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aaronmk
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#!/usr/bin/env python
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# Maps one datasource to another, using a map spreadsheet if needed
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# For outputting an XML file to a PostgreSQL database, use the general format of
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# http://vegbank.org/vegdocs/xml/vegbank_example_ver1.0.2.xml
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import os
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import os.path
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import sys
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import xml.dom.minidom
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sys.path.append(os.path.dirname(__file__)+"/lib")
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aaronmk
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import opts
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aaronmk
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def main():
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# Get db config from env vars
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db_config_names = ['host', 'user', 'password', 'database']
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env_names = []
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def get_db_config(prefix):
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return opts.get_env_vars(db_config_names, prefix, env_names)
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in_db_config = get_db_config('in')
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out_db_config = get_db_config('out')
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in_is_db = in_db_config != None
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out_is_db = out_db_config != None
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uses_map = in_is_db or not out_is_db
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# Parse args
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try: _prog_name, map_path = sys.argv
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except ValueError:
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if uses_map: raise SystemExit('Usage: '+opts.env_usage(env_names, True)
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+' [commit=1] '+sys.argv[0]+' [map_path] [<input] [>output]')
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commit = opts.env_flag('commit')
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aaronmk
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# Load map header
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in_is_xml = True
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if uses_map:
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import copy
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import csv
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import xpath
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map_stream = open(map_path, 'rb')
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map_reader = csv.reader(map_stream)
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src, dest = map_reader.next()[:2]
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def split_col_name(name):
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name, sep, root = name.partition('/')
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return name, sep != '', sep+root
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src, in_is_xml, src_root = split_col_name(src)
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dest, out_is_xml, dest_root = split_col_name(dest)
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assert out_is_xml
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has_types = dest_root.startswith('/*s/') # outer elements are types
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# Input datasource to XML tree, mapping if needed
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if in_is_xml: doc = xml.dom.minidom.parse(sys.stdin)
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if uses_map:
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from Parser import SyntaxException
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import xml_xpath
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map_ = {}
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for row in map_reader:
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in_, out = row[:2]
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if out != '':
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try: out = xpath.parse(dest_root+out)
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except SyntaxException, ex: raise SystemExit(str(ex))
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if in_is_xml: pass # TODO: process the mapping
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elif in_is_db: pass # TODO: process the mapping
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else: map_[in_] = out
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map_stream.close()
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out_doc = xml.dom.minidom.getDOMImplementation().createDocument(None,
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dest, None)
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if in_is_xml: raise Exception('XML-XML mapping not supported yet')
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else: # input is CSV
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reader = csv.reader(sys.stdin)
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fieldnames = reader.next()
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row_idx = 0
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for row in reader:
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row_id = str(row_idx)
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for idx, name in enumerate(fieldnames):
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value = row[idx]
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if value != '' and name in map_:
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path = copy.deepcopy(map_[name]) # don't modify value!
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xpath.set_id(path, row_id, has_types)
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xpath.set_value(path, value)
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xml_xpath.get(out_doc, path, True)
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row_idx += 1
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doc = out_doc
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# Output XML tree
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if out_db_config != None: # output is database
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import psycopg2
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from psycopg2.extensions import ISOLATION_LEVEL_SERIALIZABLE
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import db_xml
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db = psycopg2.connect(**out_db_config)
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db.set_isolation_level(ISOLATION_LEVEL_SERIALIZABLE)
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try:
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row_ct_ref = [0]
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db_xml.xml2db(db, doc.documentElement, row_ct_ref)
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print 'Inserted '+str(row_ct_ref[0])+' rows'
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if commit: db.commit()
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finally:
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db.rollback()
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db.close()
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else: doc.writexml(sys.stdout, addindent=' ', newl='\n') # output is XML
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main()
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