Project

General

Profile

1 4857 aaronmk
2
"Calcio intercambiable (WSP S-5,10–cmolc/Kg–0.016)",calcium,,
3
"Carbón Orgánico (WSP S-9,10–%–0.06)",carbon,,
4
"Magnesio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",magnesium,,
5
"Materia Orgánica (WSP S-9,10–%–0.1)",organic,,
6
"Potasio intercambiable (WSP S-5,10–cmolc/Kg–0.0053)",potassium,,
7
"Sodio intercambiable (WSP S-5,10–cmolc/Kg–0.00083)",sodium,,
8
%cover,coverPercent,,
9
-----
10
-----"
11 4887 aaronmk
1ha Plot Number,plotName,,
12
1ha Plot X Coordinate,organismX,,
13
1ha Plot Y Coordinate,organismY,,
14 4857 aaronmk
Accession Number,occurrenceID,,
15
Accuracy,coordinateUncertaintyInMeters,,
16
Acidez intercambiable (ISRIC 11–cmolc/Kg–0.05),acidity,,
17
Addcoll,recordedBy,/_join/2,
18
AgeClass,lifeStage,,
19
Altitude,elevationInMeters,,"Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2].
20
Arcilla (DIN 18 123–%–1),clay,,
21
Area,plotArea_ha,,"""0.1 ha transects"" (""Madidi Transects"" description in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/BIEN2.datasources.xlsx>)"
22
Arena (DIN 18 123–%–2.5),sand,,
23
AuthorOfScientificName,scientificNameAuthorship,,
24
Autor (revised),scientificNameAuthorship,,
25
Barcode,catalogNumber,,
26
CIC (ISRIC 11–cmolc/Kg–0.05),cationExchangeCapacity,,
27
CatalogNO,catalogNumber,,
28
CatalogNumberNumeric,catalogNumber,/_alt/1,
29
Colldd,dayCollected,,
30
Collect Date,dateCollected,,
31
CollectionCD,collectionCode,,
32 4887 aaronmk
CollectionDate,eventDate,,
33 4857 aaronmk
Collmm,monthCollected,,
34
Collyy,yearCollected,,
35
Conductividad electrica (ASPT 6–µS/cm– 1 - 10000),conductivity,,
36
DateInfo,UNUSED,,
37
DetType,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
38
Detby,identifiedBy,,
39
Determined by,identifiedBy,,
40
Detyy,yearIdentified,,
41 4887 aaronmk
Diameter at 1.3m,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
42
Diameter,diameterBreastHeight_cm,,"""Tree diameter measurement. {cm}"" (Diameter definition on p. 7 at <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/TEAM/_src/TEAM-DataPackage-20120920191251_3859/Vegetation+-+Trees+&+Lianas/Vegetation-Tree-and-Liana-Metadata-1.5.pdf>)"
43
Diameter,diameterBreastHeight_cm,,Assuming units based on the range and precision of values
44 4857 aaronmk
Direction,slopeAspect,/_alt/1,Part files provide either this field or Orientación
45
Ecology,habitat,,
46
Elev,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
47
Expedition name,projectName,,Consistent (globally unique) between PPM and PT data
48
Expedition number,projectID,,Consistent (globally unique) between PPM and PT data
49
Expedition,projectName,,
50
FROM ""Madidi"".""Plot""
51
FROM ""SALVIAS"".organisms
52
FROM ""SALVIAS-CSV"".organisms
53
Family (revised),family,,
54
Field family,verbatimFamily,,
55
Field name,verbatimGenus,,Often = Genera
56
First evaluation,eventDate,,
57
Format,preparations,,
58
Full Taxon Name,scientificName,,
59
Fósforo disponible (ISRIC 14-2–mg/Kg–1.5),phosphorus,,
60
GBIFFamilyOriginal,verbatimFamily,,
61
GBIFGenusOriginal,verbatimGenus,,
62
GROUP BY ""Altitude""::real , ""Locality""
63
GROUP BY ""Minimum altitude"" , ""Locality""
64
GROUP BY ""PLOT_ID"", subplot
65
GROUP BY ""PlotID"", ""Line""
66
Gazetteer,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/1",
67
