Revision 7009
Added by Aaron Marcuse-Kubitza almost 12 years ago
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 401 | 401 |
maxSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/max, |
| 402 | 402 |
minSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/min, |
| 403 | 403 |
subplotID,/location/sourceaccessioncode, |
| 404 |
subplot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",
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|
| 405 |
locationID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
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|
| 406 |
locationName,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
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|
| 407 |
subplot,/location/sourceaccessioncode/_join/2,
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|
| 404 |
locationID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
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|
| 405 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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|
| 406 |
locationID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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|
| 407 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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|
| 408 | 408 |
subplotX,/location/sublocationxposition_m, |
| 409 | 409 |
subplotY,/location/sublocationyposition_m, |
| 410 | 410 |
verbatimElevation,/location/verbatimelevation, |
| inputs/NVS/TaxonOccurrence.Understory/test.xml.ref | ||
|---|---|---|
| 78 | 78 |
</taxondetermination> |
| 79 | 79 |
</taxonoccurrence> |
| 80 | 80 |
</locationevent> |
| 81 |
<sourceaccessioncode> |
|
| 82 |
<_join> |
|
| 83 |
<1>$Plot</1> |
|
| 84 |
<2>$Sub Plot</2> |
|
| 85 |
</_join> |
|
| 86 |
</sourceaccessioncode> |
|
| 87 | 81 |
</location> |
| 88 | 82 |
</path> |
| 89 | 83 |
</_simplifyPath> |
| inputs/NVS/TaxonOccurrence/test.xml.ref | ||
|---|---|---|
| 78 | 78 |
</taxondetermination> |
| 79 | 79 |
</taxonoccurrence> |
| 80 | 80 |
</locationevent> |
| 81 |
<sourceaccessioncode> |
|
| 82 |
<_join> |
|
| 83 |
<1>$Plot</1> |
|
| 84 |
<2>$Sub Plot</2> |
|
| 85 |
</_join> |
|
| 86 |
</sourceaccessioncode> |
|
| 87 | 81 |
</location> |
| 88 | 82 |
</path> |
| 89 | 83 |
</_simplifyPath> |
| 90 | 84 |
</path> |
| 91 | 85 |
</_setDefault> |
| 92 | 86 |
</VegBIEN> |
| 93 |
Inserted 18 new rows into database |
|
| 87 |
Inserted 17 new rows into database |
|
| inputs/NVS/StemObservation/test.xml.ref | ||
|---|---|---|
| 83 | 83 |
</taxondetermination> |
| 84 | 84 |
</taxonoccurrence> |
| 85 | 85 |
</locationevent> |
| 86 |
<sourceaccessioncode> |
|
| 87 |
<_join> |
|
| 88 |
<1>$Plot</1> |
|
| 89 |
<2>$Sub Plot</2> |
|
| 90 |
</_join> |
|
| 91 |
</sourceaccessioncode> |
|
| 92 | 86 |
</location> |
| 93 | 87 |
</path> |
| 94 | 88 |
</_simplifyPath> |
| inputs/NVS/Plot/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
Plot,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 18 | 18 |
Plot ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 19 | 19 |
Slope,/location/slopeaspect_deg/_alt/1/_compass/value, |
| 20 |
Sub Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",
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|
| 21 |
Plot ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
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| 22 |
Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
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| 23 |
Sub Plot,/location/sourceaccessioncode/_join/2,
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| 20 |
Plot ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
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| 21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
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| 22 |
Plot ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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| 23 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
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|
| 24 | 24 |
Altitude Units,,** No join mapping for *Altitude Units ** |
| 25 | 25 |
Area Units,,** No join mapping for *Area Units ** |
| 26 | 26 |
Aspect,,** No join mapping for *Aspect ** |
| inputs/VegBank/plot_/VegBIEN.csv | ||
|---|---|---|
| 39 | 39 |
slopegradient,/location/slopegradient_fraction/_alt/1, |
| 40 | 40 |
maxslopegradient,/location/slopegradient_fraction/_alt/2/_avg/max, |
| 41 | 41 |
minslopegradient,/location/slopegradient_fraction/_alt/2/_avg/min, |
| 42 |
plot_id,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
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|
| 43 |
authorplotcode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
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|
| 42 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
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| 43 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
