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Name Size Revision Age Author Comment
  _archive 1598 almost 13 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 over 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 6818 about 12 years Aaron Marcuse-Kubitza backups/fix_perms: Removed world read permissio...
  bin 6833 about 12 years Aaron Marcuse-Kubitza dict2redmine: Hyperlink each term to its anchor...
  config 6321 about 12 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 6834 about 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Terms: Removed namespace ...
  lib 6825 about 12 years Aaron Marcuse-Kubitza lib/phpPgAdmin.login.php.diff: public_ user's p...
  mappings 6834 about 12 years Aaron Marcuse-Kubitza mappings/VegCore.csv: Terms: Removed namespace ...
  schemas 6822 about 12 years Aaron Marcuse-Kubitza Makefile mk_db, schemas/pg_hba*.conf: Added pas...
  to_do 4524 over 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 about 12 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 13.3 KB 6824 about 12 years Aaron Marcuse-Kubitza root Makefile: PostgreSQL: phpPgAdmin: Edit con...
README.TXT 16 KB 6821 about 12 years Aaron Marcuse-Kubitza README.TXT: Maintenance: system updates that af...
map 989 Bytes 5158 about 12 years Aaron Marcuse-Kubitza root map: Removed no longer needed public schem...
new_terms.csv 30.4 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 over 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
6834 12/14/2012 03:18 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Terms: Removed namespace prefixes (dcterms:), because VegCore terms are globally unique within VegCore and there should not be multiple versions of the same VegCore term with different namespaces. Provenance is instead indicated in the Sources column, which contains not just a namespace but a full URL to each source term.

6833 12/14/2012 03:00 AM Aaron Marcuse-Kubitza

dict2redmine: Hyperlink each term to its anchor in the data dictionary, rather than to its first source, which is not necessarily the definitive definition of the term. This also allows clicking the term to get its permalink in the address bar, rather than having to click the small, light gray paragraph mark next to the term name that Redmine provides.

6832 12/14/2012 02:57 AM Aaron Marcuse-Kubitza

dict2redmine: redmine_add_links(): Fixed bug where need to avoid matching internal links ( ... ) as citations ( [...] )

6831 12/14/2012 02:46 AM Aaron Marcuse-Kubitza

mappings/VegCore.csv: Term names: Changed special characters to _ because Redmine doesn't support special characters in HTML anchors (it removes everything except letters, numbers, _, and -)

6830 12/14/2012 02:42 AM Aaron Marcuse-Kubitza

mappings/Makefile: .Veg+-VegCore.csv.last_cleanup: Also canon the output (VegCore) column to the VegCore.csv vocabulary. ? prefixes are not a problem because there are always at least two alternatives listed for these terms, so canon will not modify the output field.

6829 12/14/2012 01:49 AM Aaron Marcuse-Kubitza

psql_script_vegbien: Run psql_vegbien with `nice -n +5` to prevent CPU-intensive operations from slowing down the shell/UI

6828 12/14/2012 01:46 AM Aaron Marcuse-Kubitza

inputs/import.stats.xls: Updated import times

6827 12/14/2012 01:37 AM Aaron Marcuse-Kubitza

Regenerated inputs/CVS/taxonObservation_/new_terms.csv. Note that it includes mappings to terms which are not in mappings/VegCore-VegBIEN.csv, which are prefixed with *.

6826 12/14/2012 01:34 AM Aaron Marcuse-Kubitza

input.Makefile: Maps validation: %/new_terms.csv: Undid incorrect change of column to filter terms out of. This actually needs to be the input column, even though unmapped_terms.csv is generated from the output column, because it's possible to have a mapping to a term which is not in mappings/VegCore-VegBIEN.csv, and such a term would show up in unmapped_terms.csv but should not be filtered out of new_terms.csv.

6825 12/14/2012 01:17 AM Aaron Marcuse-Kubitza

lib/phpPgAdmin.login.php.diff: public_ user's password message: Print as its own message instead of appending it to $msg. Print it before any error message so it always appears at the top of the page.

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