GenBankNum,associatedSequences,"/_label[label=""GenBank""]/value",
68
Genera,genus,,
69
GeorefMethod,georeferenceProtocol,,
70
HAVING count(DISTINCT census_date) > 1
71
HorizontalDatum,UNUSED,,
72
IdentificationModifier,identificationQualifier,,
73
Ind,recordNumber,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
74
Index collector,recordedBy,,
75
InfraSpecificLevel,UNUSED,,
76
InstitutionCD,institutionCode,,
77
Inventory code,locationID,,
78
Inventory name,plotName,,
79
LastDateModified,dcterms:modified,,
80
Lat (-=S),verbatimLatitude,"/_replace:[""\?$""=]/value",
81
Lat,decimalLatitude,,
82
LatDec,decimalLatitude,,
83
LatLongComments,georeferenceRemarks,,
84
LatestDateCollected,dateCollected,,
85
Latitude (DMS),verbatimLatitude,,
86
Liana presence,lianaInfestation,,
87
Limo (DIN 18 123–%–1),silt,,
88
Line,subplot,,
89
Locality description,communityName,,Often begins with the text in Vegetation type
90
Locality_Description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
91
Locnotes,verbatimLocality,/_join/2,
92
Long (-=W),verbatimLongitude,"/_replace:[""\?$""=]/value",
93
Long,decimalLongitude,,
94
LongDec,decimalLongitude,,
95
Longitude (DMS),verbatimLongitude,,
96
MajorGeo,continent,,
97
MaximumElevationInMeter,maximumElevationInMeters,,
98
MeasDay,dayCollected,,
99
MeasMon,monthCollected,,
100
MeasYear,yearCollected,,
101
MeasureID,individualID,,
102
Method,samplingProtocol,,
103
Minimum altitude,verbatimElevation_m,,"This is a range [1], not a minimum. Assuming units are m based on the range of values [1] and the region the data is from (Madidi National Park) [2].
104
MinimumElevationInMeter,minimumElevationInMeters,,
105 4887 aaronmk
Name,plotName,,
106
Names of Collectors,recordedBy,,
107 4857 aaronmk
Newgazett,verbatimLocality,"/_join/1/_label[label=""gazetteer""]/value/_join/2",Only used in 1 row
108
Nitrógeno total (ISRIC 6–%–0.0014),nitrogen,,
109
NoInd,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
110
NoInd,stemCount,,
111
Number of subplot,subplot,,
112
Number,recordNumber,,
113
OBSERVATION_ID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
114
ORDER BY ""Altitude""::real DESC
115
Observaciones,plotNotes,,
116 4887 aaronmk
Observation Date,eventDate,,
117 4857 aaronmk
Observations,fieldNotes,,
118
Orientación/exposicion,slopeAspect,/_alt/2,Part files provide either this field or Direction
119
OrigFamily,verbatimFamily,,Brad: OMIT
120
OrigGenus,verbatimGenus,,
121
OrigSpecies,verbatimSpecificEpithet,,Brad: OMIT
122
OriginalCoordinateSystem,verbatimSRS,,
123
Phenology,reproductiveCondition,,
124
PlantFungusDescription,fieldNotes,"/_join/2/_label[label=""plant fungus""]/value",
125
PlotCD,locationID,,
126
PlotCode,plotName,,
127
PlotMethod,samplingProtocol,,
128
PlotObsID,individualID,,
129
PlotObsID,individualID,,"Brad: Neither is correct; this is just an internal ID for table plotObservations. However, it has the important property of uniquely identifying an ""observation"", which is an individual tree, in the case of an individual observation, or a records of a species with an associated count of individuals or measurement of percent cover, in the case of aggregate observations. Not sure where to store this. Main point is that it is not part of the original data, but an auto_increment added later."