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| 44 | 44 |
Geographic Name,,** No join mapping for *Geographic Name ** |
| 45 | 45 |
accessioncode,,** No join mapping for *accessioncode ** |
| 46 | 46 |
authordatum,,** No join mapping for *authordatum ** |
| inputs/TEAM/VL/VegBIEN.csv | ||
|---|---|---|
| 46 | 46 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
| 47 | 47 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 48 | 48 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 49 |
Subplot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
|
| 50 |
1ha Plot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 51 |
Subplot Number,/location/sourceaccessioncode/_join/2, |
|
| 49 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
| 50 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
| 52 | 51 |
Comments,,** No join mapping for *Comments ** |
| 53 | 52 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| 54 | 53 |
Data Level,,** No join mapping for *Data Level ** |
| inputs/TEAM/VL/test.xml.ref | ||
|---|---|---|
| 176 | 176 |
</place> |
| 177 | 177 |
</place_id> |
| 178 | 178 |
</locationplace> |
| 179 |
<sourceaccessioncode> |
|
| 180 |
<_join> |
|
| 181 |
<1>$1ha Plot Number</1> |
|
| 182 |
<2>$Subplot Number</2> |
|
| 183 |
</_join> |
|
| 184 |
</sourceaccessioncode> |
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| 185 | 179 |
</location> |
| 186 | 180 |
</path> |
| 187 | 181 |
</_simplifyPath> |
| inputs/TEAM/VT/VegBIEN.csv | ||
|---|---|---|
| 46 | 46 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
| 47 | 47 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 48 | 48 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 49 |
Subplot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
|
| 50 |
1ha Plot Number,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 51 |
Subplot Number,/location/sourceaccessioncode/_join/2, |
|
| 49 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
| 50 |
Subplot Number,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
| 52 | 51 |
Comments,,** No join mapping for *Comments ** |
| 53 | 52 |
Condition Codes,,** No join mapping for *Condition Codes ** |
| 54 | 53 |
Data Level,,** No join mapping for *Data Level ** |
| inputs/TEAM/VT/test.xml.ref | ||
|---|---|---|
| 176 | 176 |
</place> |
| 177 | 177 |
</place_id> |
| 178 | 178 |
</locationplace> |
| 179 |
<sourceaccessioncode> |
|
| 180 |
<_join> |
|
| 181 |
<1>$1ha Plot Number</1> |
|
| 182 |
<2>$Subplot Number</2> |
|
| 183 |
</_join> |
|
| 184 |
</sourceaccessioncode> |
|
| 185 | 179 |
</location> |
| 186 | 180 |
</path> |
| 187 | 181 |
</_simplifyPath> |
| inputs/TEAM/TEAM_Sites/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
Longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value", |
| 14 | 14 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 15 | 15 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 16 |
Name,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 17 | 16 |
1ha Plot Coordinate,,** No join mapping for *1ha Plot Coordinate ** |
| inputs/CTFS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 46 | 46 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 47 | 47 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 48 | 48 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 49 |
QuadratID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",Not globally unique; unique only within Site |
|
| 50 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 51 |
QuadratID,/location/sourceaccessioncode/_join/2,Not globally unique; unique only within Site |
|
| 49 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 50 |
QuadratID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",Not globally unique; unique only within Site |
|
| 51 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 52 |
QuadratID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",Not globally unique; unique only within Site |
|
| 52 | 53 |
Description,,** No join mapping for *Description ** |
| 53 | 54 |
ExactDate,,** No join mapping for *ExactDate ** |
| 54 | 55 |
FamilyID,,** No join mapping for *FamilyID ** |
| inputs/CTFS/Subplot/VegBIEN.csv | ||
|---|---|---|
| 9 | 9 |
QuadratID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_first/2",Not globally unique; unique only within Site |
| 10 | 10 |
PlotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 11 | 11 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 12 |
QuadratID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",Not globally unique; unique only within Site |
|
| 13 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 14 |
QuadratID,/location/sourceaccessioncode/_join/2,Not globally unique; unique only within Site |
|
| 12 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 13 |
QuadratID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",Not globally unique; unique only within Site |
|
