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Revision 6891

Added by Aaron Marcuse-Kubitza over 11 years ago

inputs/CTFS/TaxonOccurrence/map.csv: Mapped SpeciesAuthority

View differences:

inputs/CTFS/TaxonOccurrence/map.csv
17 17 
SpeciesReferenceID,*SpeciesReferenceID,,
18 18 
SpeciesName,specificEpithet,,
19 19 
SpeciesMnemonic,*SpeciesMnemonic,,
20 
SpeciesAuthority,*SpeciesAuthority,,
20 
SpeciesAuthority,scientificNameAuthorship,,
21 21 
IDLevel,*IDLevel,,
22 22 
FieldFamily,*FieldFamily,,
23 23 
Description,*Description,,
inputs/CTFS/TaxonOccurrence/VegBIEN.csv
15 15 
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2",
16 16 
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1",
17 17 
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/4",
18 
SpeciesAuthority,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/_if[@name=""if has verbatim name""]/else/matched_label_id/taxonlabel:[source_id/source/shortname=TNRS]/taxonomicname/_join_words/2/_alt/2/_join_words/2",
18 19 
SubSpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=subspecies]/taxonepithet",
19 20 
SpeciesName,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
20 21 
Genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
......
25 26 
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/2,
26 27 
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
27 28 
SubSpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/4,
29 
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/2,
30 
SpeciesAuthority,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
28 31 
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
29 32 
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
30 33 
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
......
38 41 
IDLevel,,** No join mapping for *IDLevel **
39 42 
InfraSpecificLevel,,** No non-empty join mapping for UNUSED **
40 43 
ReferenceID,,** No join mapping for *ReferenceID **
41 
SpeciesAuthority,,** No join mapping for *SpeciesAuthority **
42 44 
SpeciesCurrentTaxonFlag,,** No join mapping for *SpeciesCurrentTaxonFlag **
43 45 
SpeciesID,,** No join mapping for *SpeciesID **
44 46 
SpeciesMnemonic,,** No join mapping for *SpeciesMnemonic **
inputs/CTFS/TaxonOccurrence/test.xml.ref
25 25 
                                                                    <1><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></1>
26 26 
                                                                    <2>
27 27 
                                                                        <_join_words>
28 
                                                                            <2>$Genus</2>
29 
                                                                            <3>$SpeciesName</3>
30 
                                                                            <4>$SubSpeciesName</4>
28 
                                                                            <1>
29 
                                                                                <_join_words>
30 
                                                                                    <2>$Genus</2>
31 
                                                                                    <3>$SpeciesName</3>
32 
                                                                                    <4>$SubSpeciesName</4>
33 
                                                                                </_join_words>
34 
                                                                            </1>
35 
                                                                            <2>$SpeciesAuthority</2>
31 36 
                                                                        </_join_words>
32 37 
                                                                    </2>
33 38 
                                                                </_join_words>
......
82 87 
                                                            <1><_taxon_family_require_std><family>$Family</family></_taxon_family_require_std></1>
83 88 
                                                            <2>
84 89 
                                                                <_join_words>
85 
                                                                    <2>$Genus</2>
86 
                                                                    <3>$SpeciesName</3>
87 
                                                                    <4>$SubSpeciesName</4>
90 
                                                                    <1>
91 
                                                                        <_join_words>
92 
                                                                            <2>$Genus</2>
93 
                                                                            <3>$SpeciesName</3>
94 
                                                                            <4>$SubSpeciesName</4>
95 
                                                                        </_join_words>
96 
                                                                    </1>
97 
                                                                    <2>$SpeciesAuthority</2>
88 98 
                                                                </_join_words>
89 99 
                                                            </2>
90 100 
                                                        </_join_words>
91 101 
                                                    </taxonomicname>
92 102 
                                                </taxonlabel>
93 103 
                                            </taxonlabel_id>
104 
                                            <author>$SpeciesAuthority</author>
94 105 
                                            <family>$Family</family>
95 106 
                                            <genus>$Genus</genus>
96 107 
                                            <specific_epithet>$SpeciesName</specific_epithet>
inputs/CTFS/TaxonOccurrence/new_terms.csv
1 1 
InfraSpecificLevel,UNUSED,,
2 
SpeciesAuthority,scientificNameAuthorship,,
inputs/CTFS/TaxonOccurrence/unmapped_terms.csv
10 10 
*SpeciesObsoleteTaxonFlag
11 11 
*SpeciesReferenceID
12 12 
*SpeciesMnemonic
13 
*SpeciesAuthority
14 13 
*IDLevel
15 14 
*FieldFamily
16 15 
*Description

Also available in: Unified diff