| 1 |
6406
|
aaronmk
|
bien_web,VegBIEN:/_setDefault:[source_id/source/shortname/_env:[name=source]]/path/_simplifyPath:[next=parent_id]/path,Comments
|
| 2 |
6409
|
aaronmk
|
observationID,"/_if[@name=""if specimen""]/cond/_exists",
|
| 3 |
|
|
dataSourceName,"/_if[@name=""if specimen""]/else/source/shortname/_first/1",
|
| 4 |
6777
|
aaronmk
|
observationType,"/_if[@name=""if specimen""]/else/source:[shortname/_first/2/_env:[name=source]]/observationtype",
|
| 5 |
5756
|
aaronmk
|
plotCode,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/1",
|
| 6 |
6073
|
aaronmk
|
plotID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/2/_if[@name=""if locationID""]/cond/_exists",
|
| 7 |
6774
|
aaronmk
|
observationType,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/cond/_eq:[right=plot]/left",
|
| 8 |
6756
|
aaronmk
|
observationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/1",
|
| 9 |
|
|
observationID,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/cond/_exists",
|
| 10 |
|
|
dataSourceName,"/location/_if[@name=""if subplot""]/else/authorlocationcode/_first/3/_if[@name=""if plot""]/else/_alt/2/_if[@name=""if catalogNumber""]/then/_join/1/_if[@name=""if specimen""]/then",
|
| 11 |
6073
|
aaronmk
|
plotID,"/location/_if[@name=""if subplot""]/else/sourceaccessioncode/_if[@name=""if geovalidation""]/else",
|
| 12 |
5756
|
aaronmk
|
plotCode,"/location/_if[@name=""if subplot""]/then/parent_id/location/authorlocationcode",
|
| 13 |
6073
|
aaronmk
|
plotID,"/location/_if[@name=""if subplot""]/then/parent_id/location/sourceaccessioncode",
|
| 14 |
5756
|
aaronmk
|
plotAreaHa,/location/area_m2/_ha_to_m2/value,
|
| 15 |
|
|
elevation_m,/location/elevation_m/_alt/1,
|
| 16 |
6432
|
aaronmk
|
collectionNumber,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 17 |
|
|
observationID,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 18 |
|
|
isCultivated,"/location/iscultivated/_or/1/_if[@name=""if TaxonOccurrence""]/else/_alt/2",
|
| 19 |
5756
|
aaronmk
|
plotMethod,/location/locationevent/*_id/method/name,
|
| 20 |
6002
|
aaronmk
|
plotCode,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/authorlocationcode/_if[@name=""if subplot""]/then",
|
| 21 |
6073
|
aaronmk
|
plotID,"/location/locationevent/_if[@name=""if subplot""]/then/_if[@name=""if has event""]/then/parent_id/locationevent/*_id/location/sourceaccessioncode/_if[@name=""if subplot""]/then",
|
| 22 |
6235
|
aaronmk
|
observationDate,/location/locationevent/taxonoccurrence/aggregateoccurrence/collectiondate/_alt/1,
|
| 23 |
5756
|
aaronmk
|
pctCover,/location/locationevent/taxonoccurrence/aggregateoccurrence/cover_fraction/_percent_to_fraction/value,
|
| 24 |
7190
|
aaronmk
|
collectionNumber,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/authorplantcode,
|
| 25 |
6791
|
aaronmk
|
observationID,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/cond/_exists",
|
| 26 |
|
|
dataSourceName,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/name",
|
| 27 |
6795
|
aaronmk
|
dataSourceName,"/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/institution_id/sourcelist/_if[@name=""if specimen""]/then/sourcename/name/_split:[separator="", ""]/value",
|
| 28 |
6374
|
aaronmk
|
observationID,/location/locationevent/taxonoccurrence/aggregateoccurrence/plantobservation/specimenreplicate/sourceaccessioncode,
|
| 29 |
6992
|
aaronmk
|
plotCode,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
|
| 30 |
|
|
plotID,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/cond/_exists",
|
| 31 |
|
|
collectionNumber,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/2/_first/1",
|
| 32 |
|
|
taxon,"/location/locationevent/taxonoccurrence/authortaxoncode/_if[@name=""if in plot""]/then/_first/3/_first/2",
|
| 33 |
6177
|
aaronmk
|
collector,/location/locationevent/taxonoccurrence/collector_id/party/fullname,
|
| 34 |
6313
|
aaronmk
|
collectionNumber,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 35 |
6374
|
aaronmk
|
observationID,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/cond/_exists",
|
| 36 |
6317
|
aaronmk
|
isCultivated,"/location/locationevent/taxonoccurrence/iscultivated/_alt/1/_if[@name=""if TaxonOccurrence""]/then/_alt/2",
|
| 37 |
6374
|
aaronmk
|
observationID,/location/locationevent/taxonoccurrence/sourceaccessioncode/_first/3,
|
| 38 |
5756
|
aaronmk
|
