Revision 632
Added by Aaron Marcuse-Kubitza about 13 years ago
| test/accepted_output/SALVIAS.organisms.VegBIEN.xml | ||
|---|---|---|
| 80 | 80 |
</plantconcept> |
| 81 | 81 |
</plantconcept_id> |
| 82 | 82 |
<determinationtype>Computer (automated)</determinationtype> |
| 83 |
<currentdetermination>true</currentdetermination>
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|
| 83 |
<iscurrent>true</iscurrent>
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|
| 84 | 84 |
</taxondetermination> |
| 85 | 85 |
<taxondetermination> |
| 86 | 86 |
<role_id> |
| ... | ... | |
| 101 | 101 |
</plantconcept> |
| 102 | 102 |
</plantconcept_id> |
| 103 | 103 |
<determinationtype>Computer (automated)</determinationtype> |
| 104 |
<currentdetermination>true</currentdetermination>
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|
| 104 |
<iscurrent>true</iscurrent>
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| 105 | 105 |
</taxondetermination> |
| 106 | 106 |
<taxondetermination> |
| 107 | 107 |
<role_id> |
| ... | ... | |
| 122 | 122 |
</plantconcept> |
| 123 | 123 |
</plantconcept_id> |
| 124 | 124 |
<determinationtype>Computer (automated)</determinationtype> |
| 125 |
<currentdetermination>true</currentdetermination>
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|
| 125 |
<iscurrent>true</iscurrent>
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| 126 | 126 |
</taxondetermination> |
| 127 | 127 |
<taxondetermination> |
| 128 | 128 |
<role_id> |
| ... | ... | |
| 143 | 143 |
</plantconcept> |
| 144 | 144 |
</plantconcept_id> |
| 145 | 145 |
<determinationtype>Author</determinationtype> |
| 146 |
<originaldetermination>true</originaldetermination>
|
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| 147 |
<currentdetermination>true</currentdetermination>
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| 146 |
<isoriginal>true</isoriginal>
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| 147 |
<iscurrent>true</iscurrent>
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| 148 | 148 |
</taxondetermination> |
| 149 | 149 |
<taxondetermination> |
| 150 | 150 |
<role_id> |
| ... | ... | |
| 165 | 165 |
</plantconcept> |
| 166 | 166 |
</plantconcept_id> |
| 167 | 167 |
<determinationtype>Author</determinationtype> |
| 168 |
<originaldetermination>true</originaldetermination>
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| 169 |
<currentdetermination>true</currentdetermination>
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| 168 |
<isoriginal>true</isoriginal>
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| 169 |
<iscurrent>true</iscurrent>
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|
| 170 | 170 |
</taxondetermination> |
| 171 | 171 |
</taxonoccurrence> |
| 172 | 172 |
<taxonoccurrence id="1"> |
| ... | ... | |
| 249 | 249 |
</plantconcept> |
| 250 | 250 |
</plantconcept_id> |
| 251 | 251 |
<determinationtype>Computer (automated)</determinationtype> |
| 252 |
<currentdetermination>true</currentdetermination>
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|
| 252 |
<iscurrent>true</iscurrent>
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|
| 253 | 253 |
</taxondetermination> |
| 254 | 254 |
<taxondetermination> |
| 255 | 255 |
<role_id> |
| ... | ... | |
| 270 | 270 |
</plantconcept> |
| 271 | 271 |
</plantconcept_id> |
| 272 | 272 |
<determinationtype>Computer (automated)</determinationtype> |
| 273 |
<currentdetermination>true</currentdetermination>
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|
| 273 |
<iscurrent>true</iscurrent>
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|
| 274 | 274 |
</taxondetermination> |
| 275 | 275 |
<taxondetermination> |
| 276 | 276 |
<role_id> |
| ... | ... | |
| 291 | 291 |
</plantconcept> |
| 292 | 292 |
</plantconcept_id> |
| 293 | 293 |
<determinationtype>Computer (automated)</determinationtype> |
| 294 |
<currentdetermination>true</currentdetermination>
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|
| 294 |
<iscurrent>true</iscurrent>
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| 295 | 295 |
</taxondetermination> |
| 296 | 296 |
<taxondetermination> |
| 297 | 297 |
<role_id> |
| ... | ... | |
| 312 | 312 |
</plantconcept> |
| 313 | 313 |
</plantconcept_id> |
| 314 | 314 |
<determinationtype>Author</determinationtype> |
| 315 |
<originaldetermination>true</originaldetermination>
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| 316 |
<currentdetermination>true</currentdetermination>
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| 315 |
<isoriginal>true</isoriginal>
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| 316 |