| 14 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 15 |
QuadratID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",Not globally unique; unique only within Site |
|
| 15 | 16 |
StartX,/location/sublocationxposition_m, |
| 16 | 17 |
StartY,/location/sublocationyposition_m, |
| 17 | 18 |
DimX,,** No join mapping for *DimX ** |
| inputs/CTFS/PlotObservation/VegBIEN.csv | ||
|---|---|---|
| 19 | 19 |
CensusID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 20 | 20 |
PlotCensusNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 21 | 21 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 22 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 22 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 23 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 23 | 24 |
Description,,** No join mapping for *Description ** |
| inputs/CTFS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 31 | 31 |
Family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family, |
| 32 | 32 |
Genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus, |
| 33 | 33 |
SpeciesName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 34 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 34 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 35 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 35 | 36 |
Description,,** No join mapping for *Description ** |
| 36 | 37 |
FamilyID,,** No join mapping for *FamilyID ** |
| 37 | 38 |
FieldFamily,,** No join mapping for *FieldFamily ** |
| inputs/CTFS/SubplotObservation/VegBIEN.csv | ||
|---|---|---|
| 13 | 13 |
CensusID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/sourceaccessioncode", |
| 14 | 14 |
CensusID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 15 | 15 |
PlotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 16 |
QuadratID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",Not globally unique; unique only within Site |
|
| 17 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 18 |
QuadratID,/location/sourceaccessioncode/_join/2,Not globally unique; unique only within Site |
|
| 16 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 17 |
QuadratID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",Not globally unique; unique only within Site |
|
| 18 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 19 |
QuadratID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",Not globally unique; unique only within Site |
|
| inputs/CTFS/Plot/VegBIEN.csv | ||
|---|---|---|
| 29 | 29 |
Latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 30 | 30 |
Longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings" |
| 31 | 31 |
CountryName,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2, |
| 32 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 33 |
PlotName,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 32 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 33 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 34 | 34 |
CountryID,,** No join mapping for *CountryID ** |
| 35 | 35 |
ReferenceX,,** No join mapping for *ReferenceX ** Rarely used |
| 36 | 36 |
ReferenceY,,** No join mapping for *ReferenceY ** Rarely used |
| inputs/SALVIAS/plotObservations/VegBIEN.csv | ||
|---|---|---|
| 142 | 142 |
DetType,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| 143 | 143 |
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/1",Brad: Map instead as for voucher_string |
| 144 | 144 |
SourceVoucher,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 145 |
Line,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",
|
|
| 146 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 147 |
PlotCode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 148 |
Line,/location/sourceaccessioncode/_join/2,
|
|
| 145 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 146 |
Line,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
| 147 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 148 |
Line,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
| 149 | 149 |
GenAuth,,** No join mapping for *GenAuth ** |
| 150 | 150 |
IsMorpho,,** No join mapping for *IsMorpho ** |
| 151 | 151 |
OrigAuth,,** No join mapping for *OrigAuth ** |
| inputs/SALVIAS/plotMetadata_/VegBIEN.csv | ||
|---|---|---|
| 66 | 66 |
plot_notes,/location/notespublic, |
| 67 | 67 |
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value, |
| 68 | 68 |
slope_gradient,/location/slopegradient_fraction/_alt/1, |
| 69 |
PlotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 70 |
SiteCode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
|
| 69 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 70 |
PlotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 71 | 71 |
Country_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation |
| 72 | 72 |
ElevSource,,** No join mapping for *ElevSource ** |
| 73 | 73 |