identifiedBy,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/party/fullname,
|
| 39 |
|
|
species,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=species]/taxonepithet",
|
| 40 |
6179
|
aaronmk
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
| 41 |
5756
|
aaronmk
|
genus,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=genus]/taxonepithet",
|
| 42 |
6179
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/_if[@name=""if is canonical name""]/then/matched_label_id/taxonlabel:[source_id/source/shortname=NCBI]/taxonomicname",
|
| 43 |
5756
|
aaronmk
|
family,"/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/parent_id/taxonlabel/parent_id/_forEach:[in:[cultivar,forma,variety,subspecies,species,genus,],do=""taxonlabel[rank=_val]/parent_id""]/taxonlabel[rank=family]/taxonepithet",
|
| 44 |
7142
|
aaronmk
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/prefix/_taxon_family_require_std/family,
|
| 45 |
|
|
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/1,
|
| 46 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/2,
|
| 47 |
|
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/1/_alt/2/_join_words/3/_join_words/1,
|
| 48 |
|
|
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/*_id/taxonlabel/taxonomicname/_merge_prefix/value/_alt/2/_join_words/2,
|
| 49 |
5756
|
aaronmk
|
taxonAuthor,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/author,
|
| 50 |
|
|
family,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/family,
|
| 51 |
|
|
genus,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/genus,
|
| 52 |
5783
|
aaronmk
|
species,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/specific_epithet,
|
| 53 |
5756
|
aaronmk
|
taxon,/location/locationevent/taxonoccurrence/taxondetermination[!isoriginal]/*_id/taxonverbatim/taxonomicname,
|
| 54 |
5861
|
aaronmk
|
latitude,"/location/locationplace/*_id/place/*_id/coordinates/latitude_deg/_nullIf:[null=0,type=float]/value",
|
| 55 |
|
|
longitude,"/location/locationplace/*_id/place/*_id/coordinates/longitude_deg/_nullIf:[null=0,type=float]/value",
|
| 56 |
5855
|
aaronmk
|
country,/location/locationplace/*_id/place/country,
|
| 57 |
|
|
countyParish,/location/locationplace/*_id/place/county,
|
| 58 |
6179
|
aaronmk
|
latitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/latitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 59 |
|
|
longitude,"/location/locationplace/*_id/place/matched_place_id/place:[.,source_id/source/shortname=geoscrub]/*_id/coordinates:[source_id/source/shortname=geoscrub]/_first/2/longitude_deg/_nullIf:[null=0,type=float]/value",""".,"" sorts it with other coordinates mappings"
|
| 60 |
|
|
country,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/country/_first/2,
|
| 61 |
6303
|
aaronmk
|
countyParish,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/county/_first/2,
|
| 62 |
6179
|
aaronmk
|
stateProvince,/location/locationplace/*_id/place/matched_place_id/place:[source_id/source/shortname=geoscrub]/stateprovince/_first/2,
|
| 63 |
5855
|
aaronmk
|
stateProvince,/location/locationplace/*_id/place/stateprovince,
|
| 64 |
7009
|
aaronmk
|
plotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/cond/_exists",
|
| 65 |
|
|
plotID,"/location/sourceaccessioncode/_if[@name=""if locationID""]/then/_if[@name=""if subplot""]/then/_join/1",
|
| 66 |
6073
|
aaronmk
|
abund,,** No join mapping for *abund **
|
| 67 |
|
|
abund1,,** No join mapping for *abund1 **
|
| 68 |
|
|
abund10,,** No join mapping for *abund10 **
|
| 69 |
|
|
abund2.5,,** No join mapping for *abund2.5 **
|
| 70 |
|
|
acceptance,,** No join mapping for *acceptance **
|
| 71 |
6075
|
aaronmk
|
acceptance_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 72 |
6073
|
aaronmk
|
bien2_DBPlotID,,** No join mapping for *bien2_DBPlotID **
|
| 73 |
6075
|
aaronmk
|
bien2_DBPlotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 74 |
6073
|
aaronmk
|
bien2_ObservationID,,** No join mapping for *bien2_ObservationID **
|
| 75 |
6075
|
aaronmk
|
bien2_ObservationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 76 |
6073
|
aaronmk
|
bien2_OccurID,,** No join mapping for *bien2_OccurID **
|
| 77 |
6075
|
aaronmk
|
bien2_OccurID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 78 |
6073
|
aaronmk
|
bien2_TraitObservationID,,** No join mapping for *bien2_TraitObservationID **
|
| 79 |
6075
|
aaronmk
|
