Revision 6438
Added by Aaron Marcuse-Kubitza about 12 years ago
schemas/vegbien.sql | ||
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CREATE VIEW analytical_stem_view AS |
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SELECT source.shortname AS "institutionCode", canon_place.country, canon_place.stateprovince AS "stateProvince", datasource_place.county, coordinates.latitude_deg AS "decimalLatitude", coordinates.longitude_deg AS "decimalLongitude", coordinates.coordsaccuracy_m AS "coordinateUncertaintyInMeters", canon_place.geovalid, "newWorldCountries"."isNewWorld", _m_to_km(canon_place.distance_to_country_m) AS "distanceToCountry_km", _m_to_km(canon_place.distance_to_state_m) AS "distanceToStateProvince_km", location.sourceaccessioncode AS "plotName", location.elevation_m AS "elevationInMeters", _m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", COALESCE(locationevent.obsstartdate, aggregateoccurrence.collectiondate) AS "dateCollected", family_higher_plant_group.higher_plant_group AS "higherPlantGroup", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.specific_epithet) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.taxonname) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", CASE WHEN (accepted_taxonlabel.rank = 'family'::taxonrank) THEN accepted_taxonverbatim.family ELSE NULLIF(array_to_string(ARRAY[accepted_taxonverbatim.genus, COALESCE(parsed_taxonverbatim.specific_epithet, parsed_taxonverbatim.morphospecies)], ' '::text), ''::text) END AS "scientificNameWithMorphospecies", (threatened_taxonlabel.taxonlabel_id IS NOT NULL) AS threatened, NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", taxonoccurrence.growthform AS "growthForm", COALESCE((taxonoccurrence.iscultivated OR (cultivated_family_locations.country IS NOT NULL)), location.iscultivated, (geoscrub_cultivated."isCultivated")::boolean) AS cultivated, CASE WHEN (taxonoccurrence.iscultivated IS NOT NULL) THEN taxonoccurrence.cultivatedbasis WHEN (location.iscultivated IS NOT NULL) THEN NULL::text ELSE (geoscrub_cultivated."isCultivatedReason" || ''::text) END AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", _m_to_cm(stemobservation.diameterbreastheight_m) AS "diameterBreastHeight_cm", stemobservation.height_m, stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", collector.fullname AS "recordedBy", plantobservation.collectionnumber AS "recordNumber" FROM ((((((((((((((((((((((((((source JOIN location USING (source_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN place datasource_place USING (place_id)) LEFT JOIN place canon_place ON ((canon_place.place_id = datasource_place.canon_place_id))) LEFT JOIN coordinates ON ((coordinates.coordinates_id = canon_place.coordinates_id))) LEFT JOIN geoscrub.geoscrub_cultivated ON (((geoscrub_cultivated."latitudeDecimalVerbatim" = coordinates.latitude_deg) AND (geoscrub_cultivated."longitudeDecimalVerbatim" = coordinates.longitude_deg)))) LEFT JOIN "newWorld".iso_code_gadm ON ((iso_code_gadm."GADM country" = canon_place.country))) LEFT JOIN "newWorld"."newWorldCountries" ON ((("newWorldCountries"."isoCode")::text = iso_code_gadm."2-digit iso code"))) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) LEFT JOIN party collector ON ((collector.party_id = taxonoccurrence.collector_id))) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim datasource_taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) LEFT JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) LEFT JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN threatened_taxonlabel ON ((threatened_taxonlabel.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN family_higher_plant_group ON ((family_higher_plant_group.family = accepted_taxonverbatim.family))) LEFT JOIN cultivated_family_locations ON (((cultivated_family_locations.family = accepted_taxonverbatim.family) AND (cultivated_family_locations.country = canon_place.country)))) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) WHERE (taxondetermination.iscurrent AND (COALESCE(locationevent.obsstartdate, aggregateoccurrence.collectiondate) IS NOT NULL));