MethodCode,,** No non-empty join mapping for OMIT ** Not globally unique after lookup_MethodCode_Description is combined with PlotMethod |
| inputs/bien_web/observation/VegBIEN.csv | ||
|---|---|---|
| 68 | 68 |
countyParish,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
| 69 | 69 |
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
| 70 | 70 |
stateProvince,/location/locationplace/*_id/place/stateprovince, |
| 71 |
plotID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 72 |
plotCode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 71 |
plotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 72 |
plotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 73 | 73 |
abund,,** No join mapping for *abund ** |
| 74 | 74 |
abund1,,** No join mapping for *abund1 ** |
| 75 | 75 |
abund10,,** No join mapping for *abund10 ** |
| inputs/Madidi/Organism/VegBIEN.csv | ||
|---|---|---|
| 75 | 75 |
Field family,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/family, |
| 76 | 76 |
Field name,/location/locationevent/taxonoccurrence/taxondetermination[isoriginal=true]/*_id/taxonverbatim/genus,Often = Genera |
| 77 | 77 |
Specimen,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then", |
| 78 |
Number of subplot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",
|
|
| 79 |
Inventory code,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 80 |
Inventory name,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 81 |
Number of subplot,/location/sourceaccessioncode/_join/2,
|
|
| 78 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 79 |
Number of subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
| 80 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 81 |
Number of subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
| 82 | 82 |
Basal area,,"** No join mapping for *Basal area ** Would be basalDiameter, but need formula to translate" |
| 83 | 83 |
Bole height,,** No join mapping for *Bole height ** trunk height |
| 84 | 84 |
Circumference,,** No join mapping for *Circumference ** |
| inputs/Madidi/Plot/VegBIEN.csv | ||
|---|---|---|
| 98 | 98 |
Direction,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/1,Part files provide either this field or Orientación |
| 99 | 99 |
Orientación/exposicion,/location/slopeaspect_deg/_alt/1/_compass/value/_alt/2,Part files provide either this field or Direction |
| 100 | 100 |
Slope,/location/slopegradient_fraction/_alt/1, |
| 101 |
Inventory code,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 102 |
Inventory name,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 101 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 102 |
Inventory code,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 103 | 103 |
Minimum altitude,/location/verbatimelevation,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2]. |
| 104 | 104 |
|
| 105 | 105 |
[1] Using the following query: |
| inputs/SALVIAS-CSV/Organism/VegBIEN.csv | ||
|---|---|---|
| 144 | 144 |
det_type,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/cond/_eq:[right=indirect]/left","Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen." |
| 145 | 145 |
coll_number,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/1",Brad: Map instead as for voucher_string |
| 146 | 146 |
voucher_string,"/location/locationevent/taxonoccurrence/voucher/*_id/specimenreplicate/catalognumber_dwc/_if[@name=""if indirect voucher""]/then/_alt/2","Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below." |
| 147 |
subplot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists",
|
|
| 148 |
PLOT_ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 149 |
plot_code,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 150 |
subplot,/location/sourceaccessioncode/_join/2,
|
|
| 147 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 148 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists",
|
|
| 149 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 150 |
subplot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2",
|
|
| 151 | 151 |
collector_code,,** No join mapping for *collector_code ** Brad: OMIT |
| 152 | 152 |
comments,,** No join mapping for *comments ** Brad: OMIT |
| 153 | 153 |
fam_status,,** No join mapping for *fam_status ** Brad: OMIT. This will be determined later by using TNRS. |
| inputs/SALVIAS-CSV/Plot/VegBIEN.csv | ||
|---|---|---|
| 57 | 57 |
pol1,/location/locationplace/*_id/place/stateprovince,Brad: No; pol1=stateProvince |
| 58 | 58 |
slope_aspect,/location/slopeaspect_deg/_alt/1/_compass/value, |
| 59 | 59 |
slope_gradient,/location/slopegradient_fraction/_alt/1, |
| 60 |
PLOT_ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 61 |
plot_code,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
|
|
| 60 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 61 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1","Brad: This is artificial internal database ID; a unique identifier within SALVIAS DB to each plot, within the table plotMetadata."