130
PolDiv1,stateProvince,,Brad: No; pol1=stateProvince
131
Precip,precipitation,,
132
Prefix,UNUSED,,
133
Qualifier,identificationQualifier,,
134
RelatedCatalogedItems,relatedResourceID,/_alt/2,Used only when OtherCatalogNumbers is NULL
135
SELECT ""Altitude""::real, ""Locality""
136
SELECT ""Minimum altitude"", ""Locality""
137
SELECT ""PLOT_ID"", subplot, count(DISTINCT census_date) AS census_date_count
138
SELECT ""PlotID"", ""Line"", count(DISTINCT census_date) AS census_date_count
139
SELECT count(*) FROM ""SpeciesLink"".specimens
140
SciName,scientificName,,
141
ScientificNameOriginal,verbatimScientificName,,
142
SeriesName,collectionCode,,
143 4887 aaronmk
Site Name,projectName,,
144 4857 aaronmk
SiteCode,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
145
SizeOfSite,plotArea_ha,,"""Size in hectares"" (SizeOfSite comments in <https://projects.nceas.ucsb.edu/nceas/projects/bien/repository/raw/inputs/CTFS/_src/ctfs-comments_worksheet.xls>)"
146
Slope,slopeGradient,,
147
SourceVoucher,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
148 4887 aaronmk
Spatial Method,samplingProtocol,,
149 4857 aaronmk
Specie+autor,scientificNameWithAuthorship,,
150
Species and morphotypes,scientificName,,"Contains less than ""Specie+autor"""
151
SpeciesAuthority,scientificNameAuthorship,,
152
Specimen,catalogNumber,,
153 4887 aaronmk
Subplot Number,subplot,,
154 4857 aaronmk
Substrate,locality,"/_join/2/_label[label=""substrate""]/value",
155
Suffix,UNUSED,,
156
Tag number,tag,,
157
Temp,temperature,,
158
Textural class,texture,,
159
TimeCollected,eventTime,,
160
Tissues,UNUSED,,
161
Topographical situation,landform,,
162
Total height,height,,
163 4887 aaronmk
Tree Number,tag,,
164 4857 aaronmk
Tree number,recordNumber,,
165
TreeTag,tag,,
166
Trunk,authorStemCode,,
167
Typology,typeStatus,,
168
UniqueNYInternalRecordNumber,occurrenceID,,
169
Vegetation type,communityID,,
170
Vegetation,locality,"/_join/3/_label[label=""vegetation""]/value",
171
VerbatimCollectingDate,dateCollected,/_alt/0,
172
WHERE ""Altitude"" IS NOT NULL AND ""Altitude"" != ' 1430'
173
WHERE ""Line"" IS NOT NULL AND census_date IS NOT NULL
174
WHERE ""Minimum altitude"" IS NOT NULL
175
WHERE COALESCE(""dwc_curatorial_FieldNumber"", ""dwc_terms_fieldNumber"", ""conceptual_darwin_2003_1_0_FieldNumber"") != ""dwc_terms_recordNumber""
176
WHERE subplot IS NOT NULL AND census_date IS NOT NULL
177
[1] Using the following query:
178
[2] This map shows both flat and mountainous regions: <https://maps.google.com/maps/ms?ie=UTF8&hl=en&t=h&msa=0&msid=103363035880599665829.00047e9cf84b87448387d&ll=-13.96448,-68.380065&spn=3.730927,4.669189&z=7>"
179
accession,occurrenceID,,
180
accession_number,occurrenceID,,
181
acronym,collectionCode,,
182
area,plotArea_m2,,"""Total area of the plot in m2"" (area definition at <http://vegbank.org/vegbank/views/dba_tabledescription_detail.jsp?view=detail&wparam=plot&entity=dba_tabledescription&where=where_tablename>)"
183
area|country|territory,country,,
184
auth,scientificNameAuthorship,,Brad: This is the author of the scientificName.
185
authorplantname,verbatimScientificName,,
186
authorplotcode,plotName,,
187
authors,scientificNameAuthorship,,
188
basal_diam,basalDiameter,,
189
campus,fieldNotes,"/_join/5/_label[label=""campus""]/value",
190
census_date,eventDate,,"This is for the subplot, not the organism, as all organisms in a subplot have the same value for it. The following query returns no rows:
191
census_no,censusNumber,,"Brad: Assigned by SALVIAS. 1 for first plot, then 2, 3, etc. I can't recall if we even have repeat censuses in SALVIAS. Probably not."
192
cf,identificationQualifier,,
193
cf_aff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
194
cfaff,identificationQualifier,,"Brad: Not sure where this goes. Indicator of identification uncertainty. 'cf.'=similar to the species listed, 'aff.'=related to the species list, but not the same. You'll need to check with Bob and with Nick where these go in VegX and VegBank."
