Revision 6749
Added by Aaron Marcuse-Kubitza almost 12 years ago
inputs/VegBank/stemlocation/new_terms.csv | ||
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stemlocation_id,stemID,, |
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stemlocation_id,individualID,, |
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stemcount_id,aggregateOccurrenceID,, |
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stemcode,authorStemCode,, |
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stemxposition,organismX_m,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemyposition,organismY_m,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
inputs/VegBank/stemlocation/unmapped_terms.csv | ||
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*stemhealth |
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*emb_stemlocation |
inputs/VegBank/stemlocation/header.csv | ||
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stemlocation_id,stemcount_id,stemcode,stemxposition,stemyposition,stemhealth,emb_stemlocation |
inputs/VegBank/stemlocation/map.csv | ||
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VegBank,VegCore,Filter,Comments |
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stemlocation_id,stemID,, |
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stemlocation_id,individualID,, |
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stemcount_id,aggregateOccurrenceID,, |
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stemcode,authorStemCode,, |
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stemxposition,organismX_m,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemyposition,organismY_m,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemhealth,*stemhealth,, |
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emb_stemlocation,*emb_stemlocation,, |
inputs/VegBank/stemlocation/test.xml.ref | ||
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Put template: |
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<VegBIEN> |
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<_setDefault id="-1"> |
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<source_id><source><shortname>VegBank</shortname></source></source_id> |
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<path> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<plantobservation> |
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<sourceaccessioncode>$stemlocation_id</sourceaccessioncode> |
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<stemobservation> |
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<authorstemcode>$stemcode</authorstemcode> |
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<sourceaccessioncode>$stemlocation_id</sourceaccessioncode> |
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<xposition_m>$stemxposition</xposition_m> |
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<yposition_m>$stemyposition</yposition_m> |
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</stemobservation> |
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</plantobservation> |
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<sourceaccessioncode>$stemcount_id</sourceaccessioncode> |
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</aggregateoccurrence> |
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</taxonoccurrence> |
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</locationevent> |
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</location> |
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</path> |
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</_simplifyPath> |
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</path> |
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</_setDefault> |
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</VegBIEN> |
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Inserted 7 new rows into database |
inputs/VegBank/stemlocation/VegBIEN.csv | ||
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VegBank,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
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stemlocation_id,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
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stemlocation_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
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stemcode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode, |
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stemlocation_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode, |
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stemxposition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemyposition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemcount_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode, |
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stemlocation_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
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stemcount_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists", |
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stemlocation_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else", |
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emb_stemlocation,,** No join mapping for *emb_stemlocation ** |
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stemhealth,,** No join mapping for *stemhealth ** |
inputs/VegBank/import_order.txt | ||
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3 | 3 |
observation_ |
4 | 4 |
taxonobservation_ |
5 | 5 |
stemcount_ |
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stemlocation |
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stemlocation_ |
inputs/VegBank/stemlocation_/header.csv | ||
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stemcount_id,taxonimportance_id,stemdiameter,stemdiameteraccuracy,stemheight,stemheightaccuracy,stemcount,stemtaxonarea,emb_stemcount,stemlocation_id,stemcode,stemxposition,stemyposition,stemhealth,emb_stemlocation |
inputs/VegBank/stemlocation_/map.csv | ||
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VegBank,VegCore,Filter,Comments |
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stemcount_id,aggregateOccurrenceID,, |
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taxonimportance_id,OMIT,,Omitted because stemcount_id is more specific |
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stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
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stemdiameteraccuracy,*stemdiameteraccuracy,, |
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stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
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stemheightaccuracy,*stemheightaccuracy,, |
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stemcount,individualCount,, |
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stemtaxonarea,*stemtaxonarea,, |
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emb_stemcount,*emb_stemcount,, |
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stemlocation_id,stemID,, |
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stemlocation_id,individualID,, |
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stemcode,authorStemCode,, |
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stemxposition,organismX_m,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemyposition,organismY_m,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemhealth,*stemhealth,, |
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emb_stemlocation,*emb_stemlocation,, |
inputs/VegBank/stemlocation_/VegBIEN.csv | ||
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VegBank,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments |
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stemlocation_id,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
