|
1
|
#!/bin/bash
|
|
2
|
# Imports all inputs at once
|
|
3
|
|
|
4
|
import_all_main ()
|
|
5
|
{
|
|
6
|
local self="${BASH_SOURCE[0]}"
|
|
7
|
local selfDir="$(dirname -- "$self")"
|
|
8
|
cd "$selfDir/.."
|
|
9
|
|
|
10
|
if test "${BASH_LINENO[1]}" = 0; then # was run without initial "."
|
|
11
|
echo "Usage: . $self [vars...] (note initial \".\")"|fold -s >&2
|
|
12
|
return 2
|
|
13
|
fi
|
|
14
|
|
|
15
|
make inputs/.TNRS/tnrs_accepted/reinstall
|
|
16
|
make inputs/.TNRS/tnrs_other/reinstall
|
|
17
|
|
|
18
|
make inputs/.herbaria/import "$@" &
|
|
19
|
sleep 5 # wait for make commands to scroll by
|
|
20
|
|
|
21
|
make inputs/.geoscrub/import "$@" &
|
|
22
|
sleep 5 # wait for make commands to scroll by
|
|
23
|
|
|
24
|
make inputs/.NCBI/import by_col=1 "$@"
|
|
25
|
# Must come after NCBI for cross links to be made
|
|
26
|
make inputs/.TNRS/import "$@"
|
|
27
|
|
|
28
|
wait %1 # wait for asynchronous commands
|
|
29
|
|
|
30
|
make inputs/.TNRS/tnrs/tnrs-remake wait=1 "$@" &
|
|
31
|
. "$selfDir/with_all" import "$@"
|
|
32
|
|
|
33
|
after_import ()
|
|
34
|
{
|
|
35
|
bin/make_analytical_db
|
|
36
|
}
|
|
37
|
|
|
38
|
jobs="$(jobs -p)"
|
|
39
|
(bin/waitpid $jobs; after_import) &
|
|
40
|
}
|
|
41
|
import_all_main "$@"
|