|
|
| 62 | 62 |
recensused,,"** No join mapping for *recensused ** Brad: This is a 0/1 value, internal to SALVIAS. 1 indicates that a plot has >1 set of values, from different census events.; Aaron: Different censuses are distinguished in organisms data by different census_no values" |
| inputs/CVS/observation_/VegBIEN.csv | ||
|---|---|---|
| 28 | 28 |
OBSERVATION_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 29 | 29 |
PLOT_ID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 30 | 30 |
authorObsCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 31 |
PLOT_ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 31 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 32 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 32 | 33 |
COVERMETHOD_ID,,** No join mapping for *COVERMETHOD_ID ** |
| 33 | 34 |
PREVIOUSOBS_ID,,** No join mapping for *PREVIOUSOBS_ID ** |
| 34 | 35 |
SOILOBS_ID,,** No join mapping for *SOILOBS_ID ** |
| inputs/CVS/plot_/VegBIEN.csv | ||
|---|---|---|
| 41 | 41 |
slopeGradient,/location/slopegradient_fraction/_alt/1, |
| 42 | 42 |
maxSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/max, |
| 43 | 43 |
minSlopeGradient,/location/slopegradient_fraction/_alt/2/_avg/min, |
| 44 |
PLOT_ID,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1",
|
|
| 45 |
authorPlotCode,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2",
|
|
| 44 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 45 |
PLOT_ID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
|
| 46 | 46 |
Geographic Name,,** No join mapping for *Geographic Name ** |
| 47 | 47 |
REPLACEMENTPLOT_ID,,** No join mapping for *REPLACEMENTPLOT_ID ** |
| 48 | 48 |
River Basin,,** No join mapping for *River Basin ** |
| inputs/FIA/Organism/VegBIEN.csv | ||
|---|---|---|
| 31 | 31 |
County,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2, |
| 32 | 32 |
StateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2, |
| 33 | 33 |
StateProvince,/location/locationplace/*_id/place/stateprovince, |
| 34 |
PlotCD,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 34 |
PlotCD,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 35 |
PlotCD,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 35 | 36 |
HOM,,** No join mapping for *HOM ** |
| inputs/FIA/FIA_COND_unique/VegBIEN.csv | ||
|---|---|---|
| 6 | 6 |
PLT_CN,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then", |
| 7 | 7 |
PLT_CN,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 8 | 8 |
oldgrowth,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/1/_not/value", |
| 9 |
PLT_CN,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 9 |
PLT_CN,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 10 |
PLT_CN,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 10 | 11 |
ADFORCD,,** No join mapping for *ADFORCD ** |
| 11 | 12 |
ALSTK,,** No join mapping for *ALSTK ** |
| 12 | 13 |
ALSTKCD,,** No join mapping for *ALSTKCD ** |
| inputs/NVS/AggregateOccurrence/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 19 | 19 |
Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
| 20 |
Sub Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
|
| 21 |
Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 22 |
Sub Plot,/location/sourceaccessioncode/_join/2, |
|
| 20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
| 21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
| 23 | 22 |
Category,,** No join mapping for *Category ** |
| 24 | 23 |
Category Description,,** No join mapping for *Category Description ** |
| 25 | 24 |
Method Name,,** No join mapping for *Method Name ** |
| inputs/NVS/AggregateOccurrence/test.xml.ref | ||
|---|---|---|
| 78 | 78 |
</taxondetermination> |
| 79 | 79 |
</taxonoccurrence> |
| 80 | 80 |
</locationevent> |
| 81 |
<sourceaccessioncode> |
|
| 82 |
<_join> |
|
| 83 |
<1>$Plot</1> |
|
| 84 |
<2>$Sub Plot</2> |
|
| 85 |
</_join> |
|
| 86 |
</sourceaccessioncode> |
|
| 87 | 81 |
</location> |
| 88 | 82 |
</path> |
| 89 | 83 |
</_simplifyPath> |
| 90 | 84 |
</path> |
| 91 | 85 |
</_setDefault> |
| 92 | 86 |
</VegBIEN> |
| 93 |
Inserted 18 new rows into database |
|
| 87 |
Inserted 17 new rows into database |
|
| inputs/NVS/TaxonOccurrence.Understory/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 19 | 19 |
Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
| 20 |
Sub Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
|
| 21 |
Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 22 |
Sub Plot,/location/sourceaccessioncode/_join/2, |
|
| 20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
| 21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
| 23 | 22 |
Method Name,,** No join mapping for *Method Name ** |
| 24 | 23 |
Parent Plot Obs ID,,** No join mapping for *Parent Plot Obs ID ** |
| 25 | 24 |
Sample Method ID,,** No join mapping for *Sample Method ID ** |
| inputs/NVS/TaxonOccurrence/VegBIEN.csv | ||
