Revision 7156
Added by Aaron Marcuse-Kubitza over 11 years ago
| inputs/.TNRS/public.unscrubbed_taxondetermination_view/VegBIEN.csv | ||
|---|---|---|
| 38 | 38 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2", |
| 39 | 39 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3", |
| 40 | 40 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values |
| 41 |
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
|
| 42 | 41 |
Unmatched_terms,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/morphospecies/_if[@name=""if has verbatim name""]/then", |
| 43 | 42 |
Name_matched_accepted_family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family/_first/1,Contains family based on matched name |
| 44 | 43 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family/_first/2,Contains family in original string (uncommon) |
| inputs/.TNRS/public.unscrubbed_taxondetermination_view/test.xml.ref | ||
|---|---|---|
| 76 | 76 |
</parent_id> |
| 77 | 77 |
<rank>$Name_matched_rank</rank> |
| 78 | 78 |
<sourceaccessioncode>$Name_matched_url</sourceaccessioncode> |
| 79 |
<taxonlabel fkey="matched_label_id"><taxonepithet>$Unmatched_terms</taxonepithet></taxonlabel> |
|
| 80 | 79 |
<taxonomicname> |
| 81 | 80 |
<_merge_prefix> |
| 82 | 81 |
<prefix><_taxon_family_require_std><family>$Name_matched_accepted_family</family></_taxon_family_require_std></prefix> |
| inputs/.TNRS/tnrs_other/VegBIEN.csv | ||
|---|---|---|
| 36 | 36 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2", |
| 37 | 37 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3", |
| 38 | 38 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values |
| 39 |
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
|
| 40 | 39 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 41 | 40 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author,Contains author in original string |
| 42 | 41 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/family,Contains family in original string (uncommon) |
| inputs/.TNRS/tnrs_other/test.xml.ref | ||
|---|---|---|
| 107 | 107 |
<4>$Overall_score</4> |
| 108 | 108 |
</_max> |
| 109 | 109 |
</matched_label_fit_fraction> |
| 110 |
<taxonepithet>$Unmatched_terms</taxonepithet> |
|
| 111 | 110 |
<taxonomicname>$Name_submitted</taxonomicname> |
| 112 | 111 |
<taxonverbatim> |
| 113 | 112 |
<author>$Author_matched</author> |
| inputs/.TNRS/tnrs_accepted/VegBIEN.csv | ||
|---|---|---|
| 40 | 40 |
Genus_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2", |
| 41 | 41 |
Specific_epithet_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3", |
| 42 | 42 |
Overall_score,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4",Assuming is a fraction based on the range of values |
| 43 |
Unmatched_terms,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
|
| 44 | 43 |
Name_submitted,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 45 | 44 |
Author_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author,Contains author in original string |
| 46 | 45 |
Family_matched,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/family,Contains family in original string (uncommon) |
| inputs/.TNRS/tnrs_accepted/test.xml.ref | ||
|---|---|---|
| 83 | 83 |
<4>$Overall_score</4> |
| 84 | 84 |
</_max> |
| 85 | 85 |
</matched_label_fit_fraction> |
| 86 |
<taxonepithet>$Unmatched_terms</taxonepithet> |
|
| 87 | 86 |
<taxonomicname>$Name_submitted</taxonomicname> |
| 88 | 87 |
<taxonverbatim> |
| 89 | 88 |
<author>$Author_matched</author> |
| mappings/VegCore-VegBIEN.csv | ||
|---|---|---|
| 255 | 255 |
matchedGenusFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/2", |
| 256 | 256 |
matchedSpeciesFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/3", |
| 257 | 257 |
matchedTaxonFit_fraction,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else/_max/4", |
| 258 |
morphospecies,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonepithet, |
|
| 259 | 258 |
verbatimScientificName,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonomicname, |
| 260 | 259 |
verbatimScientificNameAuthorship,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/author, |
| 261 | 260 |
verbatimFamily,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel:[@fkey=matched_label_id]/taxonverbatim/family, |
| mappings/for_review/VegCore-VegBIEN.csv | ||
|---|---|---|
| 255 | 255 |
matchedGenusFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
| 256 | 256 |
matchedSpeciesFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
| 257 | 257 |
matchedTaxonFit_fraction,"//taxonlabel/matched_label_fit_fraction/_if[@name=""if has taxondetermination""]/else", |
| 258 |
morphospecies,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonepithet, |
|
| 259 | 258 |
verbatimScientificName,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonomicname, |
| 260 | 259 |
verbatimScientificNameAuthorship,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/author, |
| 261 | 260 |
verbatimFamily,//taxonoccurrence/taxondetermination[]/*_id/taxonverbatim/*_id/taxonlabel/taxonlabel/taxonverbatim/family, |
Also available in: Unified diff
mappings/VegCore-VegBIEN.csv: Don't map morphospecies to the parsed taxonlabel's taxonepithet, because this causes an extra, parsed taxonlabel to be created for TNRS.public.unscrubbed_taxondetermination_view. It is not needed by the other TNRS tables.