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stemcount,/location/locationevent/taxonoccurrence/aggregateoccurrence/count, |
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stemlocation_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/sourceaccessioncode, |
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stemcode,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/authorstemcode, |
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stemdiameter,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/diameterbreastheight_m/_cm_to_m/value,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
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stemheight,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/height_m,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
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stemlocation_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/sourceaccessioncode, |
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stemxposition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/xposition_m,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemyposition,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/stemobservation/yposition_m,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemcount_id,/location/locationevent/taxonoccurrence/aggregateoccurrence/sourceaccessioncode, |
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stemlocation_id,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists", |
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stemcount_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/cond/_exists", |
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stemlocation_id,"/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/2/_if[@name=""if organism in AggregateOccurrence""]/else", |
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emb_stemcount,,** No join mapping for *emb_stemcount ** |
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emb_stemlocation,,** No join mapping for *emb_stemlocation ** |
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stemdiameteraccuracy,,** No join mapping for *stemdiameteraccuracy ** |
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stemhealth,,** No join mapping for *stemhealth ** |
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stemheightaccuracy,,** No join mapping for *stemheightaccuracy ** |
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stemtaxonarea,,** No join mapping for *stemtaxonarea ** |
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taxonimportance_id,,** No non-empty join mapping for OMIT ** Omitted because stemcount_id is more specific |
inputs/VegBank/stemlocation_/test.xml.ref | ||
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Put template: |
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<VegBIEN> |
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<_setDefault id="-1"> |
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<source_id><source><shortname>VegBank</shortname></source></source_id> |
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<path> |
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<_simplifyPath> |
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<next>parent_id</next> |
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<path> |
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<location> |
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<locationevent> |
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<taxonoccurrence> |
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<aggregateoccurrence> |
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<count>$stemcount</count> |
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<plantobservation> |
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<sourceaccessioncode>$stemlocation_id</sourceaccessioncode> |
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<stemobservation> |
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<authorstemcode>$stemcode</authorstemcode> |
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<diameterbreastheight_m><_cm_to_m><value>$stemdiameter</value></_cm_to_m></diameterbreastheight_m> |
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<height_m>$stemheight</height_m> |
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<sourceaccessioncode>$stemlocation_id</sourceaccessioncode> |
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<xposition_m>$stemxposition</xposition_m> |
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<yposition_m>$stemyposition</yposition_m> |
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</stemobservation> |
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</plantobservation> |
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<sourceaccessioncode>$stemcount_id</sourceaccessioncode> |
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</aggregateoccurrence> |
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</taxonoccurrence> |
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</locationevent> |
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</location> |
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</path> |
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</_simplifyPath> |
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</path> |
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</_setDefault> |
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</VegBIEN> |
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Inserted 7 new rows into database |
inputs/VegBank/stemlocation_/new_terms.csv | ||
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stemcount_id,aggregateOccurrenceID,, |
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taxonimportance_id,OMIT,,Omitted because stemcount_id is more specific |
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stemdiameter,diameterBreastHeight_cm,,"""The diameter of the stem in centimeters"" (stemDiameter definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
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stemheight,height_m,,"""The measured height of the stem in meters"" (stemHeight definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemcount&entity=dba_tabledescription&where=where_tablename>)" |
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stemlocation_id,stemID,, |
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stemlocation_id,individualID,, |
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stemcode,authorStemCode,, |
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stemxposition,organismX_m,,"""The X-coordinate of the stem position in m"" (stemXPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
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stemyposition,organismY_m,,"""The Y-coordinate of the stem position, as above"" (stemYPosition definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=stemlocation&entity=dba_tabledescription&where=where_tablename>)" |
inputs/VegBank/stemlocation_/unmapped_terms.csv | ||
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*stemdiameteraccuracy |
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*stemheightaccuracy |
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*stemtaxonarea |
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*emb_stemcount |
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*stemhealth |
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*emb_stemlocation |
Also available in: Unified diff
inputs/VegBank/: Joined together stemcount and stemlocation tables to create stemlocation_, in order to include the stem size class's measurements in each tagged stem's stemobservation (in addition to in the stemobservation for the aggregateoccurrence as a whole)