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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 6725 over 11 years Aaron Marcuse-Kubitza Added backups/fix_perms
  bin 6785 over 11 years Aaron Marcuse-Kubitza my2pg: Translate blob to bytea
  config 6321 over 11 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 6816 over 11 years Aaron Marcuse-Kubitza inputs/CVS/cvs.~.utils.sql: plantconcept_plantn...
  lib 6801 over 11 years Aaron Marcuse-Kubitza sql_io.py: put_table(): is_function: Fixed bug ...
  mappings 6812 over 11 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Removed no longer used ve...
  schemas 6794 over 11 years Aaron Marcuse-Kubitza schemas/vegbien.sql: sourcename: Added sourcena...
  to_do 4524 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 over 11 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 12.9 KB 6544 over 11 years Aaron Marcuse-Kubitza root Makefile: apt-get: Use --yes to allow unat...
README.TXT 15.9 KB 6804 over 11 years Aaron Marcuse-Kubitza README.TXT: Data import: Creating enough disk s...
map 989 Bytes 5158 over 11 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
6816 12/12/2012 08:47 PM Aaron Marcuse-Kubitza

inputs/CVS/cvs.~.utils.sql: plantconcept_plantnames(): Use CVS's taxonLevel values, which are different from the VegBank plantLevel values that the original version of this function used

6815 12/12/2012 08:25 PM Aaron Marcuse-Kubitza

inputs/CVS/cvs.~.utils.sql: plantconcept_*(): Use plantConcept.lowestParentConcept_ID,taxonLevel instead of plantStatus.plantParent_ID,plantLevel to find the plantConcept's ancestors, because CVS does not use plantStatus except in very few cases and instead puts the parent link directly in plantConcept

6814 12/12/2012 08:09 PM Aaron Marcuse-Kubitza

inputs/VegBank/vegbank.~.utils.sql: plantconcept_plantnames(): Made function STABLE instead of VOLATILE because it does not modify any tables

6813 12/12/2012 08:08 PM Aaron Marcuse-Kubitza

inputs/CVS/cvs.~.utils.sql: plantconcept_plantnames(): Made function STABLE instead of VOLATILE because it does not modify any tables

6812 12/12/2012 06:57 PM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Removed no longer used verbatimGrowthForm. Use growthForm instead.

6811 12/12/2012 06:56 PM Aaron Marcuse-Kubitza

mappings/VegCore-VegBIEN.csv: Removed no longer used verbatimGrowthForm. Map to growthForm instead and translate growth form values to VegBIEN's growthform enum.

6810 12/12/2012 06:54 PM Aaron Marcuse-Kubitza

inputs/Madidi/Organism/map.csv: Habit: Mapped growth form values

6809 12/12/2012 06:39 PM Aaron Marcuse-Kubitza

inputs/Madidi/Organism/map.csv: Remapped Habit from verbatimGrowthForm to growthForm, which points to the same place

6808 12/12/2012 06:27 PM Aaron Marcuse-Kubitza

inputs/CVS/taxonObservation_/map.csv: Use denorm_* denormalized taxonomic ranks in place of the normalized ranks when both are provided

6807 12/12/2012 06:25 PM Aaron Marcuse-Kubitza

input.Makefile: Maps validation: %/new_terms.csv: Fixed bug where need to filter unmapped_terms.csv's terms out of the output column, not the input column, because that's what the unmapped terms are generated from. Usually these columns are the same for unmapped terms, but sometimes an output term is changed from the original column's name but still doesn't match a VegCore term in mappings/VegCore-VegBIEN.csv.

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