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/* ***************** 2011 STRI DB 'CREATE' MySQL Script *****************
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* *
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* Most of the 2011 db is based off of the 2007 db. *
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* This script creates the new tables of the 2011 db *
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* and creates the new attributes of existing tables *
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* Nothing is deleted in this script. The drop.sql *
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* script will remove excess data and schema. *
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* *
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***********************************************************************/
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/* ***************************** Developers *****************************
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* *
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* Bradley University, Computer Science Dept. *
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* Smithsonian Tropical Research Institute *
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* *
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* 2011 Capstone Project *
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* Mario Campos, Michael Koeber, Zach Caschetta *
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* *
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***********************************************************************/
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-- Quadrat TABLE
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ALTER TABLE Tree DROP FOREIGN KEY `Tree_ibfk_1`;
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ALTER TABLE CensusQuadrat DROP FOREIGN KEY `CensusQuadrat_ibfk_2`;
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ALTER TABLE Quadrat DROP PRIMARY KEY;
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ALTER TABLE Quadrat CHANGE COLUMN QuadratID QuadratID2 INT UNSIGNED;
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ALTER TABLE Quadrat ADD COLUMN (Area FLOAT UNSIGNED, IsStandardShape ENUM('Y','N') NOT NULL);
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ALTER TABLE Quadrat ADD COLUMN QuadratID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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-- CensusQuadrat TABLE
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ALTER TABLE DataEntry DROP FOREIGN KEY `DataEntry_ibfk_1`;
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ALTER TABLE DataCollection DROP FOREIGN KEY `DataCollection_ibfk_1`;
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ALTER TABLE CensusQuadrat CHANGE COLUMN QuadratID QuadratID2 INT UNSIGNED;
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ALTER TABLE CensusQuadrat ADD COLUMN QuadratID INT UNSIGNED NOT NULL;
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UPDATE CensusQuadrat CQ, Quadrat Q SET CQ.QuadratID=Q.QuadratID WHERE CQ.QuadratID2=Q.QuadratID2 AND CQ.PlotID=Q.PlotID;
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ALTER TABLE CensusQuadrat DROP PRIMARY KEY;
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ALTER TABLE CensusQuadrat ADD COLUMN CensusQuadratID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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ALTER TABLE CensusQuadrat ADD FOREIGN KEY (`QuadratID`) REFERENCES `Quadrat` (`QuadratID`);
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-- DataCollection TABLE
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ALTER TABLE DataCollection DROP PRIMARY KEY;
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ALTER TABLE DataCollection ADD COLUMN DataCollectionID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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ALTER TABLE DataCollection ADD COLUMN PersonnelRoleID INT UNSIGNED NOT NULL;
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ALTER TABLE DataCollection CHANGE COLUMN QuadratID QuadratID2 INT UNSIGNED;
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ALTER TABLE DataCollection ADD COLUMN QuadratID INT UNSIGNED NOT NULL;
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UPDATE DataCollection D, Quadrat Q SET D.QuadratID=Q.QuadratID WHERE D.QuadratID2=Q.QuadratID2;
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ALTER TABLE DataCollection ADD FOREIGN KEY (`QuadratID`) REFERENCES `Quadrat` (`QuadratID`);
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ALTER TABLE DataCollection ADD FOREIGN KEY (`CensusID`) REFERENCES `Census` (`CensusID`);
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-- PersonnelRole TABLE
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CREATE TABLE PersonnelRole (PersonnelRoleID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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PersonnelID SMALLINT UNSIGNED NOT NULL,
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RoleID SMALLINT UNSIGNED NOT NULL
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)ENGINE=INNODB;
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INSERT INTO PersonnelRole (PersonnelID,RoleID) SELECT PersonnelID, RoleID FROM DataCollection;
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ALTER TABLE PersonnelRole ADD FOREIGN KEY (RoleID) REFERENCES RoleReference(RoleID);
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ALTER TABLE PersonnelRole ADD FOREIGN KEY (PersonnelID) REFERENCES Personnel(PersonnelID);
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UPDATE DataCollection D, PersonnelRole P SET D.PersonnelRoleID=P.PersonnelRoleID WHERE D.PersonnelID=P.PersonnelID AND D.RoleID=P.RoleID;
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ALTER TABLE DataCollection DROP FOREIGN KEY `DataCollection_ibfk_2`;
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ALTER TABLE DataCollection DROP FOREIGN KEY `DataCollection_ibfk_3`;
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ALTER TABLE DataCollection ADD FOREIGN KEY (`PersonnelRoleID`) REFERENCES `PersonnelRole` (`PersonnelRoleID`);
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-- Tree TABLE
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ALTER TABLE Tree CHANGE COLUMN QuadratID QuadratID2 INT UNSIGNED;
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ALTER TABLE Tree ADD COLUMN QuadratID INT UNSIGNED;
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UPDATE Tree T, Quadrat Q SET T.QuadratID=Q.QuadratID WHERE T.QuadratID2=Q.QuadratID2;
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-- Stem TABLE
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ALTER TABLE Measurement DROP FOREIGN KEY `Measurement_ibfk_2`;
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-- ALTER TABLE Remeasurement DROP FOREIGN KEY to stem --FINISH THIS LINE
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ALTER TABLE Stem DROP PRIMARY KEY;
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ALTER TABLE Stem ADD COLUMN (QuadratID INT UNSIGNED NOT NULL,
