConcepts>
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                <communityConcept>
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                    <commonName>cT-m</commonName>
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                    <name>Cool temperate moist forest</name>
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                </communityConcept>
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            </communityConcepts>
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        </communityDetermination>
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    </communityDeterminations>
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    <individualOrganismObservations>
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        <individualOrganismObservation id="0">
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            <individualOrganismID>0</individualOrganismID>
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            <plotObservationID>2</plotObservationID>
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            <simpleUserdefined>
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                <name>censusNo</name>
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                <value>1</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>individualCode</name>
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                <value>1</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>habit</name>
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                <value>T</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>count</name>
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                <value>1</value>
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            </simpleUserdefined>
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        </individualOrganismObservation>
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        <individualOrganismObservation id="1">
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            <individualOrganismID>1</individualOrganismID>
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            <plotObservationID>3</plotObservationID>
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            <simpleUserdefined>
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                <name>censusNo</name>
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                <value>1</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>individualCode</name>
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                <value>2</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>habit</name>
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                <value>T</value>
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            </simpleUserdefined>
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            <simpleUserdefined>
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                <name>count</name>
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                <value>1</value>
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            </simpleUserdefined>
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        </individualOrganismObservation>
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        <individualOrganismObservation id="0">
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            <relatedItem>
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                <relationshipType>stemParent</relationshipType>
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                <relatedItemID>1</relatedItemID>
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            </relatedItem>
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            <simpleUserdefined>
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                <name>count</name>
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                <value>1</value>
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            </simpleUserdefined>
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            <diameterBaseDistance>
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                <baseDistance>
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                    <value>1.37</value>
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                </baseDistance>
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                <diameter>6.59</diameter>
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            </diameterBaseDistance>
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        </individualOrganismObservation>
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        <individualOrganismObservation id="1">
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            <individualOrganismID>2</individualOrganismID>
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        </individualOrganismObservation>
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        <individualOrganismObservation id="1">
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            <relatedItem>
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                <relationshipType>stemParent</relationshipType>
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                <relatedItemID>2</relatedItemID>
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            </relatedItem>
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            <simpleUserdefined>
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                <name>count</name>
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                <value>0</value>
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            </simpleUserdefined>
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            <diameterBaseDistance>
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                <baseDistance>
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                    <value>1.37</value>
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                </baseDistance>
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                <diameter>3.09</diameter>
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            </diameterBaseDistance>
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        </individualOrganismObservation>
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        <individualOrganismObservation id="2">
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            <individualOrganismID>3</individualOrganismID>
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        </individualOrganismObservation>
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    </individualOrganismObservations>
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    <individualOrganisms>
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        <individualOrganism id="0">
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            <taxonNameUsageConceptsID>0</taxonNameUsageConceptsID>
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        </individualOrganism>
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        <individualOrganism id="1">
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            <taxonNameUsageConceptsID>1</taxonNameUsageConceptsID>
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        </individualOrganism>
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        <individualOrganism id="2">
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            <taxonNameUsageConceptsID>2</taxonNameUsageConceptsID>
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        </individualOrganism>
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        <individualOrganism id="3">
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            <taxonNameUsageConceptsID>3</taxonNameUsageConceptsID>
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        </individualOrganism>
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    </individualOrganisms>
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    <taxonNameUsageConcepts>
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        <taxonNameUsageConcept id="0">
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            <voucher>1</voucher>
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        </taxonNameUsageConcept>
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        <taxonNameUsageConcept id="1">
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            <voucher>2</voucher>
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        </taxonNameUsageConcept>
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        <taxonNameUsageConcept id="2">
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            <voucher>1</voucher>
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        </taxonNameUsageConcept>
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        <taxonNameUsageConcept id="3">
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            <voucher>2</voucher>
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        </taxonNameUsageConcept>
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    </taxonNameUsageConcepts>
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    <taxonDeterminations>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>0</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>collector</role>
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            </partyWithRole>
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            <groupType>direct</groupType>
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        </taxonDetermination>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>0</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>computer</role>
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            </partyWithRole>
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            <taxonRelationshipAssertions>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>0</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>1</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>2</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>3</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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            </taxonRelationshipAssertions>
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        </taxonDetermination>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>0</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>identifier</role>
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            </partyWithRole>
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            <taxonRelationshipAssertions>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>4</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>5</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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            </taxonRelationshipAssertions>
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        </taxonDetermination>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>1</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>collector</role>
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            </partyWithRole>
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            <groupType>direct</groupType>
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        </taxonDetermination>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>1</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>computer</role>
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            </partyWithRole>
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            <taxonRelationshipAssertions>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>6</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>7</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>8</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>9</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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            </taxonRelationshipAssertions>
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        </taxonDetermination>
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        <taxonDetermination>
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            <taxonNameUsageConceptID>1</taxonNameUsageConceptID>
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            <partyWithRole>
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                <role>identifier</role>
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            </partyWithRole>
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            <taxonRelationshipAssertions>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>10</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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                <taxonRelationshipAssertion>
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                    <assertion>
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                        <taxonConceptID>11</taxonConceptID>
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                    </assertion>
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                </taxonRelationshipAssertion>
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            </taxonRelationshipAssertions>
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        </taxonDetermination>
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    </taxonDeterminations>
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    <taxonConcepts>
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        <taxonConcept id="0">
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            <Rank code="fam"/>
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            <Name>Arecaceae</Name>
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        </taxonConcept>
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        <taxonConcept id="1">
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            <Rank code="gen"/>
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            <Name>Geonoma</Name>
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        </taxonConcept>
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        <taxonConcept id="2">
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            <Rank code="sp"/>
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            <Name>seleri</Name>
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        </taxonConcept>
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        <taxonConcept id="3">
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            <Rank code="auth"/>
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            <Name>Burret</Name>
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        </taxonConcept>
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        <taxonConcept id="4">
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            <Rank code="fam"/>
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            <Name>Arecaceae</Name>
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        </taxonConcept>
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        <taxonConcept id="5">
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            <Rank code="sp"/>
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            <Name>seleri</Name>
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        </taxonConcept>
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        <taxonConcept id="6">
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            <Rank code="fam"/>
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            <Name>Clusiaceae</Name>
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        </taxonConcept>
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        <taxonConcept id="7">
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            <Rank code="gen"/>
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            <Name>Tovomitopsis</Name>
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        </taxonConcept>
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        <taxonConcept id="8">
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            <Rank code="sp"/>
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            <Name>allenii</Name>
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        </taxonConcept>
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        <taxonConcept id="9">
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            <Rank code="auth"/>
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            <Name>Maguire</Name>
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        </taxonConcept>
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        <taxonConcept id="10">
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            <Rank code="fam"/>
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            <Name>Clusiaceae</Name>
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        </taxonConcept>
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        <taxonConcept id="11">
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            <Rank code="sp"/>
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            <Name>allenii</Name>
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        </taxonConcept>
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    </taxonConcepts>
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</VegX>
inputs/input.Makefile
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ifneq ($(wildcard test/),)