<iscurrent>true</iscurrent>
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| 317 | 317 |
</taxondetermination> |
| 318 | 318 |
<taxondetermination> |
| 319 | 319 |
<role_id> |
| ... | ... | |
| 334 | 334 |
</plantconcept> |
| 335 | 335 |
</plantconcept_id> |
| 336 | 336 |
<determinationtype>Author</determinationtype> |
| 337 |
<originaldetermination>true</originaldetermination>
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|
| 338 |
<currentdetermination>true</currentdetermination>
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| 337 |
<isoriginal>true</isoriginal>
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|
| 338 |
<iscurrent>true</iscurrent>
|
|
| 339 | 339 |
</taxondetermination> |
| 340 | 340 |
</taxonoccurrence> |
| 341 | 341 |
</VegBIEN> |
| test/accepted_output/SALVIAS_db.organisms.VegBIEN.xml | ||
|---|---|---|
| 67 | 67 |
</plantconcept> |
| 68 | 68 |
</plantconcept_id> |
| 69 | 69 |
<determinationtype>Computer (automated)</determinationtype> |
| 70 |
<currentdetermination>true</currentdetermination>
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|
| 70 |
<iscurrent>true</iscurrent>
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|
| 71 | 71 |
</taxondetermination> |
| 72 | 72 |
<taxondetermination> |
| 73 | 73 |
<role_id> |
| ... | ... | |
| 88 | 88 |
</plantconcept> |
| 89 | 89 |
</plantconcept_id> |
| 90 | 90 |
<determinationtype>Computer (automated)</determinationtype> |
| 91 |
<currentdetermination>true</currentdetermination>
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| 91 |
<iscurrent>true</iscurrent>
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|
| 92 | 92 |
</taxondetermination> |
| 93 | 93 |
<taxondetermination> |
| 94 | 94 |
<role_id> |
| ... | ... | |
| 109 | 109 |
</plantconcept> |
| 110 | 110 |
</plantconcept_id> |
| 111 | 111 |
<determinationtype>Computer (automated)</determinationtype> |
| 112 |
<currentdetermination>true</currentdetermination>
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| 112 |
<iscurrent>true</iscurrent>
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| 113 | 113 |
</taxondetermination> |
| 114 | 114 |
<taxondetermination> |
| 115 | 115 |
<role_id> |
| ... | ... | |
| 130 | 130 |
</plantconcept> |
| 131 | 131 |
</plantconcept_id> |
| 132 | 132 |
<determinationtype>Computer (automated)</determinationtype> |
| 133 |
<currentdetermination>true</currentdetermination>
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| 133 |
<iscurrent>true</iscurrent>
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| 134 | 134 |
</taxondetermination> |
| 135 | 135 |
<taxondetermination> |
| 136 | 136 |
<role_id> |
| ... | ... | |
| 151 | 151 |
</plantconcept> |
| 152 | 152 |
</plantconcept_id> |
| 153 | 153 |
<determinationtype>Author</determinationtype> |
| 154 |
<originaldetermination>true</originaldetermination>
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| 155 |
<currentdetermination>true</currentdetermination>
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| 154 |
<isoriginal>true</isoriginal>
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| 155 |
<iscurrent>true</iscurrent>
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| 156 | 156 |
</taxondetermination> |
| 157 | 157 |
<taxondetermination> |
| 158 | 158 |
<role_id> |
| ... | ... | |
| 173 | 173 |
</plantconcept> |
| 174 | 174 |
</plantconcept_id> |
| 175 | 175 |
<determinationtype>Author</determinationtype> |
| 176 |
<originaldetermination>true</originaldetermination>
|
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| 177 |
<currentdetermination>true</currentdetermination>
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| 176 |
<isoriginal>true</isoriginal>
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| 177 |
<iscurrent>true</iscurrent>
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| 178 | 178 |
</taxondetermination> |
| 179 | 179 |
<specimen> |
| 180 | 180 |
<reference_id> |
| ... | ... | |
| 250 | 250 |
</plantconcept> |
| 251 | 251 |
</plantconcept_id> |
| 252 | 252 |
<determinationtype>Computer (automated)</determinationtype> |
| 253 |
<currentdetermination>true</currentdetermination>
|
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| 253 |
<iscurrent>true</iscurrent>
|
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| 254 | 254 |
</taxondetermination> |
| 255 | 255 |
<taxondetermination> |
| 256 | 256 |
<role_id> |
| ... | ... | |
| 271 | 271 |
</plantconcept> |
| 272 | 272 |
</plantconcept_id> |
| 273 | 273 |
<determinationtype>Computer (automated)</determinationtype> |
| 274 |
<currentdetermination>true</currentdetermination>
|
|
| 274 |
