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Revision 6773

Added by Aaron Marcuse-Kubitza about 12 years ago

inputs/SALVIAS-CSV/Plot/map.csv: Mapped observation_type

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inputs/SALVIAS-CSV/Plot/map.csv
35 35 
soil_texture,texture,,
36 36 
holdridge_life_zone,communityID,,
37 37 
life_zone_code,communityName,,
38 
observation_type,*observation_type,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
38 
observation_type,observationMeasure,,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
39 39 
plot_methodology,samplingProtocol,,
40 40 
plot_area_ha,plotArea_ha,,"Brad: Area in hectares. Is there any way to store units?; Aaron: VegX plot area annotation says ""Total area of the plot in square meters."" so units are fixed"
41 41 
recensused,*recensused,,"Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
inputs/SALVIAS-CSV/Plot/VegBIEN.csv
10 10 
elev_min_m,/location/elevation_m/_alt/2/_avg/min,
11 11 
locality_description,/location/iscultivated/_or/2/_locationnarrative_is_cultivated/locationnarrative/_join/1,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
12 12 
plot_methodology,/location/locationevent/*_id/method/name,
13 
observation_type,/location/locationevent/*_id/method/observationmeasure,"Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
13 14 
project,/location/locationevent/*_id/project/projectname,
14 15 
date_finish,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
15 16 
date_start,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/cond/_exists",
......
58 59 
slope_gradient,/location/slopegradient_fraction/_alt/1,
59 60 
PLOT_ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
60 61 
plot_code,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
61 
observation_type,,"** No join mapping for *observation_type ** Brad: SALVIAS internal metadata indicating whether the record represents an individual or aggregate observation. Rather than storing, use to decide where to store in VegX.; Aaron: VegX aggregateOrganismObservation table is missing many fields available in individualOrganismObservation, so we're mapping to individualOrganismObservation regardless of observation type"
62 62 
recensused,,"** No join mapping for *recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a  plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values"
inputs/SALVIAS-CSV/Plot/test.xml.ref
23 23 
                        </elevation_m>
24 24 
                        <iscultivated><_locationnarrative_is_cultivated><locationnarrative>$locality_description</locationnarrative></_locationnarrative_is_cultivated></iscultivated>
25 25 
                        <locationevent>
26 
                            <method_id><method><name>$plot_methodology</name></method></method_id>
26 
                            <method_id>
27 
                                <method>
28 
                                    <name>$plot_methodology</name>
29 
                                    <observationmeasure>$observation_type</observationmeasure>
30 
                                </method>
31 
                            </method_id>
27 32 
                            <project_id><project><projectname>$project</projectname></project></project_id>
28 33 
                            <commclass>
29 34 
                                <commdetermination>
inputs/SALVIAS-CSV/Plot/unmapped_terms.csv
1 
*observation_type
2 1 
*recensused

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