|---|---|---|
| 17 | 17 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 18 | 18 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 19 | 19 |
Taxon Obs Note,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/notes, |
| 20 |
Sub Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
|
| 21 |
Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 22 |
Sub Plot,/location/sourceaccessioncode/_join/2, |
|
| 20 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
| 21 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
| 23 | 22 |
Herbivore,,** No join mapping for *Herbivore ** |
| 24 | 23 |
Method Name,,** No join mapping for *Method Name ** |
| 25 | 24 |
Severity,,** No join mapping for *Severity ** |
| inputs/NVS/StemObservation/VegBIEN.csv | ||
|---|---|---|
| 30 | 30 |
Species Name,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet", |
| 31 | 31 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_join_words/2/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1, |
| 32 | 32 |
Species Name,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet, |
| 33 |
Sub Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/cond/_exists", |
|
| 34 |
Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 35 |
Sub Plot,/location/sourceaccessioncode/_join/2, |
|
| 33 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/cond/_exists", |
|
| 34 |
Sub Plot,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/2", |
|
| 36 | 35 |
Alive State,,** No join mapping for *Alive State ** |
| 37 | 36 |
Association,,** No join mapping for *Association ** |
| 38 | 37 |
Association No,,** No join mapping for *Association No ** |
| inputs/NVS/Coordinates/VegBIEN.csv | ||
|---|---|---|
| 8 | 8 |
Datum,/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates/_join/1, |
| 9 | 9 |
XEast Long,"/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates/_join/2/_label[label=""x""]/value", |
| 10 | 10 |
YNorth Lat,"/location/locationplace/*_id/place/*_id/coordinates/verbatimcoordinates/_join/3/_label[label=""y""]/value", |
| 11 |
Plot,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/2", |
|
| 12 | 11 |
GPS,,** No join mapping for *GPS ** |
| 13 | 12 |
GPSFix,,** No join mapping for *GPSFix ** |
| 14 | 13 |
GPSPosition,,** No join mapping for *GPSPosition ** |
| inputs/VegBank/observation_/VegBIEN.csv | ||
|---|---|---|
| 29 | 29 |
authorobscode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 30 | 30 |
observation_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 31 | 31 |
plot_id,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists", |
| 32 |
plot_id,"/location/sourceaccessioncode/_join/1/_if[@name=""if subplot and unique only within parent""]/then/_first/1", |
|
| 32 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists", |
|
| 33 |
plot_id,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1", |
|
| 33 | 34 |
accessioncode,,** No join mapping for *accessioncode ** |
| 34 | 35 |
autotaxoncover,,** No join mapping for *autotaxoncover ** |
| 35 | 36 |
basalarea,,** No join mapping for *basalarea ** |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 401 | 401 |
maxSlopeGradient,//location/slopegradient_fraction, |
| 402 | 402 |
minSlopeGradient,//location/slopegradient_fraction, |
| 403 | 403 |
subplotID,//location/sourceaccessioncode, |
| 404 |
subplot,"//location/sourceaccessioncode/_if[@name=""if subplot and unique only within parent""]/cond/_exists",
|
|
| 405 |
locationID,"//location/sourceaccessioncode/_if[@name=""if subplot and unique only within parent""]/then",
|
|
| 406 |
locationName,"//location/sourceaccessioncode/_if[@name=""if subplot and unique only within parent""]/then",
|
|
| 407 |
subplot,//location/sourceaccessioncode,
|
|
| 404 |
locationID,"//location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
|
| 405 |
subplot,"//location/sourceaccessioncode/_if[@name=""if subplot""]/cond/_exists",
|
|
| 406 |
locationID,"//location/sourceaccessioncode/_if[@name=""if subplot""]/then",
|
|
| 407 |
subplot,"//location/sourceaccessioncode/_if[@name=""if subplot""]/then",
|
|
| 408 | 408 |
subplotX,//location/sublocationxposition_m, |
| 409 | 409 |
subplotY,//location/sublocationyposition_m, |
| 410 | 410 |
verbatimElevation,//location/verbatimelevation, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: locationID/locationName + subplot -> location.sourceaccessioncode mapping: Fixed bug where subplot was incorrectly being mapped to this field even when there was no location*. (This field can only be populated if both location* and subplot are specified.) Also only map locationID for this, to avoid inconsistencies where one table supplies locationID+subplot, while another table supplies locationName+subplot, but they both get mapped to the same field, preventing plots from being matched up with their observations when creating the analytical_stem.