<iscurrent>true</iscurrent>
|
|
| 275 | 275 |
</taxondetermination> |
| 276 | 276 |
<taxondetermination> |
| 277 | 277 |
<role_id> |
| ... | ... | |
| 292 | 292 |
</plantconcept> |
| 293 | 293 |
</plantconcept_id> |
| 294 | 294 |
<determinationtype>Computer (automated)</determinationtype> |
| 295 |
<currentdetermination>true</currentdetermination>
|
|
| 295 |
<iscurrent>true</iscurrent>
|
|
| 296 | 296 |
</taxondetermination> |
| 297 | 297 |
<taxondetermination> |
| 298 | 298 |
<role_id> |
| ... | ... | |
| 313 | 313 |
</plantconcept> |
| 314 | 314 |
</plantconcept_id> |
| 315 | 315 |
<determinationtype>Computer (automated)</determinationtype> |
| 316 |
<currentdetermination>true</currentdetermination>
|
|
| 316 |
<iscurrent>true</iscurrent>
|
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| 317 | 317 |
</taxondetermination> |
| 318 | 318 |
<taxondetermination> |
| 319 | 319 |
<role_id> |
| ... | ... | |
| 334 | 334 |
</plantconcept> |
| 335 | 335 |
</plantconcept_id> |
| 336 | 336 |
<determinationtype>Author</determinationtype> |
| 337 |
<originaldetermination>true</originaldetermination>
|
|
| 338 |
<currentdetermination>true</currentdetermination>
|
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| 337 |
<isoriginal>true</isoriginal>
|
|
| 338 |
<iscurrent>true</iscurrent>
|
|
| 339 | 339 |
</taxondetermination> |
| 340 | 340 |
<taxondetermination> |
| 341 | 341 |
<role_id> |
| ... | ... | |
| 356 | 356 |
</plantconcept> |
| 357 | 357 |
</plantconcept_id> |
| 358 | 358 |
<determinationtype>Author</determinationtype> |
| 359 |
<originaldetermination>true</originaldetermination>
|
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| 360 |
<currentdetermination>true</currentdetermination>
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| 359 |
<isoriginal>true</isoriginal>
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| 360 |
<iscurrent>true</iscurrent>
|
|
| 361 | 361 |
</taxondetermination> |
| 362 | 362 |
<specimen> |
| 363 | 363 |
<reference_id> |
| test/accepted_output/NYBG.organisms.VegBIEN.xml | ||
|---|---|---|
| 85 | 85 |
</role> |
| 86 | 86 |
</role_id> |
| 87 | 87 |
<determinationtype>Author</determinationtype> |
| 88 |
<originaldetermination>true</originaldetermination>
|
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| 89 |
<currentdetermination>true</currentdetermination>
|
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| 88 |
<isoriginal>true</isoriginal>
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| 89 |
<iscurrent>true</iscurrent>
|
|
| 90 | 90 |
<plantconcept_id> |
| 91 | 91 |
<plantconcept> |
| 92 | 92 |
<plantname_id> |
| ... | ... | |
| 116 | 116 |
</plantconcept> |
| 117 | 117 |
</plantconcept_id> |
| 118 | 118 |
<determinationtype>Author</determinationtype> |
| 119 |
<originaldetermination>true</originaldetermination>
|
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| 120 |
<currentdetermination>true</currentdetermination>
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| 119 |
<isoriginal>true</isoriginal>
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| 120 |
<iscurrent>true</iscurrent>
|
|
| 121 | 121 |
</taxondetermination> |
| 122 | 122 |
<taxondetermination> |
| 123 | 123 |
<role_id> |
| ... | ... | |
| 138 | 138 |
</plantconcept> |
| 139 | 139 |
</plantconcept_id> |
| 140 | 140 |
<determinationtype>Author</determinationtype> |
| 141 |
<originaldetermination>true</originaldetermination>
|
|
| 142 |
<currentdetermination>true</currentdetermination>
|
|
| 141 |
<isoriginal>true</isoriginal>
|
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| 142 |
<iscurrent>true</iscurrent>
|
|
| 143 | 143 |
</taxondetermination> |
| 144 | 144 |
<taxondetermination> |
| 145 | 145 |
<role_id> |
| ... | ... | |
| 160 | 160 |
</plantconcept> |
| 161 | 161 |
</plantconcept_id> |
| 162 | 162 |
<determinationtype>Author</determinationtype> |
| 163 |
<originaldetermination>true</originaldetermination>
|
|
| 164 |
<currentdetermination>true</currentdetermination>
|
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| 163 |
<isoriginal>true</isoriginal>
|
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| 164 |
<iscurrent>true</iscurrent>
|
|
| 165 | 165 |
</taxondetermination> |
| 166 | 166 |
<taxondetermination> |
| 167 | 167 |
<role_id> |
| ... | ... | |
| 182 | 182 |
</plantconcept> |
| 183 | 183 |
</plantconcept_id> |
| 184 | 184 |
<determinationtype>Author</determinationtype> |
| 185 |
<originaldetermination>true</originaldetermination>
|
|
| 186 |
<currentdetermination>true</currentdetermination>
|
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| 185 |
<isoriginal>true</isoriginal>
|
