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Revision 6346

Added inputs/WIN/

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inputs/WIN/Specimen/map.csv
1
WIN,VegCore,Filter,Comments
2
id,occurrenceID,,
3
municipality,municipality,,
4
verbatimLongitude,verbatimLongitude,,
5
rightsHolder,dcterms:rightsHolder,,
6
scientificNameAuthorship,scientificNameAuthorship,,
7
associatedMedia,associatedMedia,,
8
verbatimSRS,verbatimSRS,,
9
dateIdentified,dateIdentified,,
10
datasetID,datasetID,,
11
bibliographicCitation,dcterms:bibliographicCitation,,
12
taxonRank,taxonRank,,
13
rights,dcterms:rights,,
14
occurrenceRemarks,occurrenceRemarks,,
15
verbatimElevation,verbatimElevation,,
16
eventDate,eventDate,,
17
recordNumber,recordNumber,,
18
county,county,,
19
type,dcterms:type,,
20
stateProvince,stateProvince,,
21
locality,locality,,
22
scientificName,scientificName,,
23
country,country,,
24
specificEpithet,specificEpithet,,
25
coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
26
verbatimEventDate,verbatimEventDate,,
27
habitat,habitat,,
28
identifiedBy,identifiedBy,,
29
minimumElevationInMeters,minimumElevationInMeters,,
30
datasetName,datasetName,,
31
basisOfRecord,basisOfRecord,,
32
collectionID,collectionID,,
33
collectionCode,collectionCode,,
34
verbatimCoordinates,verbatimCoordinates,,
35
decimalLatitude,decimalLatitude,,
36
institutionCode,institutionCode,,
37
catalogNumber,catalogNumber,,
38
verbatimLatitude,verbatimLatitude,,
39
identificationRemarks,identificationRemarks,,
40
nomenclaturalCode,nomenclaturalCode,,
41
recordedBy,recordedBy,,
42
infraspecificEpithet,infraspecificEpithet,,
43
kingdom,kingdom,,
44
decimalLongitude,decimalLongitude,,
45
genus,genus,,
46
verbatimCoordinateSystem,verbatimCoordinateSystem,,
47
language,dcterms:language,,
48
geodeticDatum,geodeticDatum,,
49
ownerInstitutionCode,ownerInstitutionCode,,
inputs/WIN/Specimen/VegBIEN.csv
1
WIN,VegBIEN:/_simplifyPath:[next=parent_id]/path,Comments
2
id,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
3
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/cond/_exists",
4
institutionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1",
5
collectionCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/1",
6
collectionID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/2/_join/2",
7
catalogNumber,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/3/_if[@name=""if indirect voucher""]/else",
8
verbatimElevation,"/location/elevation_m/_alt/1/_units:[to=m,to=]/value",
9
minimumElevationInMeters,/location/elevation_m/_alt/2/_avg/min,
10
id,"/location/iscultivated/_if[@name=""if TaxonOccurrence""]/cond/_exists",
11
recordNumber,"/location/iscultivated/_if[@name=""if TaxonOccurrence""]/cond/_exists",
12
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
13
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/2/_dateRangeEnd/value",
14
eventDate,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/2/_dateRangeStart/value",
15
eventDate,/location/locationevent/obsenddate/_alt/2/_dateRangeEnd/value,
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eventDate,/location/locationevent/obsstartdate/_alt/2/_dateRangeStart/value,
17
recordNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
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catalogNumber,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/else",
19
collectionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/1,Brad: Not sure if mapping correct. DwC element; code for entire collection; often same as InstitutionCode; Aaron: Combining with InstitutionCode to create collection name
20
collectionID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/collectioncode_dwc/_join/2,
21
institutionCode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/name,
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id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
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recordNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1",
24
scientificName,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2",
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recordedBy,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
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id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
27
recordNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
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id,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
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identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
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scientificName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/1",
31
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
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infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
35
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2",
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scientificNameAuthorship,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2",
37
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/creationdate/_alt/1/_dateRangeStart/value,
38
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/rank",
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taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/_if[@name=""if has explicit parent""]/else/taxonverbatim/verbatimrank",
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specificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
41
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
42
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
43
kingdom,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,family,order,class,phylum,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=kingdom]/taxonepithet",
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infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/taxonepithet,
45
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/rank,
46
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonepithet/_if[@name=""if taxonomic name is epithet""]/cond/_alt:[2=true]/1/_taxonomic_name_is_epithet/rank",
47
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/1,
48
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2,
49
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
50
infraspecificEpithet,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/cond",
51
taxonRank,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/1/_if[@name=""if has infraspecificEpithet""]/then",
52
infraspecificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/5/_join_words/2,
53
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/2,
54
scientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
55
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
56
specificEpithet,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
57
scientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
58
taxonRank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/verbatimrank,
59
dateIdentified,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/determinationdate/_alt/1/_dateRangeStart/value,
60
catalogNumber,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then",
61
locality,/location/locationnarrative/_merge/1,
62
habitat,"/location/locationnarrative/_merge/3/_label[label=""habitat""]/value","Brad: Free-text description of vegetation community where collected, frequently redundane wrt 'Vegetation'. Bob, Nick: keep as user defined or create special element?"
