Project

General

Profile

« Previous | Next » 

Revision 7155

Added by Aaron Marcuse-Kubitza almost 12 years ago

inputs/.TNRS/public.unscrubbed_taxondetermination_view/map.csv: Omit Infraspecific_rank to help avoid creating a separate, parsed taxonlabel. Don't map to taxonRank because Name_matched_rank is populated more often.

View differences:

inputs/.TNRS/public.unscrubbed_taxondetermination_view/map.csv
18 18 
Genus_score,matchedGenusFit_fraction,,
19 19 
Specific_epithet_matched,specificEpithet,,
20 20 
Specific_epithet_score,matchedSpeciesFit_fraction,,
21 
Infraspecific_rank,verbatimTaxonRank,,
21 
Infraspecific_rank,OMIT,,Omitted because Name_matched_rank is populated more often
22 22 
Infraspecific_epithet_matched,infraspecificEpithet,,
23 23 
Infraspecific_epithet_score,*Infraspecific_epithet_score,,
24 24 
Infraspecific_rank_2,UNUSED,,
inputs/.TNRS/public.unscrubbed_taxondetermination_view/VegBIEN.csv
40 40 
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values
41 41 
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet,
42 42 
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/then",
43 
Infraspecific_rank,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/verbatimrank,
44 43 
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family/_first/1,Contains family based on matched name
45 44 
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family/_first/2,Contains family in original string (uncommon)
46 45 
Name_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/1,
......
77 76 
Infraspecific_epithet_2_matched,,** No non-empty join mapping for UNUSED **
78 77 
Infraspecific_epithet_2_score,,** No non-empty join mapping for UNUSED **
79 78 
Infraspecific_epithet_score,,** No join mapping for *Infraspecific_epithet_score **
79 
Infraspecific_rank,,** No non-empty join mapping for OMIT ** Omitted because Name_matched_rank is populated more often
80 80 
Infraspecific_rank_2,,** No non-empty join mapping for UNUSED **
81 81 
Name_number,,** No non-empty join mapping for OMIT ** Identifies name only within one TNRS batch. Omitted because not globally unique.
82 82 
Name_score,,** No join mapping for *Name_score **
inputs/.TNRS/public.unscrubbed_taxondetermination_view/test.xml.ref
76 76 
                                                    </parent_id>
77 77 
                                                    <rank>$Name_matched_rank</rank>
78 78 
                                                    <sourceaccessioncode>$Name_matched_url</sourceaccessioncode>
79 
                                                    <taxonlabel fkey="matched_label_id">
80 
                                                        <taxonepithet>$Unmatched_terms</taxonepithet>
81 
                                                        <taxonverbatim><verbatimrank>$Infraspecific_rank</verbatimrank></taxonverbatim>
82 
                                                    </taxonlabel>
79 
                                                    <taxonlabel fkey="matched_label_id"><taxonepithet>$Unmatched_terms</taxonepithet></taxonlabel>
83 80 
                                                    <taxonomicname>
84 81 
                                                        <_merge_prefix>
85 82 
                                                            <prefix><_taxon_family_require_std><family>$Name_matched_accepted_family</family></_taxon_family_require_std></prefix>
inputs/.TNRS/public.unscrubbed_taxondetermination_view/new_terms.csv
13 13 
Genus_score,matchedGenusFit_fraction,,
14 14 
Specific_epithet_matched,specificEpithet,,
15 15 
Specific_epithet_score,matchedSpeciesFit_fraction,,
16 
Infraspecific_rank,verbatimTaxonRank,,
16 
Infraspecific_rank,OMIT,,Omitted because Name_matched_rank is populated more often
17 17 
Infraspecific_epithet_matched,infraspecificEpithet,,
18 18 
Infraspecific_rank_2,UNUSED,,
19 19 
Infraspecific_epithet_2_matched,UNUSED,,

Also available in: Unified diff