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Revision 7126

Added by Aaron Marcuse-Kubitza almost 12 years ago

Added inputs/.TNRS/tnrs+accepted/, which self-joins the TNRS results to their parsed accepted names

View differences:

inputs/.TNRS/import_order.txt
1 1 
Source
2 
tnrs+accepted
2 3 
tnrs_accepted
3 4 
tnrs_other
4 5 
public.unscrubbed_taxondetermination_view
inputs/.TNRS/tnrs+accepted/create.sql
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SELECT
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tnrs.*
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, tnrs_accepted."Time_submitted"                  AS "Accepted_name.Time_submitted"
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, tnrs_accepted."Name_number"                     AS "Accepted_name.Name_number"
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, tnrs_accepted."Name_submitted"                  AS "Accepted_name.Name_submitted"
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, tnrs_accepted."Overall_score"                   AS "Accepted_name.Overall_score"
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, tnrs_accepted."Name_matched"                    AS "Accepted_name.Name_matched"
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, tnrs_accepted."Name_matched_rank"               AS "Accepted_name.Name_matched_rank"
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, tnrs_accepted."Name_score"                      AS "Accepted_name.Name_score"
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, tnrs_accepted."Name_matched_author"             AS "Accepted_name.Name_matched_author"
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, tnrs_accepted."Name_matched_url"                AS "Accepted_name.Name_matched_url"
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, tnrs_accepted."Author_matched"                  AS "Accepted_name.Author_matched"
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, tnrs_accepted."Author_score"                    AS "Accepted_name.Author_score"
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, tnrs_accepted."Family_matched"                  AS "Accepted_name.Family_matched"
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, tnrs_accepted."Family_score"                    AS "Accepted_name.Family_score"
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, tnrs_accepted."Name_matched_accepted_family"    AS "Accepted_name.Name_matched_accepted_family"
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, tnrs_accepted."Genus_matched"                   AS "Accepted_name.Genus_matched"
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, tnrs_accepted."Genus_score"                     AS "Accepted_name.Genus_score"
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, tnrs_accepted."Specific_epithet_matched"        AS "Accepted_name.Specific_epithet_matched"
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, tnrs_accepted."Specific_epithet_score"          AS "Accepted_name.Specific_epithet_score"
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, tnrs_accepted."Infraspecific_rank"              AS "Accepted_name.Infraspecific_rank"
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, tnrs_accepted."Infraspecific_epithet_matched"   AS "Accepted_name.Infraspecific_epithet_matched"
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, tnrs_accepted."Infraspecific_epithet_score"     AS "Accepted_name.Infraspecific_epithet_score"
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, tnrs_accepted."Infraspecific_rank_2"            AS "Accepted_name.Infraspecific_rank_2"
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, tnrs_accepted."Infraspecific_epithet_2_matched" AS "Accepted_name.Infraspecific_epithet_2_matched"
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, tnrs_accepted."Infraspecific_epithet_2_score"   AS "Accepted_name.Infraspecific_epithet_2_score"
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, tnrs_accepted."Annotations"                     AS "Accepted_name.Annotations"
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, tnrs_accepted."Unmatched_terms"                 AS "Accepted_name.Unmatched_terms"
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, tnrs_accepted."Taxonomic_status"                AS "Accepted_name.Taxonomic_status"
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, tnrs_accepted."Accepted_name"                   AS "Accepted_name.Accepted_name"
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, tnrs_accepted."Accepted_name_author"            AS "Accepted_name.Accepted_name_author"
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, tnrs_accepted."Accepted_name_rank"              AS "Accepted_name.Accepted_name_rank"
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, tnrs_accepted."Accepted_name_url"               AS "Accepted_name.Accepted_name_url"
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, tnrs_accepted."Accepted_name_species"           AS "Accepted_name.Accepted_name_species"
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, tnrs_accepted."Accepted_name_family"            AS "Accepted_name.Accepted_name_family"
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, tnrs_accepted."Selected"                        AS "Accepted_name.Selected"
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, tnrs_accepted."Source"                          AS "Accepted_name.Source"
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, tnrs_accepted."Warnings"                        AS "Accepted_name.Warnings"
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, tnrs_accepted."Accepted_name_lsid"              AS "Accepted_name.Accepted_name_lsid"
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FROM tnrs
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LEFT JOIN tnrs tnrs_accepted ON
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tnrs_accepted."Name_submitted" = NULLIF(array_to_string(ARRAY[
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    NULLIF(tnrs."Accepted_name_family", 'Unknown')
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    , tnrs."Accepted_name"
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    , tnrs."Accepted_name_author"
46 
], ' '), '')
47 
ORDER BY "Name_submitted"
48 
;
49 

  		




  
  50
  
    
ALTER TABLE :table ADD PRIMARY KEY ("Name_submitted");


  		












  

    
      inputs/.TNRS/tnrs+accepted/header.csv
    
  





  
  1
  
    
Time_submitted,Name_number,Name_submitted,Overall_score,Name_matched,Name_matched_rank,Name_score,Name_matched_author,Name_matched_url,Author_matched,Author_score,Family_matched,Family_score,Name_matched_accepted_family,Genus_matched,Genus_score,Specific_epithet_matched,Specific_epithet_score,Infraspecific_rank,Infraspecific_epithet_matched,Infraspecific_epithet_score,Infraspecific_rank_2,Infraspecific_epithet_2_matched,Infraspecific_epithet_2_score,Annotations,Unmatched_terms,Taxonomic_status,Accepted_name,Accepted_name_author,Accepted_name_rank,Accepted_name_url,Accepted_name_species,Accepted_name_family,Selected,Source,Warnings,Accepted_name_lsid,Accepted_name.Time_submitted,Accepted_name.Name_number,Accepted_name.Name_submitted,Accepted_name.Overall_score,Accepted_name.Name_matched,Accepted_name.Name_matched_rank,Accepted_name.Name_score,Accepted_name.Name_matched_author,Accepted_name.Name_matched_url,Accepted_name.Author_matched,Accepted_name.Author_score,Accepted_name.Family_matched,Accepted_name.Family_score,Accepted_name.Name_matched_accepted_family,Accepted_name.Genus_matched,Accepted_name.Genus_score,Accepted_name.Specific_epithet_matched,Accepted_name.Specific_epithet_score,Accepted_name.Infraspecific_rank,Accepted_name.Infraspecific_epithet_matched,Accepted_name.Infraspecific_epithet_score,Accepted_name.Infraspecific_rank_2,Accepted_name.Infraspecific_epithet_2_matched,Accepted_name.Infraspecific_epithet_2_score,Accepted_name.Annotations,Accepted_name.Unmatched_terms,Accepted_name.Taxonomic_status,Accepted_name.Accepted_name,Accepted_name.Accepted_name_author,Accepted_name.Accepted_name_rank,Accepted_name.Accepted_name_url,Accepted_name.Accepted_name_species,Accepted_name.Accepted_name_family,Accepted_name.Selected,Accepted_name.Source,Accepted_name.Warnings,Accepted_name.Accepted_name_lsid


  		












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