195
clay_percent,clay,"/_units:[default=""%"",to=]/value",
196
coll_day,dayCollected,,
197
coll_firstname,recordedBy.givenName,,Brad: See comment above
198
coll_lastname,recordedBy.surName,,"Brad: This is the collector of a separate specimen which vouchers this tree or species. I worry that vouchers are not properly accommodated in VegX. Again, we need to check with Nick."
199
coll_month,monthCollected,,
200
coll_number,catalogNumber,/_alt/1,Brad: Map instead as for voucher_string
201
coll_year,yearCollected,,
202
collday,dayCollected,,
203
collectiondate,dateCollected,,
204
collectno,recordNumber,,
205
collector1,recordedBy,/_join/2,
206
collector2,recordedBy,/_join/3,
207
collector3,recordedBy,/_join/4,
208
collmonth,monthCollected,,
209
collyear,yearCollected,,
210
comment1,fieldNotes,/_join/1,
211
comment2,fieldNotes,/_join/2,
212
comment3,fieldNotes,/_join/3,
213
comment4,fieldNotes,/_join/4,
214
conceptual_darwin_2003_1_0_BasisOfRecord,basisOfRecord,,
215
conceptual_darwin_2003_1_0_BoundingBox,footprintWKT,,
216
conceptual_darwin_2003_1_0_CatalogNumber,catalogNumber,,
217
conceptual_darwin_2003_1_0_Class,class,,
218
conceptual_darwin_2003_1_0_CollectionCode,collectionCode,,
219
conceptual_darwin_2003_1_0_Collector,recordedBy,,
220
conceptual_darwin_2003_1_0_CollectorNumber,recordNumber,/_alt/3,
221
conceptual_darwin_2003_1_0_ContinentOcean,continent,,
222
conceptual_darwin_2003_1_0_CoordinatePrecision,coordinatePrecision,,
223
conceptual_darwin_2003_1_0_Country,country,,
224
conceptual_darwin_2003_1_0_County,county,,
225
conceptual_darwin_2003_1_0_DateLastModified,dcterms:modified,,
226
conceptual_darwin_2003_1_0_DayCollected,dayCollected,,
227
conceptual_darwin_2003_1_0_DayIdentified,dayIdentified,,
228
conceptual_darwin_2003_1_0_Family,family,,
229
conceptual_darwin_2003_1_0_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
230
conceptual_darwin_2003_1_0_Genus,genus,,
231
conceptual_darwin_2003_1_0_IdentifiedBy,identifiedBy,,
232
conceptual_darwin_2003_1_0_IndividualCount,individualCount,,
233
conceptual_darwin_2003_1_0_InstitutionCode,institutionCode,,
234
conceptual_darwin_2003_1_0_JulianDay,day,/_alt/1,
235
conceptual_darwin_2003_1_0_Kingdom,kingdom,,
236
conceptual_darwin_2003_1_0_Latitude,verbatimLatitude,,
237
conceptual_darwin_2003_1_0_Locality,locality,,
238
conceptual_darwin_2003_1_0_Longitude,verbatimLongitude,,
239
conceptual_darwin_2003_1_0_MaximumDepth,maximumDepthInMeters,,
240
conceptual_darwin_2003_1_0_MaximumElevation,maximumElevationInMeters,,
241
conceptual_darwin_2003_1_0_MinimumDepth,minimumDepthInMeters,,
242
conceptual_darwin_2003_1_0_MinimumElevation,minimumElevationInMeters,,
243
conceptual_darwin_2003_1_0_MonthCollected,monthCollected,,
244
conceptual_darwin_2003_1_0_MonthIdentified,monthIdentified,,
245
conceptual_darwin_2003_1_0_Notes,fieldNotes,,
246
conceptual_darwin_2003_1_0_Order,order,,
247
conceptual_darwin_2003_1_0_Phylum,phylum,,
248
conceptual_darwin_2003_1_0_PreparationType,preparations,,
249
conceptual_darwin_2003_1_0_PreviousCatalogNumber,otherCatalogNumbers,,
250
conceptual_darwin_2003_1_0_RelatedCatalogItem,relatedResourceID,,
251
conceptual_darwin_2003_1_0_RelationshipType,relationshipOfResource,,
252
conceptual_darwin_2003_1_0_ScientificName,scientificName,,
253
conceptual_darwin_2003_1_0_ScientificNameAuthor,scientificNameAuthorship,/_alt/2,
254
conceptual_darwin_2003_1_0_Sex,sex,,
255
conceptual_darwin_2003_1_0_Species,specificEpithet,,
256
conceptual_darwin_2003_1_0_StateProvince,stateProvince,,
