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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 4751 about 12 years Aaron Marcuse-Kubitza backups/Makefile: Backups: Full DB: Specify the...
  bin 6404 about 12 years Aaron Marcuse-Kubitza bin/map: update_in_label(): Removed hardcoded s...
  config 6321 about 12 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 6413 about 12 years Aaron Marcuse-Kubitza db_xml.py: put(): _setDefault(): Delay the eval...
  lib 6420 about 12 years Aaron Marcuse-Kubitza lib/PostgreSQL-MySQL.csv: Statements ending in ...
  mappings 6409 about 12 years Aaron Marcuse-Kubitza mappings/VegCore-VegBIEN.csv: source table mapp...
  schemas 6425 about 12 years Aaron Marcuse-Kubitza schemas/vegbien.sql: analytical_* pkeys: Added ...
  to_do 4524 about 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 12 KB 6337 about 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: $(postgresReload-Lin...
README.TXT 14.6 KB 6373 about 12 years Aaron Marcuse-Kubitza README.TXT: Datasource setup: Add input data fo...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 about 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 about 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
6425 11/24/2012 11:59 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_* pkeys: Added dateCollected because the records are actually unique within the location*event*, not the location

6424 11/24/2012 11:57 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: Exclude records with no collectiondate or obsstartdate, which is required to uniquely identify a record

6423 11/24/2012 11:54 AM Aaron Marcuse-Kubitza

analytical_stem_view: dateCollected: Use locationevent.obsstartdate when aggregateoccurrence.collectiondate is not provided

6422 11/24/2012 11:37 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: Include only the current taxondetermination for each taxonoccurrence, to avoid cross-joining taxondeterminations with stems and thus multiplying the number of rows for datasources that have multiple taxondeterminations per taxonoccurrence

6421 11/24/2012 11:33 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination: Added AFTER trigger to set the current taxondetermination for the taxonoccurrence

6420 11/24/2012 11:11 AM Aaron Marcuse-Kubitza

lib/PostgreSQL-MySQL.csv: Statements ending in ";": When matching any character, use .*? (with the (?s) flag) instead of [^;]* in order to allow embedded ; to be matched. This fixes a bug where a CREATE VIEW statement was not removed because it contained an embedded ; .

6419 11/24/2012 11:06 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: taxondetermination: Added unique index to ensure that there is only one current determination for each taxonoccurrence

6418 11/24/2012 11:05 AM Aaron Marcuse-Kubitza

lib/PostgreSQL-MySQL.csv: Remove indexes with WHERE clauses

6417 11/24/2012 10:34 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_aggregate: Added primary key on institutionCode, plotName, scientificNameWithMorphospecies, recordNumber. Note that this makes these fields NOT NULL, which should not be a problem because there are inner joins instead of LEFT JOINs on most of the tables which provide them, and LEFT JOINed tables have their identifying fields combined to create a NOT NULL value.

6416 11/24/2012 10:27 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: recordNumber: Combine identifying fields in taxonoccurrence, plantobservation, and stemobservation to ensure that this field is unique within the plot and not NULL

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