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| 186 |
<iscurrent>true</iscurrent>
|
|
| 187 | 187 |
</taxondetermination> |
| 188 | 188 |
<taxondetermination> |
| 189 | 189 |
<role_id> |
| ... | ... | |
| 204 | 204 |
</plantconcept> |
| 205 | 205 |
</plantconcept_id> |
| 206 | 206 |
<determinationtype>Author</determinationtype> |
| 207 |
<originaldetermination>true</originaldetermination>
|
|
| 208 |
<currentdetermination>true</currentdetermination>
|
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| 207 |
<isoriginal>true</isoriginal>
|
|
| 208 |
<iscurrent>true</iscurrent>
|
|
| 209 | 209 |
</taxondetermination> |
| 210 | 210 |
<taxondetermination> |
| 211 | 211 |
<role_id> |
| ... | ... | |
| 226 | 226 |
</plantconcept> |
| 227 | 227 |
</plantconcept_id> |
| 228 | 228 |
<determinationtype>Author</determinationtype> |
| 229 |
<originaldetermination>true</originaldetermination>
|
|
| 230 |
<currentdetermination>true</currentdetermination>
|
|
| 229 |
<isoriginal>true</isoriginal>
|
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| 230 |
<iscurrent>true</iscurrent>
|
|
| 231 | 231 |
</taxondetermination> |
| 232 | 232 |
</taxonoccurrence> |
| 233 | 233 |
<taxonoccurrence id="1"> |
| ... | ... | |
| 282 | 282 |
</role> |
| 283 | 283 |
</role_id> |
| 284 | 284 |
<determinationtype>Author</determinationtype> |
| 285 |
<originaldetermination>true</originaldetermination>
|
|
| 286 |
<currentdetermination>true</currentdetermination>
|
|
| 285 |
<isoriginal>true</isoriginal>
|
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| 286 |
<iscurrent>true</iscurrent>
|
|
| 287 | 287 |
<plantconcept_id> |
| 288 | 288 |
<plantconcept> |
| 289 | 289 |
<plantname_id> |
| ... | ... | |
| 313 | 313 |
</plantconcept> |
| 314 | 314 |
</plantconcept_id> |
| 315 | 315 |
<determinationtype>Author</determinationtype> |
| 316 |
<originaldetermination>true</originaldetermination>
|
|
| 317 |
<currentdetermination>true</currentdetermination>
|
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| 316 |
<isoriginal>true</isoriginal>
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| 317 |
<iscurrent>true</iscurrent>
|
|
| 318 | 318 |
</taxondetermination> |
| 319 | 319 |
<taxondetermination> |
| 320 | 320 |
<role_id> |
| ... | ... | |
| 335 | 335 |
</plantconcept> |
| 336 | 336 |
</plantconcept_id> |
| 337 | 337 |
<determinationtype>Author</determinationtype> |
| 338 |
<originaldetermination>true</originaldetermination>
|
|
| 339 |
<currentdetermination>true</currentdetermination>
|
|
| 338 |
<isoriginal>true</isoriginal>
|
|
| 339 |
<iscurrent>true</iscurrent>
|
|
| 340 | 340 |
</taxondetermination> |
| 341 | 341 |
<taxondetermination> |
| 342 | 342 |
<role_id> |
| ... | ... | |
| 357 | 357 |
</plantconcept> |
| 358 | 358 |
</plantconcept_id> |
| 359 | 359 |
<determinationtype>Author</determinationtype> |
| 360 |
<originaldetermination>true</originaldetermination>
|
|
| 361 |
<currentdetermination>true</currentdetermination>
|
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| 360 |
<isoriginal>true</isoriginal>
|
|
| 361 |
<iscurrent>true</iscurrent>
|
|
| 362 | 362 |
</taxondetermination> |
| 363 | 363 |
<aggregateoccurrence> |
| 364 | 364 |
<individualplant> |
| inputs/SALVIAS/test/VegBIEN.xml.ref | ||
|---|---|---|
| 190 | 190 |
</plantconcept> |
| 191 | 191 |
</plantconcept_id> |
| 192 | 192 |
<determinationtype>Computer (automated)</determinationtype> |
| 193 |
<currentdetermination>true</currentdetermination>
|
|
| 193 |
<iscurrent>true</iscurrent>
|
|
| 194 | 194 |
</taxondetermination> |
| 195 | 195 |
<taxondetermination> |
| 196 | 196 |
<role_id> |
| ... | ... | |
| 211 | 211 |
</plantconcept> |
| 212 | 212 |
</plantconcept_id> |
| 213 | 213 |
<determinationtype>Computer (automated)</determinationtype> |
| 214 |
<currentdetermination>true</currentdetermination>
|
|
| 214 |
<iscurrent>true</iscurrent>
|
|
| 215 | 215 |
</taxondetermination> |
| 216 | 216 |
<taxondetermination> |
| 217 | 217 |
<role_id> |
| ... | ... | |
| 232 | 232 |
</plantconcept> |
| 233 | 233 |
</plantconcept_id> |
| 234 | 234 |
<determinationtype>Computer (automated)</determinationtype> |
| 235 |
<currentdetermination>true</currentdetermination>
|
|
| 235 |
<iscurrent>true</iscurrent>
|
|
| 236 | 236 |
</taxondetermination> |
| 237 | 237 |
<taxondetermination> |
| 238 | 238 |
<role_id> |
| ... | ... | |
| 253 | 253 |
</plantconcept> |
| 254 | 254 |
</plantconcept_id> |
| 255 | 255 |
<determinationtype>Computer (automated)</determinationtype> |
| 256 |
<currentdetermination>true</currentdetermination>
|
|
| 256 |
<iscurrent>true</iscurrent>
|
|
| 257 | 257 |
</taxondetermination> |
| 258 | 258 |