257
conceptual_darwin_2003_1_0_Subspecies,subspecies,,
258
conceptual_darwin_2003_1_0_TimeOfDay,eventTime,,
259
conceptual_darwin_2003_1_0_TypeStatus,typeStatus,,
260
conceptual_darwin_2003_1_0_YearCollected,yearCollected,,
261
conceptual_darwin_2003_1_0_YearIdentified,yearIdentified,,
262
convertednotes,fieldNotes,,
263
currentTaxonName sec Weakley 2006,scientificName,,
264
darwin:BasisOfRecord,basisOfRecord,,
265
darwin:CatalogNumber,catalogNumber,,
266
darwin:Class,class,,
267
darwin:CollectionCode,collectionCode,,
268
darwin:Collector,recordedBy,,
269
darwin:CollectorNumber,recordNumber,,
270
darwin:ContinentOcean,continent,,
271
darwin:CoordinatePrecision,coordinatePrecision,,
272
darwin:Country,country,,
273
darwin:County,county,,
274
darwin:DateLastModified,dcterms:modified,,
275
darwin:DayCollected,dayCollected,,
276
darwin:DayIdentified,dayIdentified,,
277
darwin:Family,family,,
278
darwin:FieldNumber,UNUSED,,"`grep -F ""<darwin:FieldNumber>"" inputs/XAL/src/digir.specimens.xml` returns no lines. This historical DwC term (http://rs.tdwg.org/dwc/terms/history/index.htm#fieldNumber-2009-04-24) has close to the same meaning as recordNumber (http://rs.tdwg.org/dwc/terms/#recordNumber)."
279
darwin:Genus,genus,,
280
darwin:IdentifiedBy,identifiedBy,,
281
darwin:IndividualCount,individualCount,,
282
darwin:InstitutionCode,institutionCode,,
283
darwin:JulianDay,day,,
284
darwin:Kingdom,kingdom,,
285
darwin:Latitude,verbatimLatitude,,
286
darwin:Locality,locality,,
287
darwin:Longitude,verbatimLongitude,,
288
darwin:MaximumDepth,maximumDepthInMeters,,
289
darwin:MaximumElevation,maximumElevationInMeters,,
290
darwin:MinimumDepth,minimumDepthInMeters,,
291
darwin:MinimumElevation,minimumElevationInMeters,,
292
darwin:MonthCollected,monthCollected,,
293
darwin:MonthIdentified,monthIdentified,,
294
darwin:Notes,fieldNotes,,
295
darwin:Order,order,,
296
darwin:Phylum,phylum,,
297
darwin:PreparationType,preparations,,
298
darwin:PreviousCatalogNumber,otherCatalogNumbers,,
299
darwin:RelatedCatalogItem,relatedResourceID,,
300
darwin:RelationshipType,relationshipOfResource,,
301
darwin:ScientificName,scientificName,,
302
darwin:ScientificNameAuthor,scientificNameAuthorship,,
303
darwin:Sex,sex,,
304
darwin:Species,specificEpithet,,
305
darwin:StateProvince,stateProvince,,
306
darwin:Subspecies,subspecies,,
307
darwin:TimeOfDay,eventTime,,
308
darwin:TypeStatus,typeStatus,,
309
darwin:YearCollected,yearCollected,,
310
darwin:YearIdentified,yearIdentified,,
311
date_finish,endDate,,
312
date_start,startDate,,
313
det_type,voucherType,,"Brad: A SALVIAS value referring to the relationship between the voucher specimen and the observation. Affect how the identification of the specimen(latin name) is transferred to the observation. 'direct'=voucher specimen was collected from this same tree; they are one and the same individual. 'indirect'=voucher specimen was collected for a different individual, but the original data provider confirmed that this is the same species. 'default'=basically same as 'indirect'. 'uncollected'=no voucher specimen, data provider  asserted that this was the name but was unable to collect. The main different is that with 'direct', 'indirect', and 'default', the scientific name can be updated automatically based on the name attached to the specimen voucher (assuming you have a link to that data, presumably from a herbarium database. Whereas, if det_type='uncollected', the name can never change because there is no specimen."
