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Revision 6557

Added by Aaron Marcuse-Kubitza about 12 years ago

inputs/NVS/StemObservation/map.csv: Mapped Item ID, Item Obs ID

View differences:

inputs/NVS/StemObservation/map.csv
22 22 
Height,height_m,,Height Units is always m
23 23 
Height Units,*Height Units,,
24 24 
Item Obs Note,*Item Obs Note,,
25 
Item Obs ID,*Item Obs ID,,
26 
Item ID,*Item ID,,
25 
Item Obs ID,stemID,,
26 
Item ID,tag,,
27 27 
Parent Plot Obs ID,*Parent Plot Obs ID,,
28 28 
Sample Method ID,*Sample Method ID,,
inputs/NVS/StemObservation/VegBIEN.csv
10 10 
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2",
11 11 
Diameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,Units is always cm
12 12 
Height,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,Height Units is always m
13 
Item Obs ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode,
14 
Item ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag,
13 15 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
16 
Item ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2",
14 17 
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
15 18 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
16 19 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
......
24 27 
Association No,,** No join mapping for *Association No **
25 28 
Height Units,,** No join mapping for *Height Units **
26 29 
Identifier,,** No join mapping for *Identifier **
27 
Item ID,,** No join mapping for *Item ID **
28 
Item Obs ID,,** No join mapping for *Item Obs ID **
29 30 
Item Obs Note,,** No join mapping for *Item Obs Note **
30 31 
LD Units,,** No join mapping for *LD Units **
31 32 
Lean Angle,,** No join mapping for *Lean Angle **
inputs/NVS/StemObservation/test.xml.ref
17 17 
                                        <stemobservation>
18 18 
                                            <diameterbreastheight_m><_cm_to_m><value>$Diameter</value></_cm_to_m></diameterbreastheight_m>
19 19 
                                            <height_m>$Height</height_m>
20 
                                            <sourceaccessioncode>$Item Obs ID</sourceaccessioncode>
21 
                                            <tag>$Item ID</tag>
20 22 
                                        </stemobservation>
21 23 
                                    </plantobservation>
22 24 
                                </aggregateoccurrence>
25 
                                <authortaxoncode>$Item ID</authortaxoncode>
23 26 
                                <growthform>$Taxon Growth Form</growthform>
24 27 
                                <taxondetermination>
25 28 
                                    <taxonverbatim_id>
......
83 86 
        </path>
84 87 
    </_setDefault>
85 88 
</VegBIEN>
86 
Inserted 20 new rows into database
89 
Inserted 24 new rows into database
inputs/NVS/StemObservation/new_terms.csv
2 2 
Plot,locationName,,
3 3 
Taxon Growth Form,growthForm,,
4 4 
Diameter,diameterBreastHeight_cm,,Units is always cm
5 
Item Obs ID,stemID,,
6 
Item ID,tag,,
inputs/NVS/StemObservation/unmapped_terms.csv
14 14 
*Position
15 15 
*Height Units
16 16 
*Item Obs Note
17 
*Item Obs ID
18 
*Item ID
19 17 
*Parent Plot Obs ID
20 18 
*Sample Method ID

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