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Name Size Revision Age Author Comment
  _archive 1598 over 12 years Aaron Marcuse-Kubitza Moved _archive/tapir2flatClient/trunk/client/ t...
  analysis 3076 about 12 years Aaron Marcuse-Kubitza Added top-level analysis dir for range modeling
  backups 6965 over 11 years Aaron Marcuse-Kubitza backups/Makefile: Factored $(isMac) out into li...
  bin 6981 over 11 years Aaron Marcuse-Kubitza make_analytical_db: Automatically call export_a...
  config 6321 over 11 years Aaron Marcuse-Kubitza Added config/bien_read_password
  inputs 6985 over 11 years Aaron Marcuse-Kubitza input.Makefile: Editing import: Removed rotate ...
  lib 6978 over 11 years Aaron Marcuse-Kubitza lib/common.Makefile: $(confirm): Added comment ...
  mappings 6893 over 11 years Aaron Marcuse-Kubitza mappings/Makefile: VegCore.csv: Filter out the ...
  schemas 6986 over 11 years Aaron Marcuse-Kubitza schemas/Makefile: %/publish: Fixed bug where co...
  to_do 4524 almost 12 years Aaron Marcuse-Kubitza to_do/timeline.doc: Updated to reflect addition...
  validation 5971 over 11 years Aaron Marcuse-Kubitza Updated validation/BIEN2_Analytical_DB_overview...
Makefile 11.4 KB 6916 over 11 years Aaron Marcuse-Kubitza Moved schemas-related commands from root Makefi...
README.TXT 16.1 KB 6977 over 11 years Aaron Marcuse-Kubitza import_all: after_import(): Added `make backups...
map 1001 Bytes 6949 over 11 years Aaron Marcuse-Kubitza vegbien_dest: Changed default $prefix to "", so...
new_terms.csv 30.4 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv
unmapped_terms.csv 5.8 KB 4887 almost 12 years Aaron Marcuse-Kubitza Regenerated root unmapped_terms.csv, new_terms.csv

Latest revisions

# Date Author Comment
6986 12/20/2012 12:13 PM Aaron Marcuse-Kubitza

schemas/Makefile: %/publish: Fixed bug where commands were not being run transactionally, because --single-transaction requires `--file -` to work properly
6985 12/20/2012 11:36 AM Aaron Marcuse-Kubitza

input.Makefile: Editing import: Removed rotate because appending the current svn revision doesn't make sense, since this is not related to the revision used to import the datasource
6984 12/20/2012 11:34 AM Aaron Marcuse-Kubitza

input.Makefile: Editing import: Added rename/% and use it in rotate
6983 12/20/2012 11:21 AM Aaron Marcuse-Kubitza

inputs/import.stats.xls: Updated import times
6982 12/20/2012 11:21 AM Aaron Marcuse-Kubitza

schemas/Makefile: Use $* instead of $(@D) for clarity. $(@D) is only needed when the dir part of the target includes a prefix in addition to the % stem.
6981 12/20/2012 10:45 AM Aaron Marcuse-Kubitza

make_analytical_db: Automatically call export_analytical_db when finished
6980 12/20/2012 10:35 AM Aaron Marcuse-Kubitza

schemas/vegbien.sql: make_family_higher_plant_group(): Added `taxonepithet IS NOT NULL` filter, to allow make_analytical_db to proceed even when the NCBI import fails (leaving some nodes with rank = 'family' but no associated taxonepithet). The most recent NCBI import failed due to the search_path/DuplicateException bug resulting from the import schema and public being in the search_path together.
6979 12/20/2012 10:14 AM Aaron Marcuse-Kubitza

schemas/Makefile: Fixed bug where need `SHELL := /bin/bash` for \$(confirmRmPublicSchema) to work correctly
6978 12/20/2012 10:12 AM Aaron Marcuse-Kubitza

lib/common.Makefile: $(confirm): Added comment that this requires `SHELL := /bin/bash` to work correctly
6977 12/20/2012 10:09 AM Aaron Marcuse-Kubitza

import_all: after_import(): Added `make backups/vegbien.$version.backup/test`

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