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Revision 6568

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/NVS/*/map.csv: Mapped Taxon Growth Form values to growthform enum

View differences:

inputs/NVS/AggregateOccurrence/map.csv
8 8 
Verbatim Code,*Verbatim Code,,
9 9 
Taxon Bio Status,*Taxon Bio Status,,
10 10 
Taxon Palatibility,*Taxon Palatibility,,
11 
Taxon Growth Form,growthForm,,
11 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
12 12 
Tier,*Tier,,
13 13 
Tier Description,*Tier Description,,
14 14 
Tier ID,*Tier ID,,
inputs/NVS/AggregateOccurrence/VegBIEN.csv
9 9 
Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",
10 10 
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2",
11 11 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
12 
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
12 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
13 13 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
14 14 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
15 15 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
inputs/NVS/AggregateOccurrence/test.xml.ref
12 12 
                        <locationevent>
13 13 
                            <project_id><project><projectname>$Project Abbreviation</projectname></project></project_id>
14 14 
                            <taxonoccurrence>
15 
                                <growthform>$Taxon Growth Form</growthform>
15 
                                <growthform>
16 
                                    <_map>
17 
                                        <Graminoid>grass</Graminoid>
18 
                                        <Shrub>shrub</Shrub>
19 
                                        <Tree>tree</Tree>
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                                        <Treefern>forb</Treefern>
21 
                                        <value>$Taxon Growth Form</value>
22 
                                    </_map>
23 
                                </growthform>
16 24 
                                <taxondetermination>
17 25 
                                    <taxonverbatim_id>
18 26 
                                        <taxonverbatim>
inputs/NVS/AggregateOccurrence/new_terms.csv
1 1 
Project Abbreviation,projectName,,
2 2 
Plot,locationName,,
3 
Taxon Growth Form,growthForm,,
3 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
4 4 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/TaxonOccurrence.Understory/map.csv
8 8 
Verbatim Code,*Verbatim Code,,
9 9 
Taxon Bio Status,*Taxon Bio Status,,
10 10 
Taxon Palatibility,*Taxon Palatibility,,
11 
Taxon Growth Form,growthForm,,
11 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
12 12 
Tier,*Tier,,
13 13 
Tier Description,*Tier Description,,
14 14 
Tier ID,*Tier ID,,
inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv
9 9 
Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",
10 10 
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2",
11 11 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
12 
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
12 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
13 13 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
14 14 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
15 15 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
inputs/NVS/TaxonOccurrence.Understory/test.xml.ref
12 12 
                        <locationevent>
13 13 
                            <project_id><project><projectname>$Project Abbreviation</projectname></project></project_id>
14 14 
                            <taxonoccurrence>
15 
                                <growthform>$Taxon Growth Form</growthform>
15 
                                <growthform>
16 
                                    <_map>
17 
                                        <Graminoid>grass</Graminoid>
18 
                                        <Shrub>shrub</Shrub>
19 
                                        <Tree>tree</Tree>
20 
                                        <Treefern>forb</Treefern>
21 
                                        <value>$Taxon Growth Form</value>
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                                    </_map>
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                                </growthform>
16 24 
                                <taxondetermination>
17 25 
                                    <taxonverbatim_id>
18 26 
                                        <taxonverbatim>
inputs/NVS/TaxonOccurrence.Understory/new_terms.csv
1 1 
Project Abbreviation,projectName,,
2 2 
Plot,locationName,,
3 
Taxon Growth Form,growthForm,,
3 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
4 4 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/TaxonOccurrence/map.csv
8 8 
Verbatim Code,*Verbatim Code,,
9 9 
Taxon Bio Status,*Taxon Bio Status,,
10 10 
Taxon Palatibility,*Taxon Palatibility,,
11 
Taxon Growth Form,growthForm,,
11 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
12 12 
Herbivore,*Herbivore,,
13 13 
Severity,*Severity,,
14 14 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/TaxonOccurrence/VegBIEN.csv
9 9 
Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",
10 10 
Sub Plot,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2",
11 11 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
12 
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
12 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
13 13 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
14 14 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
15 15 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
inputs/NVS/TaxonOccurrence/test.xml.ref
12 12 
                        <locationevent>
13 13 
                            <project_id><project><projectname>$Project Abbreviation</projectname></project></project_id>
14 14 
                            <taxonoccurrence>
15 
                                <growthform>$Taxon Growth Form</growthform>
15 
                                <growthform>
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                                    <_map>
17 
                                        <Graminoid>grass</Graminoid>
18 
                                        <Shrub>shrub</Shrub>
19 
                                        <Tree>tree</Tree>
20 
                                        <Treefern>forb</Treefern>
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                                        <value>$Taxon Growth Form</value>
22 
                                    </_map>
23 
                                </growthform>
16 24 
                                <taxondetermination>
17 25 
                                    <taxonverbatim_id>
18 26 
                                        <taxonverbatim>
inputs/NVS/TaxonOccurrence/new_terms.csv
1 1 
Project Abbreviation,projectName,,
2 2 
Plot,locationName,,
3 
Taxon Growth Form,growthForm,,
3 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
4 4 
Taxon Obs Note,taxonRemarks,,
inputs/NVS/StemObservation/map.csv
9 9 
Verbatim Code,*Verbatim Code,,
10 10 
Taxon Bio Status,*Taxon Bio Status,,
11 11 
Taxon Palatibility,*Taxon Palatibility,,
12 
Taxon Growth Form,growthForm,,
12 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
13 13 
Association No,*Association No,,
14 14 
Association,*Association,,
15 15 
Alive State,*Alive State,,
inputs/NVS/StemObservation/VegBIEN.csv
14 14 
Item ID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/tag,
15 15 
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
16 16 
Item ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/1/_first/2",
17 
Taxon Growth Form,/location/locationevent/taxonoccurrence/growthform,
17 
Taxon Growth Form,"/location/locationevent/taxonoccurrence/growthform/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
18 18 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
19 19 
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
20 20 
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
inputs/NVS/StemObservation/test.xml.ref
23 23 
                                    </plantobservation>
24 24 
                                </aggregateoccurrence>
25 25 
                                <authortaxoncode>$Item ID</authortaxoncode>
26 
                                <growthform>$Taxon Growth Form</growthform>
26 
                                <growthform>
27 
                                    <_map>
28 
                                        <Graminoid>grass</Graminoid>
29 
                                        <Shrub>shrub</Shrub>
30 
                                        <Tree>tree</Tree>
31 
                                        <Treefern>forb</Treefern>
32 
                                        <value>$Taxon Growth Form</value>
33 
                                    </_map>
34 
                                </growthform>
27 35 
                                <taxondetermination>
28 36 
                                    <taxonverbatim_id>
29 37 
                                        <taxonverbatim>
inputs/NVS/StemObservation/new_terms.csv
1 1 
Project Abbreviation,projectName,,
2 2 
Plot,locationName,,
3 
Taxon Growth Form,growthForm,,
3 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
4 4 
Diameter,diameterBreastHeight_cm,,Units is always cm
5 5 
Item Obs ID,stemID,,
6 6 
Item ID,tag,,
inputs/NVS/map.csv
5 5 
Plot,locationName,,
6 6 
Project Abbreviation,projectName,,
7 7 
Slope,slopeAspect,,
8 
Taxon Growth Form,growthForm,,
8 
Taxon Growth Form,growthForm,"/_map:[Graminoid=grass,Shrub=shrub,Tree=tree,Treefern=forb]/value",
9 9 
Taxon Obs Note,taxonRemarks,,

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