bien2_TraitObservationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 80 |
6073
|
aaronmk
|
bien2_taxonomyID,,** No join mapping for *bien2_taxonomyID **
|
| 81 |
6075
|
aaronmk
|
bien2_taxonomyID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 82 |
|
|
collector_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 83 |
6073
|
aaronmk
|
countryError,,** No join mapping for *countryError **
|
| 84 |
6075
|
aaronmk
|
country_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 85 |
6073
|
aaronmk
|
dataSourceID,,** No join mapping for *dataSourceID **
|
| 86 |
6075
|
aaronmk
|
dataSourceID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 87 |
6073
|
aaronmk
|
dataSourceNamePrimary,,** No join mapping for *dataSourceNamePrimary **
|
| 88 |
6075
|
aaronmk
|
dataSourceNamePrimary_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 89 |
|
|
dataSourceName_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 90 |
|
|
family_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 91 |
|
|
genus_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 92 |
6073
|
aaronmk
|
higherPlantGroup,,** No join mapping for higherPlantGroup **
|
| 93 |
6075
|
aaronmk
|
higherPlantGroup_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 94 |
|
|
identifiedBy_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 95 |
5756
|
aaronmk
|
isCultivatedReason,,** No join mapping for cultivatedBasis **
|
| 96 |
6075
|
aaronmk
|
isCultivatedReason_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 97 |
|
|
isCultivated_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 98 |
6073
|
aaronmk
|
isGeovalid,,** No join mapping for *isGeovalid **
|
| 99 |
6075
|
aaronmk
|
isGeovalid_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 100 |
6073
|
aaronmk
|
isNewWorld,,** No join mapping for isNewWorld **
|
| 101 |
6075
|
aaronmk
|
isNewWorld_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 102 |
6073
|
aaronmk
|
isValidLatLong,,** No join mapping for *isValidLatLong **
|
| 103 |
6075
|
aaronmk
|
isValidLatLong_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 104 |
6073
|
aaronmk
|
localityDescription,,** No join mapping for *localityDescription **
|
| 105 |
6075
|
aaronmk
|
observationID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 106 |
|
|
observationType_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 107 |
|
|
plotAreaHa_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 108 |
|
|
plotCode_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 109 |
|
|
plotID_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 110 |
|
|
plotMethod_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 111 |
6073
|
aaronmk
|
plotMinDbh,,** No join mapping for *plotMinDbh **
|
| 112 |
6075
|
aaronmk
|
plotMinDbh_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 113 |
6073
|
aaronmk
|
rank,,** No join mapping for *rank **
|
| 114 |
6075
|
aaronmk
|
rank_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 115 |
|
|
species_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 116 |
6073
|
aaronmk
|
stateProvinceError,,** No join mapping for *stateProvinceError **
|
| 117 |
6075
|
aaronmk
|
stateProvince_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 118 |
|
|
taxonAuthor_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 119 |
6073
|
aaronmk
|
taxonAuthorityVerbatim,,** No join mapping for *taxonAuthorityVerbatim **
|
| 120 |
6075
|
aaronmk
|
taxonAuthorityVerbatim_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 121 |
5756
|
aaronmk
|
taxonMorphospecies,,** No join mapping for scientificNameWithMorphospecies **
|
| 122 |
6075
|
aaronmk
|
taxonMorphospecies_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 123 |
|
|
taxon_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 124 |
6073
|
aaronmk
|
traitMethod,,** No join mapping for *traitMethod **
|
| 125 |
6075
|
aaronmk
|
traitMethod_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 126 |
7045
|
aaronmk
|
traitName,,** No join mapping for traitName **
|
| 127 |
6075
|
aaronmk
|
traitName_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 128 |
6073
|
aaronmk
|
traitUnit,,** No join mapping for *traitUnit **
|
| 129 |
6075
|
aaronmk
|
traitUnit_index,,** No non-empty join mapping for OMIT ** Placeholder column created by MySQL to PostgreSQL translation
|
| 130 |
6073
|
aaronmk
|
traitValue,,** No join mapping for *traitValue **
|