314
dwc_curatorial_CollectorNumber,recordNumber,/_alt/3,
315
dwc_curatorial_FieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
316
dwc_curatorial_IdentifiedBy,identifiedBy,,
317
dwc_curatorial_IndividualCount,individualCount,,
318
dwc_curatorial_TypeStatus,typeStatus,,
319
dwc_dwcore_AuthorYearOfScientificName,scientificNameAuthorship,/_alt/3,
320
dwc_dwcore_BasisOfRecord,basisOfRecord,,
321
dwc_dwcore_CatalogNumber,catalogNumber,,
322
dwc_dwcore_Class,class,,
323
dwc_dwcore_CollectionCode,collectionCode,,
324
dwc_dwcore_Collector,recordedBy,,
325
dwc_dwcore_Continent,continent,,
326
dwc_dwcore_Country,country,,
327
dwc_dwcore_County,county,,
328
dwc_dwcore_DateLastModified,dcterms:modified,,
329
dwc_dwcore_DayOfYear,day,/_alt/2,
330
dwc_dwcore_Family,family,,
331
dwc_dwcore_Genus,genus,,
332
dwc_dwcore_GlobalUniqueIdentifier,occurrenceID,,
333
dwc_dwcore_InfraspecificEpithet,infraspecificEpithet,,
334
dwc_dwcore_InstitutionCode,institutionCode,,
335
dwc_dwcore_Kingdom,kingdom,,
336
dwc_dwcore_Locality,locality,,
337
dwc_dwcore_MaximumDepthInMeters,maximumDepthInMeters,,
338
dwc_dwcore_MaximumElevationInMeters,maximumElevationInMeters,,
339
dwc_dwcore_MinimumDepthInMeters,minimumDepthInMeters,,
340
dwc_dwcore_MinimumElevationInMeters,minimumElevationInMeters,,
341
dwc_dwcore_Order,order,,
342
dwc_dwcore_Phylum,phylum,,
343
dwc_dwcore_Remarks,taxonRemarks,,
344
dwc_dwcore_ScientificName,scientificName,,
345
dwc_dwcore_Sex,sex,,
346
dwc_dwcore_SpecificEpithet,specificEpithet,,
347
dwc_dwcore_StateProvince,stateProvince,,
348
dwc_geospatial_DecimalLatitude,decimalLatitude,,
349
dwc_geospatial_DecimalLongitude,decimalLongitude,,
350
dwc_geospatial_VerbatimLatitude,verbatimLatitude,,
351
dwc_geospatial_VerbatimLongitude,verbatimLongitude,,
352
dwc_terms_basisOfRecord,basisOfRecord,,
353
dwc_terms_catalogNumber,catalogNumber,,
354
dwc_terms_class,class,,
355
dwc_terms_collectionCode,collectionCode,,
356
dwc_terms_collectionID,collectionID,,
357
dwc_terms_continent,continent,,
358
dwc_terms_coordinateUncertaintyInMeters,coordinateUncertaintyInMeters,,
359
dwc_terms_country,country,,
360
dwc_terms_county,county,,
361
dwc_terms_dateIdentified,dateIdentified,,
362
dwc_terms_day,day,,
363
dwc_terms_decimalLatitude,decimalLatitude,,
364
dwc_terms_decimalLongitude,decimalLongitude,,
365
dwc_terms_endDayOfYear,endDayOfYear,,
366
dwc_terms_eventTime,eventTime,,
367
dwc_terms_family,family,,
368
dwc_terms_fieldNumber,recordNumber,/_alt/2,"Usage inconsistent with DwC definition. This field is instead identical to recordNumber, as the following query returns zero: (takes 23 sec)
369
dwc_terms_genus,genus,,
370
dwc_terms_identifiedBy,identifiedBy,,
371
dwc_terms_individualCount,individualCount,,
372
dwc_terms_infraspecificEpithet,infraspecificEpithet,,
373
dwc_terms_institutionCode,institutionCode,,
374
dwc_terms_kingdom,kingdom,,
375
dwc_terms_locality,locality,,
376
dwc_terms_maximumDepthInMeters,maximumDepthInMeters,,
377
dwc_terms_maximumElevationInMeters,maximumElevationInMeters,,
378
dwc_terms_minimumDepthInMeters,minimumDepthInMeters,,
379
dwc_terms_minimumElevationInMeters,minimumElevationInMeters,,
380
dwc_terms_month,month,,
381
dwc_terms_occurrenceRemarks,occurrenceRemarks,,
382
dwc_terms_order,order,,
383
dwc_terms_otherCatalogNumbers,otherCatalogNumbers,,
384
dwc_terms_phylum,phylum,,
385
dwc_terms_preparations,preparations,,
386
dwc_terms_recordNumber,recordNumber,/_alt/1,
387
dwc_terms_recordedBy,recordedBy,,
388
dwc_terms_scientificName,scientificName,,
389
dwc_terms_scientificNameAuthorship,scientificNameAuthorship,/_alt/1,
390
dwc_terms_sex,sex,,
391
dwc_terms_specificEpithet,specificEpithet,,
392
dwc_terms_startDayOfYear,startDayOfYear,,
393
dwc_terms_stateProvince,stateProvince,,
394
dwc_terms_typeStatus,typeStatus,,
395
dwc_terms_verbatimLatitude,verbatimLatitude,,
396
dwc_terms_verbatimLongitude,verbatimLongitude,,
397
dwc_terms_year,year,,
398
elev_m,elevationInMeters,,Brad: Mean elevation in meters. This is a constrained decimal value; is there no place for this in VegX other than verbatimElevation? Check with Nick.
