#!/bin/bash

# Imports all inputs at once

import_all_main ()

{

    local self="${BASH_SOURCE[0]}"

    local selfDir="$(dirname -- "$self")"

    cd "$selfDir/.."

    if test "${BASH_LINENO[1]}" = 0; then # was run without initial "."

        echo "Usage: . $self [vars...] (note initial \".\")"|fold -s >&2

        return 2

    fi

    make inputs/.TNRS/tnrs_accepted/reinstall

    make inputs/.TNRS/tnrs_other/reinstall

    all=1; . "$selfDir/with_all" Source/import by_col=1 "$@"

        # note that this isn't affected by $import_source

    wait # wait for asynchronous commands

    unset all

    export import_source= # Source tables have already been imported

    make inputs/.herbaria/import "$@" &

    sleep 5 # wait for make commands to scroll by

    make inputs/.geoscrub/import "$@" &

    sleep 5 # wait for make commands to scroll by

    make inputs/.NCBI/import by_col=1 "$@"

    # Must come after NCBI for cross links to be made

    make inputs/.TNRS/import "$@"

    wait # wait for asynchronous commands

    make inputs/.TNRS/tnrs/tnrs-remake wait=1 "$@" &

    . "$selfDir/with_all" import "$@"

    after_import ()

    {

        bin/make_analytical_db

    }

    jobs="$(jobs -p)"

    (bin/waitpid $jobs; after_import) &

    unset import_source

}

import_all_main "$@"