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1 6406 aaronmk
SALVIAS-CSV,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
2 4336 aaronmk
plot_code,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
3
PLOT_ID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
4 5905 aaronmk
PLOT_ID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
5 4324 aaronmk
plot_code,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
6
PLOT_ID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
7 4767 aaronmk
plot_area_ha,/location/area_m2/_ha_to_m2/value,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
8 4809 aaronmk
elev_m,/location/elevation_m/_alt/1,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
9 4820 aaronmk
elev_max_m,/location/elevation_m/_alt/2/_avg/max,
10 4822 aaronmk
elev_min_m,/location/elevation_m/_alt/2/_avg/min,
11 6432 aaronmk
locality_description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
12 3968 aaronmk
plot_methodology,/location/locationevent/*_id/method/name,
13 6773 aaronmk
observation_type,/location/locationevent/*_id/method/observationmeasure,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
14 3968 aaronmk
project,/location/locationevent/*_id/project/projectname,
15 5977 aaronmk
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
16
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
17 6002 aaronmk
plot_code,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
18
PLOT_ID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
19 6217 aaronmk
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsenddate/_alt/1",
20
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/obsstartdate/_alt/1",
21 3968 aaronmk
holdridge_life_zone,/location/locationevent/commclass/commdetermination/*_id/commconcept/*_id/*/commname,
22
life_zone_code,/location/locationevent/commclass/commdetermination/*_id/commconcept/commdescription,
23 6217 aaronmk
date_finish,/location/locationevent/obsenddate/_alt/1,
24
date_start,/location/locationevent/obsstartdate/_alt/1,
25 4753 aaronmk
precip_mm,/location/locationevent/precipitation_m,
26 6482 aaronmk
soil_acidity,"/location/locationevent/soilsample/acidity_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
27
soil_base,/location/locationevent/soilsample/basesaturation_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
28
soil_Ca,/location/locationevent/soilsample/calcium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
29
soil_C,/location/locationevent/soilsample/carbon_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
30
soil_cation_cap,/location/locationevent/soilsample/cationexchangecapacity_cmol_kg,
31
clay_percent,/location/locationevent/soilsample/clay_fraction/_percent_to_fraction/value,
32
soil_conductivity,/location/locationevent/soilsample/conductivity,
33
soil_Mg,/location/locationevent/soilsample/magnesium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
34
soil_N,/location/locationevent/soilsample/nitrogen_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
35
organic_percent,/location/locationevent/soilsample/organic_fraction/_percent_to_fraction/value,
36
pH,/location/locationevent/soilsample/ph,"Brad: For all these soil variables, how do we store information on method, units. Seems like an ontological structure would be more appropriate (measurementName, measurementValue, measurementUnits, measurementMethod). Same as BIEN traits table. Something to discuss."
37
soil_P,"/location/locationevent/soilsample/phosphorus_fraction/_percent_to_fraction/value/_map:[""<0.05""=0,*=*]/value",Assuming units are % based on the range of values
38
soil_K,/location/locationevent/soilsample/potassium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
39
sand_percent,/location/locationevent/soilsample/sand_fraction/_percent_to_fraction/value,
40
silt_percent,/location/locationevent/soilsample/silt_fraction/_percent_to_fraction/value,
41
soil_Na,/location/locationevent/soilsample/sodium_fraction/_percent_to_fraction/value,Assuming units are % based on the range of values
42
soil_texture,/location/locationevent/soilsample/texture,
43 5176 aaronmk
PLOT_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
44
plot_code,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
45 4753 aaronmk
temp_c,/location/locationevent/temperature_c,
46 3983 aaronmk
locality_description,/location/locationnarrative/_merge/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
47 5861 aaronmk
lat_decimal,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
48
long_decimal,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
49 5855 aaronmk
major_geo,/location/locationplace/*_id/place/continent,
50
country,/location/locationplace/*_id/place/country,
51
pol2,/location/locationplace/*_id/place/county,Brad: No pol2=countyParish
52 6179 aaronmk
lat_decimal,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
53
long_decimal,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
54
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
55 6294 aaronmk
pol2,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,Brad: No pol2=countyParish
56 6179 aaronmk
pol1,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,Brad: No; pol1=stateProvince
57 5855 aaronmk
pol1,/location/locationplace/*_id/place/stateprovince,Brad: No; pol1=stateProvince
58 4753 aaronmk
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value,
59 4786 aaronmk
slope_gradient,/location/slopegradient_fraction/_alt/1,
60 5773 aaronmk
PLOT_ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
61
plot_code,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
62 4979 aaronmk
recensused,,"** No join mapping for *recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"