<taxondetermination> |
| 259 | 259 |
<role_id> |
| ... | ... | |
| 274 | 274 |
</plantconcept> |
| 275 | 275 |
</plantconcept_id> |
| 276 | 276 |
<determinationtype>Author</determinationtype> |
| 277 |
<originaldetermination>true</originaldetermination>
|
|
| 278 |
<currentdetermination>true</currentdetermination>
|
|
| 277 |
<isoriginal>true</isoriginal>
|
|
| 278 |
<iscurrent>true</iscurrent>
|
|
| 279 | 279 |
</taxondetermination> |
| 280 | 280 |
<taxondetermination> |
| 281 | 281 |
<role_id> |
| ... | ... | |
| 296 | 296 |
</plantconcept> |
| 297 | 297 |
</plantconcept_id> |
| 298 | 298 |
<determinationtype>Author</determinationtype> |
| 299 |
<originaldetermination>true</originaldetermination>
|
|
| 300 |
<currentdetermination>true</currentdetermination>
|
|
| 299 |
<isoriginal>true</isoriginal>
|
|
| 300 |
<iscurrent>true</iscurrent>
|
|
| 301 | 301 |
</taxondetermination> |
| 302 | 302 |
<specimen> |
| 303 | 303 |
<reference_id> |
| ... | ... | |
| 373 | 373 |
</plantconcept> |
| 374 | 374 |
</plantconcept_id> |
| 375 | 375 |
<determinationtype>Computer (automated)</determinationtype> |
| 376 |
<currentdetermination>true</currentdetermination>
|
|
| 376 |
<iscurrent>true</iscurrent>
|
|
| 377 | 377 |
</taxondetermination> |
| 378 | 378 |
<taxondetermination> |
| 379 | 379 |
<role_id> |
| ... | ... | |
| 394 | 394 |
</plantconcept> |
| 395 | 395 |
</plantconcept_id> |
| 396 | 396 |
<determinationtype>Computer (automated)</determinationtype> |
| 397 |
<currentdetermination>true</currentdetermination>
|
|
| 397 |
<iscurrent>true</iscurrent>
|
|
| 398 | 398 |
</taxondetermination> |
| 399 | 399 |
<taxondetermination> |
| 400 | 400 |
<role_id> |
| ... | ... | |
| 415 | 415 |
</plantconcept> |
| 416 | 416 |
</plantconcept_id> |
| 417 | 417 |
<determinationtype>Computer (automated)</determinationtype> |
| 418 |
<currentdetermination>true</currentdetermination>
|
|
| 418 |
<iscurrent>true</iscurrent>
|
|
| 419 | 419 |
</taxondetermination> |
| 420 | 420 |
<taxondetermination> |
| 421 | 421 |
<role_id> |
| ... | ... | |
| 436 | 436 |
</plantconcept> |
| 437 | 437 |
</plantconcept_id> |
| 438 | 438 |
<determinationtype>Computer (automated)</determinationtype> |
| 439 |
<currentdetermination>true</currentdetermination>
|
|
| 439 |
<iscurrent>true</iscurrent>
|
|
| 440 | 440 |
</taxondetermination> |
| 441 | 441 |
<taxondetermination> |
| 442 | 442 |
<role_id> |
| ... | ... | |
| 457 | 457 |
</plantconcept> |
| 458 | 458 |
</plantconcept_id> |
| 459 | 459 |
<determinationtype>Author</determinationtype> |
| 460 |
<originaldetermination>true</originaldetermination>
|
|
| 461 |
<currentdetermination>true</currentdetermination>
|
|
| 460 |
<isoriginal>true</isoriginal>
|
|
| 461 |
<iscurrent>true</iscurrent>
|
|
| 462 | 462 |
</taxondetermination> |
| 463 | 463 |
<taxondetermination> |
| 464 | 464 |
<role_id> |
| ... | ... | |
| 479 | 479 |
</plantconcept> |
| 480 | 480 |
</plantconcept_id> |
| 481 | 481 |
<determinationtype>Author</determinationtype> |
| 482 |
<originaldetermination>true</originaldetermination>
|
|
| 483 |
<currentdetermination>true</currentdetermination>
|
|
| 482 |
<isoriginal>true</isoriginal>
|
|
| 483 |
<iscurrent>true</iscurrent>
|
|
| 484 | 484 |
</taxondetermination> |
| 485 | 485 |
<specimen> |
| 486 | 486 |
<reference_id> |
| inputs/SALVIAS/maps/VegBIEN.organisms.csv | ||
|---|---|---|
| 18 | 18 |
census_date,/specimen:[*_id/reference]/collectiondate/_*/date, |
| 19 | 19 |
coll_firstname,/specimen:[*_id/reference]/verbatimcollectorname/_name/first,Brad: See comment above |
| 20 | 20 |
coll_lastname,/specimen:[*_id/reference]/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 21 |
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 22 |
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 23 |
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 24 |
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 21 |
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 22 |
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 23 |
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 24 |
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 25 | 25 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first", |
| 26 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
|
|
| 26 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/_name/last",
|
|
| 27 | 27 |
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 28 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
|
|
| 29 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 30 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 28 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes",
|
|