399
elev_max_m,maximumElevationInMeters,,
400
elev_min_m,minimumElevationInMeters,,
401
elevationrange,UNUSED,,
402
exchangecapacity,cationExchangeCapacity,,
403
flower,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
404
fruit,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
405
gentry_dbh,diameterBreastHeightGentry,,
406
height_m,height,,
407
height_m,height,/_alt/2,
408
herbarium,institutionCode,,
409
holdridge_life_zone,communityID,,
410
ht_first_branch_m,heightFirstBranch,,
411
http__purl_org_dc_terms_modified,dcterms:modified,,
412
individual_code,recordNumber,,"Brad: Code, if any, used by the data provider to indicate an individual tree. Scope is unknown, although typically this value is unique only within plot, or sometimes only within subplot."
413
infra_ep_1,infraspecificEpithet,,
414
infra_rank_1,taxonRank,,
415
infraname,infraspecificEpithet,,
416
infrarank,taxonRank,/_alt/2,
417
inorout,fieldNotes,"/_join/7/_label[label=""in or out""]/value",
418
interpretationdate,dateIdentified,,
419
key,OMIT,,UniqueNYInternalRecordNumber is a better pkey
420
lat_decimal,decimalLatitude,,
421
lat_deg,verbatimLatitude,,
422
leaves,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
423
life_zone,communityName,,
424
life_zone_code,communityID,,
425
life_zone_code,communityName,,
426
loanto,fieldNotes,"/_join/6/_label[label=""loaned to""]/value",
427
locality_description,locality,,"Brad: No; this is free text description of locality where plot was situated, same as for DwC. Not a description of vegetation. Most likely='namedPlace.placeDescription' in VB; not sure about VX, again need to ask Nick where locality descriptions live in VX"
428
locationAccuracy-m,coordinateUncertaintyInMeters,,
429
locationaccuracy,coordinateUncertaintyInMeters,,
430
long_decimal,decimalLongitude,,
431
long_deg,verbatimLongitude,,
432
major_geo,continent,,
433
methodnarrative,samplingProtocol,,
434
museumaccessionnumber,catalogNumber,,
435
no_of_individuals,individualCount,,"Brad: This is a count of number of indiiduals for an *aggregate* observation. For VegBank, I'm not sure. Not exactly the same as stemCount. An individual tree could have 3 stems but would still only count as 1. We need to check with Bob on this."
436
obsStartDate,startDate,,
437
obsenddate,endDate,,
438
observation_id,eventID,,
439
obsstartdate,startDate,,
440
organic_percent,organic,"/_units:[default=""%"",to=]/value",
441
orig_family,verbatimFamily,,Brad: OMIT
442
orig_species,verbatimSpecificEpithet,,Brad: OMIT
443
pH acuoso (ISRIC 4–– 1 - 14),ph,,
444
parent_id,parentLocationID,,
445
plot_code,plotName,,
446
plot_code,plotName,,Brad: plotCode is as-assigned by data provider; guranteed to be unique only within dataset (=project)
447
plot_methodology,samplingProtocol,,
448
pol1,stateProvince,,Brad: No; pol1=stateProvince
449
pol2,county,,Brad: No pol2=countyParish
450
precip_mm,precipitation,,
451
project,projectName,,
452
publicLatitude,decimalLatitude,,
453
publicLongitude,decimalLongitude,,
454
region|state|province,stateProvince,,
455
root,reproductiveCondition,"/_map:[A=*,I=*,M=*]/value","Main values are A, I, and M. What do they mean?"