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SELECT source.shortname AS "institutionCode", canon_place.country, canon_place.stateprovince AS "stateProvince", datasource_place.county, coordinates.latitude_deg AS "decimalLatitude", coordinates.longitude_deg AS "decimalLongitude", coordinates.coordsaccuracy_m AS "coordinateUncertaintyInMeters", canon_place.geovalid, "newWorldCountries"."isNewWorld", _m_to_km(canon_place.distance_to_country_m) AS "distanceToCountry_km", _m_to_km(canon_place.distance_to_state_m) AS "distanceToStateProvince_km", location.sourceaccessioncode AS "plotName", location.elevation_m AS "elevationInMeters", _m2_to_ha(location.area_m2) AS "plotArea_ha", method.name AS "samplingProtocol", COALESCE(locationevent.obsstartdate, aggregateoccurrence.collectiondate) AS "dateCollected", family_higher_plant_group.higher_plant_group AS "higherPlantGroup", accepted_taxonverbatim.family, accepted_taxonverbatim.genus, ((accepted_taxonverbatim.genus || ' '::text) || accepted_taxonverbatim.specific_epithet) AS "speciesBinomial", COALESCE(accepted_taxonverbatim.taxonomicname, accepted_taxonverbatim.taxonname) AS "scientificName", accepted_taxonverbatim.author AS "scientificNameAuthorship", CASE WHEN (accepted_taxonlabel.rank = 'family'::taxonrank) THEN accepted_taxonverbatim.family ELSE NULLIF(array_to_string(ARRAY[accepted_taxonverbatim.genus, COALESCE(parsed_taxonverbatim.specific_epithet, parsed_taxonverbatim.morphospecies)], ' '::text), ''::text) END AS "scientificNameWithMorphospecies", (threatened_taxonlabel.taxonlabel_id IS NOT NULL) AS threatened, NULLIF(array_to_string(ARRAY[identifiedby.givenname, identifiedby.middlename, identifiedby.surname], ' '::text), ''::text) AS "identifiedBy", taxonoccurrence.growthform AS "growthForm", ((cultivated_family_locations.country IS NOT NULL) OR _or(taxonoccurrence.iscultivated, location.iscultivated, (geoscrub_cultivated."isCultivated")::boolean)) AS cultivated, CASE WHEN (taxonoccurrence.iscultivated IS NOT NULL) THEN taxonoccurrence.cultivatedbasis WHEN (location.iscultivated IS NOT NULL) THEN NULL::text ELSE (geoscrub_cultivated."isCultivatedReason" || ''::text) END AS "cultivatedBasis", _fraction_to_percent(aggregateoccurrence.cover_fraction) AS "coverPercent", _m_to_cm(stemobservation.diameterbreastheight_m) AS "diameterBreastHeight_cm", stemobservation.height_m, stemobservation.tag, stemobservation.xposition_m AS "organismX_m", stemobservation.yposition_m AS "organismY_m", collector.fullname AS "recordedBy", plantobservation.collectionnumber AS "recordNumber" FROM ((((((((((((((((((((((((((source JOIN location USING (source_id)) LEFT JOIN locationplace USING (location_id)) LEFT JOIN place datasource_place USING (place_id)) LEFT JOIN place canon_place ON ((canon_place.place_id = datasource_place.canon_place_id))) LEFT JOIN coordinates ON ((coordinates.coordinates_id = canon_place.coordinates_id))) LEFT JOIN geoscrub.geoscrub_cultivated ON (((geoscrub_cultivated."latitudeDecimalVerbatim" = coordinates.latitude_deg) AND (geoscrub_cultivated."longitudeDecimalVerbatim" = coordinates.longitude_deg)))) LEFT JOIN "newWorld".iso_code_gadm ON ((iso_code_gadm."GADM country" = canon_place.country))) LEFT JOIN "newWorld"."newWorldCountries" ON ((("newWorldCountries"."isoCode")::text = iso_code_gadm."2-digit iso code"))) JOIN locationevent USING (location_id)) LEFT JOIN method USING (method_id)) JOIN taxonoccurrence USING (locationevent_id)) LEFT JOIN party collector ON ((collector.party_id = taxonoccurrence.collector_id))) JOIN taxondetermination USING (taxonoccurrence_id)) LEFT JOIN party identifiedby ON ((identifiedby.party_id = taxondetermination.party_id))) JOIN taxonverbatim datasource_taxonverbatim USING (taxonverbatim_id)) JOIN taxonlabel datasource_taxonlabel USING (taxonlabel_id)) LEFT JOIN taxonlabel parsed_taxonlabel ON ((parsed_taxonlabel.taxonlabel_id = datasource_taxonlabel.matched_label_id))) LEFT JOIN taxonverbatim parsed_taxonverbatim ON ((parsed_taxonverbatim.taxonlabel_id = parsed_taxonlabel.taxonlabel_id))) LEFT JOIN taxonlabel accepted_taxonlabel ON ((accepted_taxonlabel.taxonlabel_id = datasource_taxonlabel.canon_label_id))) LEFT JOIN taxonverbatim accepted_taxonverbatim ON ((accepted_taxonverbatim.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN threatened_taxonlabel ON ((threatened_taxonlabel.taxonlabel_id = accepted_taxonlabel.taxonlabel_id))) LEFT JOIN aggregateoccurrence USING (taxonoccurrence_id)) LEFT JOIN family_higher_plant_group ON ((family_higher_plant_group.family = accepted_taxonverbatim.family))) LEFT JOIN cultivated_family_locations ON (((cultivated_family_locations.family = accepted_taxonverbatim.family) AND (cultivated_family_locations.country = canon_place.country)))) LEFT JOIN plantobservation USING (aggregateoccurrence_id)) LEFT JOIN stemobservation USING (plantobservation_id)) WHERE (taxondetermination.iscurrent AND (COALESCE(locationevent.obsstartdate, aggregateoccurrence.collectiondate) IS NOT NULL));
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Also available in: Unified diff
schemas/vegbien.sql: analytical_stem_view: cultivated: Use OR instead of _or() to combine cultivated_family_locations.country IS NOT NULL with the other values, because this field's false value should not be used in place of NULL if all the other values are NULL, as it would be with _or(). (cultivated_family_locations.country IS NOT NULL can indicate presence, but not absence, of cultivated status.)