| 29 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 30 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 31 | 31 |
PlotObsID,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
| schemas/vegbien.for_ERD.my.sql | ||
|---|---|---|
| 331 | 331 |
role_id int(11) NOT NULL, |
| 332 | 332 |
determinationtype character varying(30), |
| 333 | 333 |
reference_id int(11), |
| 334 |
originaldetermination int(1) NOT NULL DEFAULT false,
|
|
| 335 |
currentdetermination int(1) NOT NULL DEFAULT false,
|
|
| 334 |
isoriginal int(1) NOT NULL DEFAULT false,
|
|
| 335 |
iscurrent int(1) NOT NULL DEFAULT false,
|
|
| 336 | 336 |
taxonfit character varying(50), |
| 337 | 337 |
taxonconfidence character varying(50), |
| 338 | 338 |
grouptype character varying(20), |
| schemas/vegbien.for_wiki.sql | ||
|---|---|---|
| 123 | 123 |
role_id integer NOT NULL, |
| 124 | 124 |
determinationtype character varying(30), |
| 125 | 125 |
reference_id integer, |
| 126 |
originaldetermination boolean NOT NULL DEFAULT false,
|
|
| 127 |
currentdetermination boolean NOT NULL DEFAULT false,
|
|
| 126 |
isoriginal boolean NOT NULL DEFAULT false,
|
|
| 127 |
iscurrent boolean NOT NULL DEFAULT false,
|
|
| 128 | 128 |
taxonfit character varying(50), |
| 129 | 129 |
taxonconfidence character varying(50), |
| 130 | 130 |
grouptype character varying(20), |
| schemas/vegbien.for_ERD.sql | ||
|---|---|---|
| 331 | 331 |
role_id integer NOT NULL, |
| 332 | 332 |
determinationtype character varying(30), |
| 333 | 333 |
reference_id integer, |
| 334 |
originaldetermination boolean NOT NULL DEFAULT false,
|
|
| 335 |
currentdetermination boolean NOT NULL DEFAULT false,
|
|
| 334 |
isoriginal boolean NOT NULL DEFAULT false,
|
|
| 335 |
iscurrent boolean NOT NULL DEFAULT false,
|
|
| 336 | 336 |
taxonfit character varying(50), |
| 337 | 337 |
taxonconfidence character varying(50), |
| 338 | 338 |
grouptype character varying(20), |
| schemas/vegbien.sql | ||
|---|---|---|
| 2520 | 2520 |
role_id integer NOT NULL, |
| 2521 | 2521 |
determinationtype character varying(30), |
| 2522 | 2522 |
reference_id integer, |
| 2523 |
originaldetermination boolean DEFAULT false NOT NULL,
|
|
| 2524 |
currentdetermination boolean DEFAULT false NOT NULL,
|
|
| 2523 |
isoriginal boolean DEFAULT false NOT NULL,
|
|
| 2524 |
iscurrent boolean DEFAULT false NOT NULL,
|
|
| 2525 | 2525 |
taxonfit character varying(50), |
| 2526 | 2526 |
taxonconfidence character varying(50), |
| 2527 | 2527 |
grouptype character varying(20), |
| mappings/SALVIAS_db-VegBIEN.organisms.csv | ||
|---|---|---|
| 18 | 18 |
census_date,/specimen:[*_id/reference]/collectiondate/_*/date, |
| 19 | 19 |
coll_firstname,/specimen:[*_id/reference]/verbatimcollectorname/_name/first,Brad: See comment above |
| 20 | 20 |
coll_lastname,/specimen:[*_id/reference]/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 21 |
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 22 |
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 23 |
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 24 |
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 21 |
auth,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 22 |
Family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 23 |
Genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 24 |
Species,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 25 | 25 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first", |
| 26 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
|
|
| 26 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/_name/last",
|
|
| 27 | 27 |
cfaff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 28 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
|
|
| 29 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 30 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 28 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes",
|
|
| 29 |
OrigFamily,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 30 |
OrigSpecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 31 | 31 |
PlotObsID,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
| mappings/VegX-VegBIEN.organisms.csv | ||
|---|---|---|
| 99 | 99 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName,"/specimen:[*_id/reference]/{museum_id/party/organizationname,collectioncode_dwc/_namePart/last}"
|
| 100 | 100 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/first,/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/first}
|
| 101 | 101 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/partyWithRole/*ID->/parties/party/organizationName/_name/last,"/specimen:[*_id/reference]/{museum_id/party/organizationname/_name/last,collectioncode_dwc}"
