Revision 6563
Added by Aaron Marcuse-Kubitza about 12 years ago
| inputs/NVS/TaxonOccurrence.Understory/map.csv | ||
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| 1 |
NVS,VegCore,Filter,Comments |
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| 2 |
Project Abbreviation,projectName,, |
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Plot,locationName,, |
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Sub Plot,subplot,, |
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Method Name,*Method Name,, |
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Species Code,*Species Code,, |
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Species Name,specificEpithet,, |
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Verbatim Code,*Verbatim Code,, |
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Taxon Bio Status,*Taxon Bio Status,, |
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Taxon Palatibility,*Taxon Palatibility,, |
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Taxon Growth Form,growthForm,, |
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Tier,*Tier,, |
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Tier Description,*Tier Description,, |
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Tier ID,*Tier ID,, |
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Value,*Value,, |
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| 16 |
Taxon Obs Note,taxonRemarks,, |
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Parent Plot Obs ID,*Parent Plot Obs ID,, |
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| 18 |
Sample Method ID,*Sample Method ID,, |
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| inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv | ||
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| 1 |
NVS,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
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Sub Plot,"/location/_if[@name=""if subplot""]/cond/_exists", |
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Plot,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1", |
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Plot,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode", |
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Sub Plot,/location/authorlocationcode, |
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Project Abbreviation,/location/locationevent/*_id/project/projectname, |
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Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/cond/_exists", |
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Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/cond/_first/2", |
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Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
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Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
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Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
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Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform, |
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Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
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Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
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Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
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| 16 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
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Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
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Sub Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
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Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
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Sub Plot,/location/sourceaccessioncode/_join/2, |
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| 21 |
Method Name,,** No join mapping for *Method Name ** |
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Parent Plot Obs ID,,** No join mapping for *Parent Plot Obs ID ** |
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| 23 |
Sample Method ID,,** No join mapping for *Sample Method ID ** |
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| 24 |
Species Code,,** No join mapping for *Species Code ** |
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| 25 |
Taxon Bio Status,,** No join mapping for *Taxon Bio Status ** |
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| 26 |
Taxon Palatibility,,** No join mapping for *Taxon Palatibility ** |
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| 27 |
Tier,,** No join mapping for *Tier ** |
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| 28 |
Tier Description,,** No join mapping for *Tier Description ** |
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| 29 |
Tier ID,,** No join mapping for *Tier ID ** |
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Value,,** No join mapping for *Value ** |
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| 31 |
Verbatim Code,,** No join mapping for *Verbatim Code ** |
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| inputs/NVS/TaxonOccurrence.Understory/test.xml.ref | ||
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| 1 |
Put template: |
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<VegBIEN> |
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<_setDefault id="-1"> |
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<source_id><source><shortname>NVS</shortname></source></source_id> |
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<path> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<parent_id><location><authorlocationcode>$Plot</authorlocationcode></location></parent_id> |
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<authorlocationcode>$Sub Plot</authorlocationcode> |
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<locationevent> |
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<project_id><project><projectname>$Project Abbreviation</projectname></project></project_id> |
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<taxonoccurrence> |
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<growthform>$Taxon Growth Form</growthform> |
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<taxondetermination> |
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<taxonverbatim_id> |
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<taxonverbatim> |
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<taxonlabel_id> |
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<taxonlabel> |
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<matched_label_id> |
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<taxonlabel> |
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<source_id><source><shortname>TNRS</shortname></source></source_id> |
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<taxonomicname>$Species Name</taxonomicname> |
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</taxonlabel> |
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</matched_label_id> |
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<parent_id> |
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<taxonlabel> |
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<parent_id> |
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<taxonlabel> |
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<rank>cultivar</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>forma</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>variety</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>subspecies</rank> |
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<parent_id> |
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<taxonlabel> |
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<rank>species</rank> |
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<taxonepithet>$Species Name</taxonepithet> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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</taxonlabel> |
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</parent_id> |
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<taxonomicname>$Species Name</taxonomicname> |
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</taxonlabel> |
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</taxonlabel_id> |
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<specific_epithet>$Species Name</specific_epithet> |
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</taxonverbatim> |
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</taxonverbatim_id> |
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<notes>$Taxon Obs Note</notes> |
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</taxondetermination> |
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</taxonoccurrence> |
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</locationevent> |
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<sourceaccessioncode> |
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<_join> |
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<1>$Plot</1> |
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<2>$Sub Plot</2> |
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</_join> |
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</sourceaccessioncode> |
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</location> |
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</path> |
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</_simplifyPath> |
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</path> |
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</_setDefault> |
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</VegBIEN> |
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Inserted 17 new rows into database |
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| inputs/NVS/TaxonOccurrence.Understory/new_terms.csv | ||
|---|---|---|
| 1 |
Project Abbreviation,projectName,, |
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| 2 |
Plot,locationName,, |
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| 3 |
Taxon Growth Form,growthForm,, |
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| 4 |
Taxon Obs Note,taxonRemarks,, |
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| inputs/NVS/TaxonOccurrence.Understory/unmapped_terms.csv | ||
|---|---|---|
| 1 |
*Method Name |
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| 2 |
*Species Code |
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*Verbatim Code |
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*Taxon Bio Status |
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| 5 |
*Taxon Palatibility |
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*Tier |
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*Tier Description |
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| 8 |
*Tier ID |
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*Value |
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| 10 |
*Parent Plot Obs ID |
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| 11 |
*Sample Method ID |
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Also available in: Unified diff
Added inputs/NVS/TaxonOccurrence.Understory/