Revision 6568
Added by Aaron Marcuse-Kubitza about 12 years ago
inputs/NVS/AggregateOccurrence/map.csv | ||
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8 | 8 |
Verbatim Code,*Verbatim Code,, |
9 | 9 |
Taxon Bio Status,*Taxon Bio Status,, |
10 | 10 |
Taxon Palatibility,*Taxon Palatibility,, |
11 |
Taxon Growth Form,growthForm,, |
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11 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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|
12 | 12 |
Tier,*Tier,, |
13 | 13 |
Tier Description,*Tier Description,, |
14 | 14 |
Tier ID,*Tier ID,, |
inputs/NVS/AggregateOccurrence/VegBIEN.csv | ||
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9 | 9 |
Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
10 | 10 |
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
11 | 11 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
12 |
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
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12 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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13 | 13 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
14 | 14 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
15 | 15 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
inputs/NVS/AggregateOccurrence/test.xml.ref | ||
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12 | 12 |
<locationevent> |
13 | 13 |
<project_id><project><projectname>$Project Abbreviation</projectname></project></project_id> |
14 | 14 |
<taxonoccurrence> |
15 |
<growthform>$Taxon Growth Form</growthform> |
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15 |
<growthform> |
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16 |
<_map> |
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17 |
<Graminoid>grass</Graminoid> |
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18 |
<Shrub>shrub</Shrub> |
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19 |
<Tree>tree</Tree> |
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20 |
<Treefern>forb</Treefern> |
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21 |
<value>$Taxon Growth Form</value> |
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22 |
</_map> |
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23 |
</growthform> |
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16 | 24 |
<taxondetermination> |
17 | 25 |
<taxonverbatim_id> |
18 | 26 |
<taxonverbatim> |
inputs/NVS/AggregateOccurrence/new_terms.csv | ||
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1 | 1 |
Project Abbreviation,projectName,, |
2 | 2 |
Plot,locationName,, |
3 |
Taxon Growth Form,growthForm,, |
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3 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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4 | 4 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/TaxonOccurrence.Understory/map.csv | ||
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8 | 8 |
Verbatim Code,*Verbatim Code,, |
9 | 9 |
Taxon Bio Status,*Taxon Bio Status,, |
10 | 10 |
Taxon Palatibility,*Taxon Palatibility,, |
11 |
Taxon Growth Form,growthForm,, |
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11 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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12 | 12 |
Tier,*Tier,, |
13 | 13 |
Tier Description,*Tier Description,, |
14 | 14 |
Tier ID,*Tier ID,, |
inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv | ||
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9 | 9 |
Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
10 | 10 |
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
11 | 11 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
12 |
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
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12 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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13 | 13 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
14 | 14 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
15 | 15 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
inputs/NVS/TaxonOccurrence.Understory/test.xml.ref | ||
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12 | 12 |
<locationevent> |
13 | 13 |
<project_id><project><projectname>$Project Abbreviation</projectname></project></project_id> |
14 | 14 |
<taxonoccurrence> |
15 |
<growthform>$Taxon Growth Form</growthform> |
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15 |
<growthform> |
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16 |
<_map> |
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17 |
<Graminoid>grass</Graminoid> |
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18 |
<Shrub>shrub</Shrub> |
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19 |
<Tree>tree</Tree> |
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20 |
<Treefern>forb</Treefern> |
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21 |
<value>$Taxon Growth Form</value> |
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22 |
</_map> |
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23 |
</growthform> |
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16 | 24 |
<taxondetermination> |
17 | 25 |
<taxonverbatim_id> |
18 | 26 |
<taxonverbatim> |
inputs/NVS/TaxonOccurrence.Understory/new_terms.csv | ||
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1 | 1 |
Project Abbreviation,projectName,, |
2 | 2 |
Plot,locationName,, |
3 |
Taxon Growth Form,growthForm,, |
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3 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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4 | 4 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/TaxonOccurrence/map.csv | ||
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8 | 8 |
Verbatim Code,*Verbatim Code,, |