63
coordinateUncertaintyInMeters,/location/locationplace/*_id/place/*_id/coordinates/coordsaccuracy_m/_noCV/value,
64
decimalLatitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
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decimalLongitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
66
verbatimLatitude,/location/locationplace/*_id/place/*_id/coordinates/verbatimlatitude,
67
verbatimLongitude,/location/locationplace/*_id/place/*_id/coordinates/verbatimlongitude,
68
country,/location/locationplace/*_id/place/country,
69
county,/location/locationplace/*_id/place/county,
70
decimalLatitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
71
decimalLongitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
72
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
73
county,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
74
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
75
stateProvince,/location/locationplace/*_id/place/stateprovince,
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verbatimElevation,/location/verbatimelevation,
77
associatedMedia,,** No join mapping for associatedMedia ** 
78
basisOfRecord,,** No join mapping for basisOfRecord ** 
79
bibliographicCitation,,** No join mapping for dcterms:bibliographicCitation ** 
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datasetID,,** No join mapping for datasetID ** 
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datasetName,,** No join mapping for datasetName ** 
82
geodeticDatum,,** No join mapping for geodeticDatum ** 
83
identificationRemarks,,** No join mapping for identificationRemarks ** 
84
language,,** No join mapping for dcterms:language ** 
85
municipality,,** No join mapping for municipality ** 
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nomenclaturalCode,,** No join mapping for nomenclaturalCode ** 
87
occurrenceRemarks,,** No join mapping for occurrenceRemarks ** 
88
ownerInstitutionCode,,** No join mapping for ownerInstitutionCode ** 
89
rights,,** No join mapping for dcterms:rights ** 
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rightsHolder,,** No join mapping for dcterms:rightsHolder ** 
91
type,,** No join mapping for dcterms:type ** 
92
verbatimCoordinateSystem,,** No join mapping for verbatimCoordinateSystem ** 
93
verbatimCoordinates,,** No join mapping for verbatimCoordinates ** 
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verbatimEventDate,,** No join mapping for verbatimEventDate ** 
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verbatimSRS,,** No join mapping for verbatimSRS ** 
inputs/WIN/Specimen/test.xml.ref
1
Put template:
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<VegBIEN>
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    <_simplifyPath id="-1">
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        <next>parent_id</next>
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        <path>
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            <location>
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                <authorlocationcode>
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                    <_alt>
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                        <1>$id</1>
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                        <2>
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                            <_join>
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                                <1>$institutionCode</1>
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                                <2>
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                                    <_join>
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                                        <1>$collectionCode</1>
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                                        <2>$collectionID</2>
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                                    </_join>
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                                </2>
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                                <3>$catalogNumber</3>
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                            </_join>
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                        </2>
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                    </_alt>
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                </authorlocationcode>
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                <elevation_m>
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                    <_alt>
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                        <1>
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                            <_units>
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                                <to>m</to>
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                                <to></to>
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                                <value>$verbatimElevation</value>
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                            </_units>
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                        </1>
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                        <2><_avg><min>$minimumElevationInMeters</min></_avg></2>
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                    </_alt>
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                </elevation_m>
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                <locationevent>
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                    <obsenddate><_dateRangeEnd><value>$eventDate</value></_dateRangeEnd></obsenddate>
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                    <obsstartdate><_dateRangeStart><value>$eventDate</value></_dateRangeStart></obsstartdate>
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                    <taxonoccurrence>
40
                        <aggregateoccurrence>
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                            <plantobservation>
42
                                <collectionnumber>$recordNumber</collectionnumber>
43
                                <specimenreplicate>
44
                                    <catalognumber_dwc>$catalogNumber</catalognumber_dwc>
45
                                    <collectioncode_dwc>
46
                                        <_join>
47
                                            <1>$collectionCode</1>
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                                            <2>$collectionID</2>
49
                                        </_join>
50
                                    </collectioncode_dwc>
51
                                    <institution_id><sourcename><name>$institutionCode</name></sourcename></institution_id>
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                                    <sourceaccessioncode>$id</sourceaccessioncode>
53
                                </specimenreplicate>
54
                            </plantobservation>
55
                        </aggregateoccurrence>
56
                        <collector_id><party><fullname>$recordedBy</fullname></party></collector_id>
57
                        <sourceaccessioncode>$id</sourceaccessioncode>
58
                        <taxondetermination>
59
                            <party_id><party><fullname>$identifiedBy</fullname></party></party_id>
60
                            <taxonverbatim_id>
61
                                <taxonverbatim>
62
                                    <taxonlabel_id>
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                                        <taxonlabel>
64
                                            <matched_label_id>
65
                                                <taxonlabel>
66
                                                    <source_id><source><shortname>TNRS</shortname></source></source_id>
67
                                                    <taxonomicname>
68
                                                        <_alt>
69
                                                            <1>$scientificName</1>
70
                                                            <2>
71
                                                                <_join_words>
72
                                                                    <1>
73