|
| 102 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 103 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 104 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 105 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 102 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 103 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 104 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 105 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 106 | 106 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Rank","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first" |
| 107 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last"
|
|
| 107 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=TaxonomicRankBelowSubspeciesEnum])/Name","/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/_name/last"
|
|
| 108 | 108 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=computer]/note","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue" |
| 109 | 109 |
/*ID->/*s/individualOrganism/simpleUserdefined[name=sex]/value,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=sex]]:[@fkey=tableRecord_ID]/definedvalue" |
| 110 | 110 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/day","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day" |
| 111 | 111 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/month","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month" |
| 112 | 112 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/date/_date/year","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year" |
| 113 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
|
|
| 114 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes"
|
|
| 115 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1"
|
|
| 116 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 117 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 118 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 119 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 120 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 121 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 122 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 123 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 113 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/partyWithRole/*ID->/parties/party/individualName/{givenName/_namePart/{first,middle},surName/_namePart/last}","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}"
|
|
| 114 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/note/text,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes"
|
|
| 115 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonName)/Simple","/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1"
|
|
| 116 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=auth])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 117 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=cl])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 118 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=fam])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 119 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=gen])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 120 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=reg])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 121 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ord])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 122 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=sp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 123 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=phyl_div])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname"
|
|
| 124 | 124 |
"/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept->/*s/taxonDetermination[*ID,partyWithRole/role=identifier]/*s/taxonRelationshipAssertion(/assertion/*ID->/*s/taxonConcept[Rank/@code=ssp])/Name","/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname" |
| 125 | 125 |
/*ID->/*s/individualOrganism/*sID->/*s/taxonNameUsageConcept/voucher,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}"
|
| mappings/NYBG-VegBIEN.organisms.csv | ||
|---|---|---|
| 27 | 27 |
DayIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/day", |
| 28 | 28 |
MonthIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/month", |
| 29 | 29 |
YearIdentified,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/determinationdate/_date/year", |
| 30 |
IdentifiedBy,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
|
|
| 31 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes"
|
|
| 32 |
ScientificName,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?"