9 | 9 |
Taxon Bio Status,*Taxon Bio Status,, |
10 | 10 |
Taxon Palatibility,*Taxon Palatibility,, |
11 |
Taxon Growth Form,growthForm,, |
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11 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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12 | 12 |
Herbivore,*Herbivore,, |
13 | 13 |
Severity,*Severity,, |
14 | 14 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/TaxonOccurrence/VegBIEN.csv | ||
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9 | 9 |
Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then", |
10 | 10 |
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2", |
11 | 11 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
12 |
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
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12 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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13 | 13 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
14 | 14 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
15 | 15 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
inputs/NVS/TaxonOccurrence/test.xml.ref | ||
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12 | 12 |
<locationevent> |
13 | 13 |
<project_id><project><projectname>$Project Abbreviation</projectname></project></project_id> |
14 | 14 |
<taxonoccurrence> |
15 |
<growthform>$Taxon Growth Form</growthform> |
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15 |
<growthform> |
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16 |
<_map> |
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17 |
<Graminoid>grass</Graminoid> |
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18 |
<Shrub>shrub</Shrub> |
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19 |
<Tree>tree</Tree> |
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20 |
<Treefern>forb</Treefern> |
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21 |
<value>$Taxon Growth Form</value> |
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22 |
</_map> |
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23 |
</growthform> |
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16 | 24 |
<taxondetermination> |
17 | 25 |
<taxonverbatim_id> |
18 | 26 |
<taxonverbatim> |
inputs/NVS/TaxonOccurrence/new_terms.csv | ||
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1 | 1 |
Project Abbreviation,projectName,, |
2 | 2 |
Plot,locationName,, |
3 |
Taxon Growth Form,growthForm,, |
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3 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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4 | 4 |
Taxon Obs Note,taxonRemarks,, |
inputs/NVS/StemObservation/map.csv | ||
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9 | 9 |
Verbatim Code,*Verbatim Code,, |
10 | 10 |
Taxon Bio Status,*Taxon Bio Status,, |
11 | 11 |
Taxon Palatibility,*Taxon Palatibility,, |
12 |
Taxon Growth Form,growthForm,, |
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12 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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13 | 13 |
Association No,*Association No,, |
14 | 14 |
Association,*Association,, |
15 | 15 |
Alive State,*Alive State,, |
inputs/NVS/StemObservation/VegBIEN.csv | ||
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14 | 14 |
Item ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag, |
15 | 15 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
16 | 16 |
Item ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2", |
17 |
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
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17 |
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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18 | 18 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1", |
19 | 19 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
20 | 20 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
inputs/NVS/StemObservation/test.xml.ref | ||
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23 | 23 |
</plantobservation> |
24 | 24 |
</aggregateoccurrence> |
25 | 25 |
<authortaxoncode>$Item ID</authortaxoncode> |
26 |
<growthform>$Taxon Growth Form</growthform> |
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26 |
<growthform> |
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27 |
<_map> |
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28 |
<Graminoid>grass</Graminoid> |
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29 |
<Shrub>shrub</Shrub> |
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30 |
<Tree>tree</Tree> |
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31 |
<Treefern>forb</Treefern> |
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32 |
<value>$Taxon Growth Form</value> |
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33 |
</_map> |
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34 |
</growthform> |
|
27 | 35 |
<taxondetermination> |
28 | 36 |
<taxonverbatim_id> |
29 | 37 |
<taxonverbatim> |
inputs/NVS/StemObservation/new_terms.csv | ||
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1 | 1 |
Project Abbreviation,projectName,, |
2 | 2 |
Plot,locationName,, |
3 |
Taxon Growth Form,growthForm,, |
|
3 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
|
|
4 | 4 |
Diameter,diameterBreastHeight_cm,,Units is always cm |
5 | 5 |
Item Obs ID,stemID,, |
6 | 6 |
Item ID,tag,, |
inputs/NVS/map.csv | ||
---|---|---|
5 | 5 |
Plot,locationName,, |
6 | 6 |
Project Abbreviation,projectName,, |
7 | 7 |
Slope,slopeAspect,, |
8 |
Taxon Growth Form,growthForm,, |
|
8 |
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
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|
9 | 9 |
Taxon Obs Note,taxonRemarks,, |
Also available in: Unified diff
inputs/NVS/*/map.csv: Mapped Taxon Growth Form values to growthform enum