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#!/bin/bash
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# Imports all inputs at once
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import_all_main ()
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{
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    local self="${BASH_SOURCE[0]}"
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    local selfDir="$(dirname -- "$self")"
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    cd "$selfDir/.."
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    if test "${BASH_LINENO[1]}" = 0; then # was run without initial "."
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        echo "Usage: [version=...;] . $self [vars...] (note initial \".\")"\
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        |fold -s >&2
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        return 2
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    fi
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    : ${version=$(make -s version)}
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    export version
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    make inputs/.TNRS/tnrs_accepted/reinstall
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    make inputs/.TNRS/tnrs_other/reinstall
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    make schemas/$version/install
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    all=1; . "$selfDir/with_all" Source/import by_col=1 "$@"
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        # note that this isn't affected by $import_source
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    wait # wait for asynchronous commands
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    unset all
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    export import_source= # Source tables have already been imported
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    make inputs/.herbaria/import "$@" &
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    sleep 5 # wait for make commands to scroll by
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    make inputs/.geoscrub/import "$@" &
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    sleep 5 # wait for make commands to scroll by
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    make inputs/.NCBI/import by_col=1 "$@"
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    # Must come after NCBI for cross links to be made
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    make inputs/.TNRS/import "$@"
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    wait # wait for asynchronous commands
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    make inputs/.TNRS/tnrs/tnrs-remake wait=1 "$@" &
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    . "$selfDir/with_all" import "$@"
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    after_import ()
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    {
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        bin/make_analytical_db
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        bin/export_analytical_db &
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        make backups/TNRS.backup-remake &
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        wait # wait for asynchronous commands
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    }
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    jobs="$(jobs -p)"
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    (bin/waitpid $jobs; after_import) &
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    unset import_source
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}
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import_all_main "$@"
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