456
sand_percent,sand,"/_units:[default=""%"",to=]/value",
457
shape,footprintWKT,,
458
sheetno,associatedMedia,,?
459
silt_percent,silt,"/_units:[default=""%"",to=]/value",
460
soil_C,carbon,"/_units:[default=""%"",to=]/value",
461
soil_Ca,calcium,"/_units:[default=""%"",to=]/value",
462
soil_K,potassium,"/_units:[default=""%"",to=]/value",
463
soil_Mg,magnesium,"/_units:[default=""%"",to=]/value",
464
soil_N,nitrogen,"/_units:[default=""%"",to=]/value",
465
soil_Na,sodium,"/_units:[default=""%"",to=]/value",
466
soil_P,phosphorus,"/_units:[default=""%"",to=]/value/_map:[""<1,5""=0,*=*]/value",
467
soil_acidity,acidity,"/_units:[default=""%"",to=]/value/_map:[""<0.05""=0,*=*]/value",
468
soil_base,baseSaturation,"/_units:[default=""%"",to=]/value",
469
soil_cation_cap,cationExchangeCapacity,,
470
soil_conductivity,conductivity,,
471
soil_texture,texture,"/_units:[default=""%"",to=]/value",
472
soil_texture,texture,,
473
soilclay,clay,,
474
soilorganic,organic,,
475
soilph,ph,,
476
soilsand,sand,,
477
soilsilt,silt,,
478
soiltexture,texture,,
479
specific_authority,scientificNameAuthorship,,Brad: This is the author of the scientificName.
480
stem_canopy_form,canopyForm,,
481
stem_canopy_position,canopyPosition,,
482 4887 aaronmk
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
483
stem_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for plotObservations.intercept_cm, which measures the same dimension"
484 4857 aaronmk
stem_height_first_branch_m,heightFirstBranch,,"Brad: Same as for ht_first_branch_m, but applies to individuals stems, not trees. Rare."
485
stem_height_m,height,,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
486
stem_height_m,height,/_alt/1,"Brad: Same as for height, but applies to individuals stems, not trees. Rare."
487
stem_liana_infestation,lianaInfestation,,
488
stem_tag1,tag,/_alt/1/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Same as tag1 & tag2, but applied to individual stems. I'm still not clear how to distinguish between methods which tag only individuals trees, and those which tag individual stems."
489
stem_tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
490
stem_tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
491
stem_tag2,tag,/_alt/1/_alt/1,The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: see above
492
tag1,tag,/_alt/2,"The second tag supercedes the first. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
493
tag1,tag,/_alt/2/_alt/2,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: Another type of code, typically a number, used by the original data provider to indicate an individual tree. These are numbers on physical tags attached to the tree. Tag2 Is the same thing, only used if the first tag was lost. Obviously not a good system as it's possible a tree tag could be lost and changed more than once."
494
tag2,tag,/_alt/1,"The second tag supercedes the first. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
495
tag2,tag,/_alt/2/_alt/1,"The second tag supercedes the first. The stem tag supercedes the tree tag. Brad: See commend for tag1. Your mapping for tag2 looks correct. Probably both values would go here, only nested, with one superceding the other."
496
taxonobservation_id,taxonOccurrenceID,,
497
temp_c,temperature,,
498 4887 aaronmk
temp_dbh,diameterBreastHeight_cm,,"Assuming units based on the units for intercept_cm, which measures the same dimension"
499 4857 aaronmk
usdaRank,taxonRank,/_alt/1,
500
voucher_string,catalogNumber,/_alt/2,"Brad: OMIT. This is the verbatim text, which includes both collectors name and collection number. I would use coll_number, below."
501
x,organismX,,
502
x_position,organismX,,"Brad: These are important, fundamental values of many tree plots"
503
y,organismY,,
504
y_position,organismY,,Brad: See comment above for x_position