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| Revision:
Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 6667 over 11 years Aaron Marcuse-Kubitza backups/Makefile: Synchronization: Replaced dow...
  bin 6651 over 11 years Aaron Marcuse-Kubitza publish_analytical_db: Require caller to specif...
  config 6321 over 11 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 6665 over 11 years Aaron Marcuse-Kubitza inputs/.geoscrub/geoscrub_output/map.csv: Remov...
  lib 6589 over 11 years Aaron Marcuse-Kubitza csvs.py: stream_info(): Use the Excel dialect a...
  mappings 6654 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.csv: cultivated* source: Added...
  schemas 6669 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: analytical_stem_view: scie...
  to_do 4524 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 over 11 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 12.9 KB 6544 over 11 years Aaron Marcuse-Kubitza root Makefile: apt-get: Use --yes to allow unat...
README.TXT 15.3 KB 6666 over 11 years Aaron Marcuse-Kubitza backups/Makefile: Synchronization: Sync with ju...
map 989 Bytes 5158 over 11 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
6669 12/06/2012 10:34 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: analytical_stem_view: scientificNameWithMorphospecies: Fixed bug where need to use the taxonomicname in accepted_taxonlabel instead of accepted_taxonverbatim, because taxonverbatim only contains fields provided by the data provider (in this case, TNRS), but TNRS does not provide the taxonomic name (taxon name+author), only the taxon name and author components separately

6668 12/06/2012 10:09 PM Aaron Marcuse-Kubitza

schemas/vegbien.sql: coordinates: coordinates_unique: Use md5() on verbatimcoordinates so that it doesn't cause the index row size to be exceeded. This should fix a bug in the HIBG import where long verbatimcoordinates values were causing the error 'OperationalError: index row size 2784 exceeds maximum 2712 for index "coordinates_unique"'.

6667 12/06/2012 09:56 PM Aaron Marcuse-Kubitza

backups/Makefile: Synchronization: Replaced download target, which downloads all backups, with %/download, which downloads just a specific backup, because you would generally only want to extract a single backup from the archive for reinstallation

6666 12/06/2012 09:47 PM Aaron Marcuse-Kubitza

backups/Makefile: Synchronization: Sync with jupiter instead of vegbiendev. This requires running `make backups/upload` on vegbiendev to archive the files, instead of `make backups/download` to download them to your local machine.

6665 12/06/2012 08:58 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/map.csv: Removed no longer accurate comment that county is not yet used by VegBIEN

6664 12/06/2012 08:56 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/map.csv: *validity: Remapped 2 ("Point is <=5km from putative GADM polygon, but still outside it") to true instead of false, because 5km is close enough to the polygon that the mismatch could result from shapefile simplifying, boundary changes, or other factors that don't affect geovalidity

6663 12/06/2012 08:52 PM Aaron Marcuse-Kubitza

inputs/.geoscrub/geoscrub_output/map.csv: *validity: Remapped 0 ("Complete name provided, but couldn't be scrubbed to GADM") to NULL instead of false, because the absence of a name match does not mean the coordinates are invalid

6662 12/06/2012 08:51 PM Aaron Marcuse-Kubitza

inputs/.{NCBI,TNRS}/import_order.txt: Added Source

6661 12/06/2012 08:50 PM Aaron Marcuse-Kubitza

input.Makefile: SVN: add: Add a Source table to store datasource metadata. This adds a Source table to all herbaria which are listed in .herbaria, and therefore didn't previously need a Source table to indicate their referenceType and sampleType.

6660 12/06/2012 08:44 PM Aaron Marcuse-Kubitza

input.Makefile: SVN: add: Add a Source table to store datasource metadata. This adds a Source table to all herbaria which are listed in .herbaria, and therefore didn't previously need a Source table to indicate their referenceType and sampleType.

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