Project

General

Profile

1
bien_web,"VegBIEN:/_setDefault:[col=source_id,value/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path",Comments
2
plotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
3
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
4
observationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/1",
5
observationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
6
dataSourceName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",
7
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else",
8
plotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
9
plotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
10
plotAreaHa,/location/area_m2/_ha_to_m2/value,
11
elevation_m,/location/elevation_m/_alt/1,
12
collectionNumber,"/location/iscultivated/_if[@name=""if TaxonOccurrence""]/cond/_exists",
13
observationID,"/location/iscultivated/_if[@name=""if TaxonOccurrence""]/cond/_exists",
14
isCultivated,"/location/iscultivated/_if[@name=""if TaxonOccurrence""]/else/_alt/2",
15
plotMethod,/location/locationevent/*_id/method/name,
16
plotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",
17
plotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then",
18
observationDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
19
pctCover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
20
collectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/collectionnumber,
21
observationID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/_if[@name=""if specimen""]/cond/_exists",
22
dataSourceName,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/_if[@name=""if specimen""]/then/matched_source_id/source/shortname",
23
dataSourceName,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcename/_if[@name=""if specimen""]/then/name",
24
observationID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
25
plotCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
26
plotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
27
collectionNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/1",
28
taxon,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/2",
29
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
30
collectionNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
31
observationID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
32
isCultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/2",
33
observationID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
34
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
35
taxon,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/1/_taxon_family_require_std/family/_nullIf/null/_first/2",
36
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/1/_taxon_family_require_std/family/_nullIf/value",
37
taxon,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/1",
38
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2",
39
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
40
taxonAuthor,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2",
41
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
42
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
43
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
44
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
45
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
46
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/1/_taxon_family_require_std/family/_nullIf/null/_first/2,
47
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/1/_taxon_family_require_std/family/_nullIf/value,
48
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/1,
49
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2,
50
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
51
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/2,
52
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
53
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
54
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
55
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
56
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
57
latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
58
longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
59
country,/location/locationplace/*_id/place/country,
60
countyParish,/location/locationplace/*_id/place/county,
61
latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
62
longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
63
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
64
countyParish,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
65
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
66
stateProvince,/location/locationplace/*_id/place/stateprovince,
67
plotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
68
plotCode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
69
observationID,"/source/shortname/_if[@name=""if specimen""]/cond/_exists",
70
dataSourceName,"/source/shortname/_if[@name=""if specimen""]/else",
71
abund,,** No join mapping for *abund ** 
72
abund1,,** No join mapping for *abund1 ** 
73
abund10,,** No join mapping for *abund10 ** 
74
abund2.5,,** No join mapping for *abund2.5 ** 
75
acceptance,,** No join mapping for *acceptance ** 
76
acceptance_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
77
bien2_DBPlotID,,** No join mapping for *bien2_DBPlotID ** 
78
bien2_DBPlotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
79
bien2_ObservationID,,** No join mapping for *bien2_ObservationID ** 
80
bien2_ObservationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
81
bien2_OccurID,,** No join mapping for *bien2_OccurID ** 
82
bien2_OccurID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
83
bien2_TraitObservationID,,** No join mapping for *bien2_TraitObservationID ** 
84
bien2_TraitObservationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
85
bien2_taxonomyID,,** No join mapping for *bien2_taxonomyID ** 
86
bien2_taxonomyID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
87
collector_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
88
countryError,,** No join mapping for *countryError ** 
89
country_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
90
dataSourceID,,** No join mapping for *dataSourceID ** 
91
dataSourceID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
92
dataSourceNamePrimary,,** No join mapping for *dataSourceNamePrimary ** 
93
dataSourceNamePrimary_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
94
dataSourceName_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
95
family_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
96
genus_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
97
higherPlantGroup,,** No join mapping for higherPlantGroup ** 
98
higherPlantGroup_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
99
identifiedBy_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
100
isCultivatedReason,,** No join mapping for cultivatedBasis ** 
101
isCultivatedReason_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
102
isCultivated_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
103
isGeovalid,,** No join mapping for *isGeovalid ** 
104
isGeovalid_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
105
isNewWorld,,** No join mapping for isNewWorld ** 
106
isNewWorld_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
107
isValidLatLong,,** No join mapping for *isValidLatLong ** 
108
isValidLatLong_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
109
localityDescription,,** No join mapping for *localityDescription ** 
110
observationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
111
observationType,,** No join mapping for *observationType ** 
112
observationType_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
113
plotAreaHa_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
114
plotCode_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
115
plotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
116
plotMethod_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
117
plotMinDbh,,** No join mapping for *plotMinDbh ** 
118
plotMinDbh_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
119
rank,,** No join mapping for *rank ** 
120
rank_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
121
species_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
122
stateProvinceError,,** No join mapping for *stateProvinceError ** 
123
stateProvince_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
124
taxonAuthor_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
125
taxonAuthorityVerbatim,,** No join mapping for *taxonAuthorityVerbatim ** 
126
taxonAuthorityVerbatim_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
127
taxonMorphospecies,,** No join mapping for scientificNameWithMorphospecies ** 
128
taxonMorphospecies_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
129
taxon_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
130
traitMethod,,** No join mapping for *traitMethod ** 
131
traitMethod_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
132
traitName,,** No join mapping for *traitName ** 
133
traitName_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
134
traitUnit,,** No join mapping for *traitUnit ** 
135
traitUnit_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
136
traitValue,,** No join mapping for *traitValue ** 
(2-2/7)