  		




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testOutputs := test/VegBIEN.xml test/import.out


  		




  
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testOutputs := test/VegX.xml test/VegBIEN.xml test/import.out


  		




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test: _always $(testOutputs) ;


  		




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.PRECIOUS: $(testOutputs)


  		




  
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all += $(testOutputs)


  		




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define runTest


  		




  
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define test


  		




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env test=1 n=$(test_n) $(1) $(+_)$(if $(2),, >$@) 2>&1$(if $(2), |\


  		




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grep -v -E '^$(2)$$' >$@) || { e=$$?; cat $@; exit $$e;}


  		




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$(DIFF) $@.ref $@


  		




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endef


  		




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test2File = $(call test,$(map),Processed .* input rows)


  		




  
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test2Db = $(call test,$(import))


  		




  
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test/VegX.xml: $(vegxMaps) _always


  		




  
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	$(test2File)


  		




  
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test/VegBIEN.xml: $(vegbienMaps) _always


  		




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	$(call runTest,$(map),Processed .* input rows)


  		




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.PRECIOUS: test/VegBIEN.xml


  		




  
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	$(test2File)


  		




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test/import.out: $(vegbienMaps) _always


  		




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	$(call runTest,$(import))


  		




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.PRECIOUS: test/import.out


  		




  
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	$(test2Db)


  		




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%-ok: _always


  		




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	$(CP) $* $*.ref


  		












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