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StemNumber INT UNSIGNED NOT NULL,
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Moved ENUM('Y','N') NOT NULL,
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GX FLOAT,
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GY FLOAT,
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GZ FLOAT,
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PX FLOAT,
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PY FLOAT,
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PZ FLOAT,
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QX FLOAT,
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QY FLOAT,
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QZ FLOAT
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);
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UPDATE Stem S, Tree T SET S.QuadratID=T.QuadratID WHERE S.TreeID=T.TreeID;
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UPDATE Stem S1, Stem S2 SET S1.StemNumber=S2.StemID WHERE S1.StemID=S2.StemID AND S1.TreeID=S2.TreeID;
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UPDATE Stem S, Tree T SET S.QX=T.x, S.QY=T.y WHERE S.TreeID=T.TreeID;
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ALTER TABLE Stem DROP COLUMN StemID;
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ALTER TABLE Stem ADD COLUMN StemID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY FIRST;
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-- Measurement(DBH) TABLE
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ALTER TABLE LogMeasurementHistory DROP FOREIGN KEY `LogMeasurementHistory_ibfk_1`;
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ALTER TABLE MeasurementAttributes DROP FOREIGN KEY `MeasurementAttributes_ibfk_1`;
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ALTER TABLE Measurement DROP PRIMARY KEY;
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ALTER TABLE Measurement ADD COLUMN DBHID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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ALTER TABLE Measurement ADD COLUMN Comments VARCHAR(128);
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ALTER TABLE Measurement MODIFY COLUMN HOM CHAR(16);
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UPDATE Measurement M, Stem S SET M.StemID=S.StemID WHERE M.StemID=S.StemNumber AND M.TreeID=S.TreeID;
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ALTER TABLE Measurement ADD FOREIGN KEY (`StemID`) REFERENCES `Stem` (`StemID`);
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-- MeasurementAttributes TABLE
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ALTER TABLE MeasurementAttributes ADD COLUMN DBHID INT UNSIGNED;
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UPDATE MeasurementAttributes MA, Measurement M SET MA.DBHID=M.DBHID WHERE MA.MeasureID=M.MeasureID;
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ALTER TABLE MeasurementAttributes ADD FOREIGN KEY (`DBHID`) REFERENCES `Measurement` (`DBHID`);
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ALTER TABLE LogMAttrHistory DROP FOREIGN KEY `LogMAttrHistory_ibfk_1`;
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ALTER TABLE MeasurementAttributes DROP PRIMARY KEY;
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ALTER TABLE MeasurementAttributes ADD COLUMN DBHAttID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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-- Remeasurement TABLE
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ALTER TABLE RemeasAttribs DROP FOREIGN KEY `RemeasAttribs_ibfk_1`;
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ALTER TABLE Remeasurement DROP PRIMARY KEY;
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ALTER TABLE Remeasurement CHANGE COLUMN RemeasureID RemeasureID2 INT UNSIGNED;
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ALTER TABLE Remeasurement ADD COLUMN RemeasureID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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UPDATE Remeasurement R, Stem S SET R.StemID=S.StemID WHERE R.StemID=S.StemNumber AND R.TreeID=S.TreeID;
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ALTER TABLE Remeasurement ADD FOREIGN KEY (`StemID`) REFERENCES `Stem` (`StemID`);
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-- RemeasAttribs TABLE
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ALTER TABLE RemeasAttribs CHANGE COLUMN RemeasureID RemeasureID2 INT UNSIGNED;
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ALTER TABLE RemeasAttribs ADD COLUMN RemeasureID INT UNSIGNED NOT NULL;
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UPDATE RemeasAttribs RA, Remeasurement R SET RA.RemeasureID=R.RemeasureID WHERE RA.RemeasureID2=R.RemeasureID2;
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ALTER TABLE RemeasAttribs DROP PRIMARY KEY;
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ALTER TABLE RemeasAttribs ADD COLUMN RmAttID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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ALTER TABLE RemeasAttribs ADD FOREIGN KEY (`RemeasureID`) REFERENCES `Remeasurement` (`RemeasureID`);
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-- TreeAttributes TABLE
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ALTER TABLE LogTreeAttrHistory DROP FOREIGN KEY `LogTreeAttrHistory_ibfk_1`;
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ALTER TABLE TreeAttributes DROP PRIMARY KEY;
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ALTER TABLE TreeAttributes ADD COLUMN TAttID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY;
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-- rename tables
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ALTER TABLE Measurement RENAME TO DBH;
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ALTER TABLE MeasurementAttributes RENAME TO DBHAttributes;
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-- add new tables
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CREATE TABLE IF NOT EXISTS FeatureTypes (
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FeatureTypeID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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Type VARCHAR(32) NOT NULL
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) ENGINE=INNODB;
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CREATE TABLE IF NOT EXISTS Features (
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FeatureID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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FeatureTypeID INT UNSIGNED NOT NULL,
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Name VARCHAR(32) NOT NULL,
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ShortDescrip VARCHAR(32),
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LongDescrip VARCHAR(128),
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FOREIGN KEY (`FeatureTypeID`) REFERENCES `FeatureTypes` (`FeatureTypeID`)
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) ENGINE=INNODB;
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CREATE TABLE IF NOT EXISTS Coordinates (