                                                                        <_join_words>
74
                                                                            <2>$genus</2>
75
                                                                            <3>$specificEpithet</3>
76
                                                                            <5>
77
                                                                                <_join_words>
78
                                                                                    <1>
79
                                                                                        <_if name="if has infraspecificEpithet">
80
                                                                                            <cond>$infraspecificEpithet</cond>
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                                                                                            <then>$taxonRank</then>
82
                                                                                        </_if>
83
                                                                                    </1>
84
                                                                                    <2>$infraspecificEpithet</2>
85
                                                                                </_join_words>
86
                                                                            </5>
87
                                                                        </_join_words>
88
                                                                    </1>
89
                                                                    <2>$scientificNameAuthorship</2>
90
                                                                </_join_words>
91
                                                            </2>
92
                                                        </_alt>
93
                                                    </taxonomicname>
94
                                                </taxonlabel>
95
                                            </matched_label_id>
96
                                            <creationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></creationdate>
97
                                            <parent_id>
98
                                                <taxonlabel>
99
                                                    <rank>$taxonRank</rank>
100
                                                    <taxonverbatim><verbatimrank>$taxonRank</verbatimrank></taxonverbatim>
101
                                                    <parent_id>
102
                                                        <taxonlabel>
103
                                                            <rank>cultivar</rank>
104
                                                            <parent_id>
105
                                                                <taxonlabel>
106
                                                                    <rank>forma</rank>
107
                                                                    <parent_id>
108
                                                                        <taxonlabel>
109
                                                                            <rank>variety</rank>
110
                                                                            <parent_id>
111
                                                                                <taxonlabel>
112
                                                                                    <rank>subspecies</rank>
113
                                                                                    <parent_id>
114
                                                                                        <taxonlabel>
115
                                                                                            <rank>species</rank>
116
                                                                                            <taxonepithet>$specificEpithet</taxonepithet>
117
                                                                                            <parent_id>
118
                                                                                                <taxonlabel>
119
                                                                                                    <rank>genus</rank>
120
                                                                                                    <taxonepithet>$genus</taxonepithet>
121
                                                                                                    <parent_id>
122
                                                                                                        <taxonlabel>
123
                                                                                                            <rank>family</rank>
124
                                                                                                            <parent_id>
125
                                                                                                                <taxonlabel>
126
                                                                                                                    <rank>order</rank>
127
                                                                                                                    <parent_id>
128
                                                                                                                        <taxonlabel>
129
                                                                                                                            <rank>class</rank>
130
                                                                                                                            <parent_id>
131
                                                                                                                                <taxonlabel>
132
                                                                                                                                    <rank>phylum</rank>
133
                                                                                                                                    <parent_id>
134
                                                                                                                                        <taxonlabel>
135
                                                                                                                                            <rank>kingdom</rank>
136
                                                                                                                                            <taxonepithet>$kingdom</taxonepithet>
137
                                                                                                                                        </taxonlabel>
138
                                                                                                                                    </parent_id>
139
                                                                                                                                </taxonlabel>
140
                                                                                                                            </parent_id>
141
                                                                                                                        </taxonlabel>
142
                                                                                                                    </parent_id>
143
                                                                                                                </taxonlabel>
144
                                                                                                            </parent_id>
145
                                                                                                        </taxonlabel>
146
                                                                                                    </parent_id>
147
                                                                                                </taxonlabel>
148
                                                                                            </parent_id>
149
                                                                                        </taxonlabel>
150
                                                                                    </parent_id>
151
                                                                                </taxonlabel>
152