|
|
| 33 |
ScientificNameAuthor,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
|
|
| 34 |
Class,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 35 |
Family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 36 |
Genus,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 37 |
Kingdom,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 38 |
Order,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 39 |
Species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 40 |
Phylum,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 30 |
IdentifiedBy,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/*_id/party/{givenname/_namePart/first,middlename/_namePart/middle,surname/_namePart/last}",Brad: Bob: does this look correct for VegBank?
|
|
| 31 |
Notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes","Brad: mapping OK; NY appears to be using this field for almost anything, but mostly internal collections notes"
|
|
| 32 |
ScientificName,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname/_alt/1","Brad: Bob, Nick, please is this mapping OK?"
|
|
| 33 |
ScientificNameAuthor,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname","Brad: Mapping probably incorrect. This DwC element refers to scientific name author; does not correspond to the VegBank and VegX elements you have listed (Bob, Nick�where does name author belong in VegBank and VegX?); Aaron: The mapped VegX element is the author linked to the taxon name, so it seems like this is the scientific name author"
|
|
| 34 |
Class,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Class]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 35 |
Family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 36 |
Genus,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 37 |
Kingdom,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Kingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 38 |
Order,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Order]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 39 |
Species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 40 |
Phylum,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subkingdom]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 41 | 41 |
Subspecies,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/*_id/*/plantname", |
| 42 | 42 |
UniqueNYInternalRecordNumber,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: OMIT; Aaron: We need this field because it is the only ID column with an entry in every row; Brad: OK, use this as primary key"
|
| mappings/SALVIAS-VegBIEN.organisms.csv | ||
|---|---|---|
| 27 | 27 |
coll_number,/specimen:[*_id/reference]/catalognumber_dwc,Brad: Incorrect. Map instead as for voucher_string |
| 28 | 28 |
coll_firstname,/specimen:[*_id/reference]/verbatimcollectorname/_name/first,Brad: See comment above |
| 29 | 29 |
coll_lastname,/specimen:[*_id/reference]/verbatimcollectorname/_name/last,"Brad: Correct for VegBank. This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick." |
| 30 |
specific_authority,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 31 |
family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 32 |
genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 33 |
specific_epithet,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 30 |
specific_authority,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Authority]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: Incorrect. This is the author of the scientificName. The should be a place for this in the taxonomic name elements of VegB and VegX. Let's discuss.
|
|
| 31 |
family,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 32 |
genus,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Genus]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 33 |
specific_epithet,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/*_id/*/plantname",
|
|
| 34 | 34 |
infra_rank_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]/*_id/plantconcept/_name/first", |
| 35 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",currentdetermination=true]/*_id/plantconcept/_name/last",
|
|
| 35 |
infra_ep_1,"/taxondetermination[*_id/role/rolecode=computer,*_id/plantconcept/plantstatus/plantlevel=Subspecies]:[determinationtype=""Computer (automated)"",iscurrent=true]/*_id/plantconcept/_name/last",
|
|
| 36 | 36 |
cf_aff,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]/definedvalue[*_id/userdefined[tablename=taxondetermination,userdefinedname=cfAff]]:[@fkey=tableRecord_ID]/definedvalue","Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank." |
| 37 |
notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,currentdetermination=true]/notes",
|
|
| 38 |
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 39 |
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,originaldetermination=true,currentdetermination=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 37 |
notes,"/taxondetermination[*_id/role/rolecode=identifier,!*_id/plantconcept]:[determinationtype=Author,iscurrent=true]/notes",
|
|
| 38 |
orig_family,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Family]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 39 |
orig_species,"/taxondetermination[*_id/role/rolecode=identifier,*_id/plantconcept/plantstatus/plantlevel=Species]:[determinationtype=Author,isoriginal=true,iscurrent=true]/*_id/plantconcept/*_id/*/plantname",Brad: OMIT
|
|
| 40 | 40 |
OBSERVATION_ID,"/{aggregateoccurrence/individualplant/authorplantcode,specimen:[*_id/reference]/sourceaccessioncode}","Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
|
Also available in: Unified diff
VegBIEN: Renamed taxondetermination.*determination to is*