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CoorID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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FeatureID INT UNSIGNED,
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PlotID INT UNSIGNED,
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QuadratID INT UNSIGNED,
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GX FLOAT(8),
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GY FLOAT(8),
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GZ FLOAT(8),
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PX FLOAT(8),
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PY FLOAT(8),
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PZ FLOAT(8),
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QX FLOAT(8),
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QY FLOAT(8),
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QZ FLOAT(8),
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CoordinateNo INT UNSIGNED,
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FOREIGN KEY (`FeatureID`) REFERENCES `Features` (`FeatureID`),
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FOREIGN KEY (`PlotID`) REFERENCES `Site` (`PlotID`),
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FOREIGN KEY (`QuadratID`) REFERENCES `Quadrat` (`QuadratID`)
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) ENGINE=INNODB;
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CREATE TABLE IF NOT EXISTS MeasurementType (
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MeasurementTypeID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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UOM VARCHAR(32) NOT NULL,
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Type VARCHAR(256)
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) ENGINE=INNODB;
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CREATE TABLE IF NOT EXISTS Measurement (
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MeasureID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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CensusID INT UNSIGNED NOT NULL,
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TreeID INT UNSIGNED NOT NULL,
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StemID INT UNSIGNED NOT NULL,
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MeasurementTypeID INT UNSIGNED NOT NULL,
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Measure VARCHAR(256) NOT NULL,
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ExactDate DATE NOT NULL,
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Comments VARCHAR(128),
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FOREIGN KEY (`CensusID`) REFERENCES `Census` (`CensusID`),
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FOREIGN KEY (`TreeID`) REFERENCES `Tree` (`TreeID`),
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FOREIGN KEY (`StemID`) REFERENCES `Stem` (`StemID`),
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FOREIGN KEY (`MeasurementTypeID`) REFERENCES `MeasurementType` (`MeasurementTypeID`)
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)ENGINE=INNODB;
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CREATE TABLE IF NOT EXISTS MeasurementAttributes (
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MAttID INT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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MeasureID INT UNSIGNED NOT NULL,
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CensusID INT UNSIGNED NOT NULL,
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TSMID INT UNSIGNED NOT NULL,
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FOREIGN KEY (`MeasureID`) REFERENCES `Measurement` (`MeasureID`),
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FOREIGN KEY (`CensusID`) REFERENCES `Census` (`CensusID`),
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FOREIGN KEY (`TSMID`) REFERENCES `TSMAttributes` (`TSMID`)
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)ENGINE=INNODB;
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CREATE TABLE IF NOT EXISTS Log (
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LogID BIGINT UNSIGNED NOT NULL AUTO_INCREMENT PRIMARY KEY,
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PersonnelID SMALLINT UNSIGNED,
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ChangedTable VARCHAR(32) NOT NULL,
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PrimaryKey VARCHAR(32) NOT NULL,
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ChangedColumn VARCHAR(32) NOT NULL,
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ChangeDate DATE,
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ChangeTime TIMESTAMP,
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Description VARCHAR(256),
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Action ENUM('I','D','U') NOT NULL,
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Old VARCHAR(512) NOT NULL,
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New VARCHAR(512) NOT NULL,
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FOREIGN KEY (`PersonnelID`) REFERENCES `Personnel` (`PersonnelID`)
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)ENGINE=INNODB;
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-- modify existing tables to meet new schema's specs
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ALTER TABLE Site ADD COLUMN ( Area INT UNSIGNED NOT NULL,
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QDimX INT UNSIGNED NOT NULL,
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QDimY INT UNSIGNED NOT NULL,
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GUOM VARCHAR(32) NOT NULL,
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GZUOM VARCHAR(32) NOT NULL,
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PUOM VARCHAR(32) NOT NULL,
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QUOM VARCHAR(32) NOT NULL,
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GCoorCollected VARCHAR(32),
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PCoorCollected VARCHAR(32),
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QCoorCollected VARCHAR(32)
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);
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ALTER TABLE Stem ADD COLUMN ( GX FLOAT(8),
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GY FLOAT(8),
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GZ FLOAT(8),
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PX FLOAT(8),
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PY FLOAT(8),
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PZ FLOAT(8),
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QX FLOAT(8),
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QY FLOAT(8),
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QZ FLOAT(8),
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Moved ENUM('Y','N') NOT NULL
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);
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ALTER TABLE Census MODIFY COLUMN PlotCensusNumber CHAR(16);
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