                                                                            </parent_id>
153
                                                                        </taxonlabel>
154
                                                                    </parent_id>
155
                                                                </taxonlabel>
156
                                                            </parent_id>
157
                                                        </taxonlabel>
158
                                                    </parent_id>
159
                                                    <taxonepithet>$infraspecificEpithet</taxonepithet>
160
                                                </taxonlabel>
161
                                            </parent_id>
162
                                            <rank>$taxonRank</rank>
163
                                            <taxonomicname>
164
                                                <_alt>
165
                                                    <1>$scientificName</1>
166
                                                    <2>
167
                                                        <_join_words>
168
                                                            <1>
169
                                                                <_join_words>
170
                                                                    <2>$genus</2>
171
                                                                    <3>$specificEpithet</3>
172
                                                                    <5>
173
                                                                        <_join_words>
174
                                                                            <1>
175
                                                                                <_if name="if has infraspecificEpithet">
176
                                                                                    <cond>$infraspecificEpithet</cond>
177
                                                                                    <then>$taxonRank</then>
178
                                                                                </_if>
179
                                                                            </1>
180
                                                                            <2>$infraspecificEpithet</2>
181
                                                                        </_join_words>
182
                                                                    </5>
183
                                                                </_join_words>
184
                                                            </1>
185
                                                            <2>$scientificNameAuthorship</2>
186
                                                        </_join_words>
187
                                                    </2>
188
                                                </_alt>
189
                                            </taxonomicname>
190
                                        </taxonlabel>
191
                                    </taxonlabel_id>
192
                                    <author>$scientificNameAuthorship</author>
193
                                    <genus>$genus</genus>
194
                                    <specific_epithet>$specificEpithet</specific_epithet>
195
                                    <taxonomicname>$scientificName</taxonomicname>
196
                                    <verbatimrank>$taxonRank</verbatimrank>
197
                                </taxonverbatim>
198
                            </taxonverbatim_id>
199
                            <determinationdate><_dateRangeStart><value>$dateIdentified</value></_dateRangeStart></determinationdate>
200
                        </taxondetermination>
201
                    </taxonoccurrence>
202
                </locationevent>
203
                <locationnarrative>
204
                    <_merge>
205
                        <1>$locality</1>
206
                        <3>
207
                            <_label>
208
                                <label>habitat</label>
209
                                <value>$habitat</value>
210
                            </_label>
211
                        </3>
212
                    </_merge>
213
                </locationnarrative>
214
                <locationplace>
215
                    <place_id>
216
                        <place>
217
                            <coordinates_id>
218
                                <coordinates>
219
                                    <coordsaccuracy_m><_noCV><value>$coordinateUncertaintyInMeters</value></_noCV></coordsaccuracy_m>
220
                                    <latitude_deg>
221
                                        <_nullIf>
222
                                            <null>0</null>
223
                                            <type>float</type>
224
                                            <value>$decimalLatitude</value>
225
                                        </_nullIf>
226
                                    </latitude_deg>
227
                                    <longitude_deg>
228
                                        <_nullIf>
229
                                            <null>0</null>
230
                                            <type>float</type>
231
                                            <value>$decimalLongitude</value>
232
                                        </_nullIf>
233
                                    </longitude_deg>
234
                                    <verbatimlatitude>$verbatimLatitude</verbatimlatitude>
235
                                    <verbatimlongitude>$verbatimLongitude</verbatimlongitude>
236
                                </coordinates>
237
                            </coordinates_id>
238
                            <country>$country</country>
239
                            <county>$county</county>
240
                            <matched_place_id>
241
                                <place>
242
                                    <source_id><source><shortname>geoscrub</shortname></source></source_id>
243
                                    <coordinates_id>
244
                                        <coordinates>
245
                                            <source_id><source><shortname>geoscrub</shortname></source></source_id>
246
                                            <latitude_deg>
247
                                                <_nullIf>
248
                                                    <null>0</null>
249
                                                    <type>float</type>
250
                                                    <value>$decimalLatitude</value>
251
                                                </_nullIf>
252
                                            </latitude_deg>
253
                                            <longitude_deg>
254
                                                <_nullIf>
255
                                                    <null>0</null>
256
                                                    <type>float</type>
257
                                                    <value>$decimalLongitude</value>
258
                                                </_nullIf>
259
                                            </longitude_deg>
260
                                        </coordinates>
261
                                    </coordinates_id>
262
                                    <country>$country</country>
263
                                    <county>$county</county>
264
                                    <stateprovince>$stateProvince</stateprovince>
265
                                </place>
266
                            </matched_place_id>
267
                            <stateprovince>$stateProvince</stateprovince>
268
                        </place>
269
                    </place_id>
270
                </locationplace>
271
                <verbatimelevation>$verbatimElevation</verbatimelevation>
272
            </location>
273
        </path>
274
    </_simplifyPath>
275
</VegBIEN>
276
Inserted 36 new rows into database
inputs/WIN/Specimen/unmapped_terms.csv
1
municipality
2
dcterms:rightsHolder
3
associatedMedia
4
verbatimSRS
5
datasetID
6
dcterms:bibliographicCitation
7
dcterms:rights
8
occurrenceRemarks
9
dcterms:type
10
verbatimEventDate
11
datasetName
12
basisOfRecord
13
verbatimCoordinates
14
identificationRemarks
15
nomenclaturalCode
16
verbatimCoordinateSystem
17
dcterms:language
18
geodeticDatum
19
ownerInstitutionCode

Also available in: Unified diff